MD14G1245200.v1.1

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0013680
Physical Location & Seq
Reverse (-)
32332346 .. 32334913
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1245200.v1.1.491

Sequence Viewer

Length: 1047 bp
ATGTCTCCTTCCAATACAAGGTCGGCCGAGAATAATGGAGGAGGAGGCGGCGGCGGCAAGAATTACATAGAGCACCAAGTCTCAAAGATGGACACACTGGCCGGCGTTGCCATCAAATACGGCGTCGAGGTGTGTGACATTAAAAGGATGAATGGGTTTGCTACGGATCTTCAAATGTTCGCTTTGAACACCTTGAAAATACCTTTGCCCGGAAGACATCCTCCCTCTGTTCCTTCTCCAACCACAACCACAAGAGAAAACGACGTTGAAAAATCCACCCCATGTCTTGGCCAATCTATTGTGCTAGAACCATTCTGCTCTTCTGTGGGTTCAAAACCTCCCAATGAGAAGAAGGCCACTACAGCAATGAGCACTTTACAGAAATACTACGGTCTAACATCTCCAAACTTGAAGGGAAAAGCGGAAGGCACCGAGATGGCTGTCTACAGAAGTCGAAGTTCTGAATCCTTTGATCAAAGTGCGGTCTCACCATTGTCTGACCCTCTAAGTCACCCTAAGAAGTCCAGACATTCTTCCATTGATCTGTTGTCGGAGAATGGTGCAATGGCTGATTACCTTGCAGCAGAACTTGGAGATGGGCAGGGTGAGAAATCTGATGACAAATCAGTCCGGAGGCGTCAGAAAGCTGAAGTTGATAATGGGGCTGTCACACCTGAAAGGTTGTTGAAAGGGGAAAACAGTGGTGGGACCAGAGCTTCAACAGGAAATGGTTTAGCCATGAGGCAGAAGTCATCAAGCCGAGCATCGCTGCCATCTGATTCGGAGTCAGGATGGTTGAACTCTATTCCGGTGGGCATGGGGGATTCTATCACTGTCATGACAGACGAAATGGCTGTGGTTCAGAAGTCGTCAAGCACACCAAGCTTAAAAGACCAAGACGGTAATAACACATCATCAATTTGGCCAACTTCAAGGTGGAGCTTGACACAAGACATTCAAGCTCTGTCAAGTGCAACGATGGCCAGACCAATCTTTGATGGCTTACCAAAGCCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

349

Amino Acids

37.06

Weight (kDa)

