Prupe.5G243200_v2.0.a1

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013680
Physical Location & Seq
Forward (+)
18260651 .. 18264170
3520 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G243200.1

Sequence Viewer

Length: 1041 bp
ATGTCTCCTTCGAATACAAGGTCGGTGGAGAATGGCAATAATGGAGGAGGAGGAGGAGGAGGAGGCAAGAATTTCATAGAGCACCAAGTCTCCAAGATGGACACACTTGCCGGCGTTGCCATCAAATACGGCGTCGAGGTGGCTGACATTAAAAGGATGAATGGGTTTGCTACAGATCTTCAAATGTTTGCTTTGAAGACTTTGAAAATACCTTTGCCAGGAAGACATCCGCCATCTTCCCCTCTTTCTCTACGCGAAAACAACACTGAAAAATCCACCCCATGTCTTGGTCGAGCTATTCTGCTAGAACCATTCCGCTCTGTCGGTTCAAAAGCTCCCAAAGAGAAAGTCACTACAGCAATGAGCACTTTACAAAAATACTATGGTCTAAGATCCCCAAATTTGGGGGATACAGCTGAAGGCATGGAGATGGCAGTCTACAGAAGTCGAAGTTCAGAATGCTTTAATGATGAGGTGCTGTCACCATTGTCTGAAAGTCACCCTAACAAGTCTAGGCATTCTTCAATTGATCTTTTAGCTGAGAATGGTGCAATGGCTGATTACACGCACCTTGCAGAACCTGGAAATGGGGAGGGTGAGAAATCTGATGAGAAATCGGTCCGAAGGCGTCAGAAAGCTGAAGTTGATAATGGTACTGGTACACCAGAAAGGCTGTTAAAAGGGGAAAACAGTGGTGGGAGCAGTGGTTTCTCTTCTTCAACAGGAAATGGTTTAGCCATGAGGCAGAAATCAGCAAGCCGAGCAGTACTGCAATCTGATTCGGAGTCAGGATGGTTGAACTCCATTCCAGTGGGATTAGGCGATTCTATCATAACTGACGAAATGGCTGTTGTTCGTAAATCATCAAGCACATCAAGCTTAAAAGACCAGGAGAGTAATAACACAGCATCAGTTTGGCCAACGTCAAGGTGGAGCTTGAAACAAGACTTGCAAGCTCTCTCAACTGCAACGATGGCTAGACCAATCTTTGATGGCTTACCGAAGCCAATAACTGGCCGCTGGAAAGCTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

347

Amino Acids

36.99

Weight (kDa)