8.3

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 2 cut(s) 287, 1019
AccI GTMKAC 1 cut(s) 444
AccIII TCCGGA 1 cut(s) 630
AciI CCGC 6 cut(s) 48, 51, 54, 422, 482, 1024
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 6 cut(s) 24, 99, 289, 923, 981, 1021
AcuI CTGAAG 1 cut(s) 669
AcyI GRCGYC 2 cut(s) 123, 637
AfiI CCNNNNNNNGG 4 cut(s) 18, 209, 287, 1019
AluBI AGCT 5 cut(s) 647, 716, 885, 942, 962
AluI AGCT 5 cut(s) 647, 716, 885, 942, 962
Alw21I GWGCWC 2 cut(s) 75, 374
Alw26I GTCTC 3 cut(s) 9, 85, 490
AlwI GGATC 1 cut(s) 174
Aor13HI TCCGGA 1 cut(s) 630
AoxI GGCC 7 cut(s) 24, 99, 289, 354, 923, 981, 1021
ApeKI GCWGC 2 cut(s) 581, 769
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AspS9I GGNCC 1 cut(s) 708
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 3 cut(s) 480, 503, 617
AvaII GGWCC 1 cut(s) 708
BalI TGGCCA 3 cut(s) 291, 925, 983
BanI GGYRCC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 2 cut(s) 75, 374
BbvI GCAGC 2 cut(s) 593, 756
BccI CCATC 8 cut(s) 82, 119, 430, 590, 781, 786, 973, 992
BceAI ACGGC 1 cut(s) 136
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 9, 85, 490
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 2 cut(s) 360, 445
BisI GCNGC 6 cut(s) 49, 52, 55, 582, 770, 1024
BlsI GCNGC 6 cut(s) 50, 53, 56, 583, 771, 1025
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 708
BmgT120I GGNCC 1 cut(s) 708
BmiI GGNNCC 2 cut(s) 430, 709
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 773
BpiI GAAGAC 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 2 cut(s) 123, 637
BsaI GGTCTC 1 cut(s) 490
BsaWI WCCGGW 2 cut(s) 630, 808
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 209, 287, 1019
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 102, 1024
Bse3DI GCAATG 2 cut(s) 372, 570
BseAI TCCGGA 1 cut(s) 630
BseGI GGATG 3 cut(s) 153, 217, 797
BseLI CCNNNNNNNGG 4 cut(s) 18, 209, 287, 1019
BseMI GCAATG 2 cut(s) 372, 570
BseNI ACTGG 2 cut(s) 102, 1024
BseRI GAGGAG 2 cut(s) 54, 57
BseX3I CGGCCG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 593, 756
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 7 cut(s) 26, 101, 291, 356, 925, 983, 1023
BshNI GGYRCC 1 cut(s) 428
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 2 cut(s) 75, 374
BsiSI CCGG 4 cut(s) 102, 210, 631, 809
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 4 cut(s) 18, 209, 287, 1019
BsmAI GTCTC 3 cut(s) 9, 85, 490
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 7 cut(s) 26, 101, 291, 356, 925, 983, 1023
Bso31I GGTCTC 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 75, 374
Bsp13I TCCGGA 1 cut(s) 630
Bsp143I GATC 3 cut(s) 166, 472, 541
BspACI CCGC 6 cut(s) 48, 51, 54, 422, 482, 1024
BspANI GGCC 7 cut(s) 26, 101, 291, 356, 925, 983, 1023
BspEI TCCGGA 1 cut(s) 630
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 2 cut(s) 430, 709
BspPI GGATC 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 490
BsrDI GCAATG 2 cut(s) 372, 570
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 102, 1024
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 3 cut(s) 166, 472, 541
BssNI GRCGYC 2 cut(s) 123, 637
Bst4CI ACNGT 4 cut(s) 392, 701, 835, 902
Bst6I CTCTTC 1 cut(s) 325
BstACI GRCGYC 2 cut(s) 123, 637
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 506, 516
BstF5I GGATG 3 cut(s) 153, 217, 797
BstKTI GATC 3 cut(s) 169, 475, 544
BstMAI GTCTC 3 cut(s) 9, 85, 490
BstMBI GATC 3 cut(s) 166, 472, 541
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 5 cut(s) 54, 107, 362, 882, 980
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 2 cut(s) 360, 445
BstV1I GCAGC 2 cut(s) 593, 756
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZI CGGCCG 1 cut(s) 24
BsuRI GGCC 7 cut(s) 26, 101, 291, 356, 925, 983, 1023
BtgZI GCGATG 1 cut(s) 750
BtsCI GGATG 3 cut(s) 153, 217, 797
BtsIMutI CAGTG 3 cut(s) 95, 706, 831
Cac8I GCNNGC 1 cut(s) 103
CciI TCATGA 1 cut(s) 837
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 708
CseI GACGC 2 cut(s) 112, 626
CviAII CATG 4 cut(s) 282, 739, 817, 838
DdeI CTNAG 2 cut(s) 506, 516
DpnI GATC 3 cut(s) 168, 474, 543
DpnII GATC 3 cut(s) 166, 472, 541
DrdI GACNNNNNNGTC 1 cut(s) 626
DseDI GACNNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 6 cut(s) 24, 99, 289, 923, 981, 1021
EagI CGGCCG 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 708
Eco52I CGGCCG 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 669
FaeI CATG 4 cut(s) 285, 742, 820, 841
FaiI YATR 5 cut(s) 68, 283, 740, 818, 839
FaqI GGGAC 1 cut(s) 721
FatI CATG 4 cut(s) 281, 738, 816, 837
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 6 cut(s) 49, 52, 55, 582, 770, 1024
FokI GGATG 3 cut(s) 160, 204, 804
Fsp4HI GCNGC 6 cut(s) 49, 52, 55, 582, 770, 1024
FspBI CTAG 1 cut(s) 305
GluI GCNGC 6 cut(s) 49, 52, 55, 582, 770, 1024
HaeIII GGCC 7 cut(s) 26, 101, 291, 356, 925, 983, 1023
HapII CCGG 4 cut(s) 102, 210, 631, 809
HgaI GACGC 2 cut(s) 112, 626
Hin1I GRCGYC 2 cut(s) 123, 637
Hin1II CATG 4 cut(s) 285, 742, 820, 841
HindIII AAGCTT 1 cut(s) 883
HinfI GANTC 4 cut(s) 464, 779, 785, 824
HpaII CCGG 4 cut(s) 102, 210, 631, 809
HphI GGTGA 3 cut(s) 480, 503, 617
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 8 cut(s) 463, 499, 553, 616, 642, 778, 784, 864
Hpy188III TCNNGA 4 cut(s) 525, 631, 789, 838
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 2 cut(s) 128, 266
HpyAV CCTTC 5 cut(s) 18, 243, 346, 406, 419
HpyCH4III ACNGT 4 cut(s) 392, 701, 835, 902
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 563, 581, 974
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 107, 362, 882, 980
HpyF3I CTNAG 2 cut(s) 506, 516
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 2 cut(s) 123, 637
Hsp92II CATG 4 cut(s) 285, 742, 820, 841
Kpn2I TCCGGA 1 cut(s) 630
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 3 cut(s) 166, 472, 541
LguI GCTCTTC 1 cut(s) 325
LmnI GCTCC 1 cut(s) 939
Lsp1109I GCAGC 2 cut(s) 593, 756
LweI GCATC 1 cut(s) 773
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 3 cut(s) 134, 509, 667
MalI GATC 3 cut(s) 168, 474, 543
MboI GATC 3 cut(s) 166, 472, 541
MboII GAAGA 5 cut(s) 161, 225, 312, 361, 525
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 75, 374
MlsI TGGCCA 3 cut(s) 291, 925, 983
MluCI AATT 2 cut(s) 61, 918
MluNI TGGCCA 3 cut(s) 291, 925, 983
MlyI GAGTC 1 cut(s) 794
MmeI TCCRAC 2 cut(s) 263, 531
Mox20I TGGCCA 3 cut(s) 291, 925, 983
MroI TCCGGA 1 cut(s) 630
MroNI GCCGGC 1 cut(s) 101
MscI TGGCCA 3 cut(s) 291, 925, 983
MseI TTAA 2 cut(s) 141, 887
MslI CAYNNNNRTG 2 cut(s) 434, 836
Msp20I TGGCCA 3 cut(s) 291, 925, 983
MspA1I CMGCKG 1 cut(s) 1026
MspI CCGG 4 cut(s) 102, 210, 631, 809
MspR9I CCNGG 1 cut(s) 210
MwoI GCNNNNNNNGC 5 cut(s) 54, 107, 362, 882, 980
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 210
NdeII GATC 3 cut(s) 166, 472, 541
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 285, 742, 820, 841
NlaIV GGNNCC 2 cut(s) 430, 709
NmeAIII GCCGAG 2 cut(s) 52, 785
NmuCI GTSAC 3 cut(s) 134, 509, 667
PagI TCATGA 1 cut(s) 837
PciSI GCTCTTC 1 cut(s) 325
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 3 cut(s) 464, 779, 824
PflMI CCANNNNNTGG 2 cut(s) 287, 1019
PkrI GCNGC 6 cut(s) 50, 53, 56, 583, 771, 1025
PleI GAGTC 1 cut(s) 793
PpsI GAGTC 1 cut(s) 793
PspN4I GGNNCC 2 cut(s) 430, 709
PspPI GGNCC 1 cut(s) 708
PsuI RGATCY 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 434, 836
SapI GCTCTTC 1 cut(s) 325
SaqAI TTAA 2 cut(s) 141, 887
SatI GCNGC 6 cut(s) 49, 52, 55, 582, 770, 1024
Sau3AI GATC 3 cut(s) 166, 472, 541
Sau96I GGNCC 1 cut(s) 708
SchI GAGTC 1 cut(s) 794
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 2 cut(s) 75, 374
SfaNI GCATC 1 cut(s) 773
SfcI CTRYAG 2 cut(s) 360, 445
SinI GGWCC 1 cut(s) 708
SmiMI CAYNNNNRTG 2 cut(s) 434, 836
Sse9I AATT 2 cut(s) 61, 918
SsiI CCGC 6 cut(s) 48, 51, 54, 422, 482, 1024
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 4 cut(s) 392, 701, 835, 902
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 126, 454
TasI AATT 2 cut(s) 61, 918
TauI GCSGC 4 cut(s) 51, 54, 57, 1026
TfiI GAWTC 3 cut(s) 464, 779, 824
Tru1I TTAA 2 cut(s) 141, 887
Tru9I TTAA 2 cut(s) 141, 887
TscAI CASTG 3 cut(s) 102, 706, 838
TseFI GTSAC 3 cut(s) 134, 509, 667
TseI GCWGC 2 cut(s) 581, 769
Tsp45I GTSAC 3 cut(s) 134, 509, 667
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 3 cut(s) 102, 706, 838
Van91I CCANNNNNTGG 2 cut(s) 287, 1019
VpaK11BI GGWCC 1 cut(s) 708
XcmI CCANNNNNNNNNTGG 1 cut(s) 933
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.