8.72

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 287, 1013
AccBSI CCGCTC 1 cut(s) 318
AccI GTMKAC 1 cut(s) 438
AccII CGCG 1 cut(s) 255
AciI CCGC 3 cut(s) 230, 316, 1018
AclWI GGATC 1 cut(s) 387
AcoI YGGCCR 2 cut(s) 917, 1015
AcsI RAATTY 2 cut(s) 70, 400
AcuI CTGAAG 2 cut(s) 438, 660
AcyI GRCGYC 2 cut(s) 132, 628
AfaI GTAC 3 cut(s) 655, 661, 768
AfiI CCNNNNNNNGG 6 cut(s) 218, 287, 403, 404, 587, 1013
AgsI TTSAA 8 cut(s) 182, 196, 205, 330, 525, 720, 799, 940
AjnI CCWGG 3 cut(s) 217, 580, 888
AluBI AGCT 9 cut(s) 296, 335, 416, 539, 638, 879, 936, 956, 1028
AluI AGCT 9 cut(s) 296, 335, 416, 539, 638, 879, 936, 956, 1028
Alw21I GWGCWC 2 cut(s) 84, 368
Alw26I GTCTC 2 cut(s) 9, 94
AlwI GGATC 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 2 cut(s) 917, 1015
ApeKI GCWGC 1 cut(s) 1028
ApoI RAATTY 2 cut(s) 70, 400
ArsI GACNNNNNNTTYG 5 cut(s) 37, 117, 149, 333, 365
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 3 cut(s) 474, 491, 608
AsuII TTCGAA 1 cut(s) 11
AvaII GGWCC 1 cut(s) 619
BalI TGGCCA 1 cut(s) 919
BbsI GAAGAC 2 cut(s) 203, 229
Bbv12I GWGCWC 2 cut(s) 84, 368
BbvI GCAGC 1 cut(s) 1015
BccI CCATC 7 cut(s) 91, 128, 241, 424, 786, 967, 986
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 3 cut(s) 219, 582, 890
BciVI GTATCC 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 9, 94
BfaI CTAG 3 cut(s) 305, 513, 978
BfmI CTRYAG 3 cut(s) 171, 354, 439
BfuI GTATCC 1 cut(s) 403
BglII AGATCT 1 cut(s) 175
BisI GCNGC 2 cut(s) 1018, 1029
BlsI GCNGC 2 cut(s) 1019, 1030
BmcAI AGTACT 1 cut(s) 768
Bme1390I CCNGG 3 cut(s) 219, 582, 890
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 619
BmrFI CCNGG 3 cut(s) 219, 582, 890
BmsI GCATC 1 cut(s) 917
BpiI GAAGAC 2 cut(s) 203, 229
Bpu14I TTCGAA 1 cut(s) 11
BsaHI GRCGYC 2 cut(s) 132, 628
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 691, 721
Bsc4I CCNNNNNNNGG 6 cut(s) 218, 287, 403, 404, 587, 1013
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 3 cut(s) 661, 809, 1018
Bse3DI GCAATG 2 cut(s) 366, 558
BseBI CCWGG 3 cut(s) 219, 582, 890
BseGI GGATG 3 cut(s) 162, 226, 797
BseLI CCNNNNNNNGG 6 cut(s) 218, 287, 403, 404, 587, 1013
BseMI GCAATG 2 cut(s) 366, 558
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 3 cut(s) 661, 809, 1018
BseRI GAGGAG 6 cut(s) 60, 63, 66, 69, 72, 75
BseXI GCAGC 1 cut(s) 1015
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 919, 1017
BsiHKAI GWGCWC 2 cut(s) 84, 368
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 6 cut(s) 218, 287, 403, 404, 587, 1013
BsmAI GTCTC 2 cut(s) 9, 94
BsmI GAATGC 2 cut(s) 464, 517
BsnI GGCC 2 cut(s) 919, 1017
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 84, 368
Bsp143I GATC 3 cut(s) 175, 392, 529
BspACI CCGC 3 cut(s) 230, 316, 1018
BspANI GGCC 2 cut(s) 919, 1017
BspCNI CTCAG 1 cut(s) 532
BspFNI CGCG 1 cut(s) 255
BspPI GGATC 1 cut(s) 387
BspT104I TTCGAA 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 318
BsrDI GCAATG 2 cut(s) 366, 558
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 3 cut(s) 661, 809, 1018
BssAI RCCGGY 1 cut(s) 110
BssMI GATC 3 cut(s) 175, 392, 529
BssNI GRCGYC 2 cut(s) 132, 628
Bst2UI CCWGG 3 cut(s) 219, 582, 890
Bst4CI ACNGT 1 cut(s) 692
Bst6I CTCTTC 1 cut(s) 718
BstACI GRCGYC 2 cut(s) 132, 628
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 112, 757, 954
BstDEI CTNAG 2 cut(s) 389, 540
BstENI CCTNNNNNAGG 1 cut(s) 216
BstF5I GGATG 3 cut(s) 162, 226, 797
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 3 cut(s) 178, 395, 532
BstMAI GTCTC 2 cut(s) 9, 94
BstMBI GATC 3 cut(s) 175, 392, 529
BstMWI GCNNNNNNNGC 4 cut(s) 116, 761, 876, 974
BstNI CCWGG 3 cut(s) 219, 582, 890
BstSCI CCNGG 3 cut(s) 217, 580, 888
BstSFI CTRYAG 3 cut(s) 171, 354, 439
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 1015
BstV2I GAAGAC 2 cut(s) 203, 229
BstX2I RGATCY 2 cut(s) 175, 392
BstXI CCANNNNNNTGG 1 cut(s) 811
BstYI RGATCY 2 cut(s) 175, 392
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 2 cut(s) 919, 1017
BtsCI GGATG 3 cut(s) 162, 226, 797
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 4 cut(s) 264, 697, 709, 816
Cac8I GCNNGC 3 cut(s) 112, 757, 954
CaiI CAGNNNCTG 1 cut(s) 581
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 619
CpoI CGGWCCG 1 cut(s) 619
CseI GACGC 2 cut(s) 121, 617
Csp6I GTAC 3 cut(s) 654, 660, 767
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CspI CGGWCCG 1 cut(s) 619
CviAII CATG 3 cut(s) 282, 424, 739
CviQI GTAC 3 cut(s) 654, 660, 767
DdeI CTNAG 2 cut(s) 389, 540
DpnI GATC 3 cut(s) 177, 394, 531
DpnII GATC 3 cut(s) 175, 392, 529
EaeI YGGCCR 2 cut(s) 917, 1015
Eam1104I CTCTTC 1 cut(s) 718
EarI CTCTTC 1 cut(s) 718
EciI GGCGGA 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 619
Eco57I CTGAAG 2 cut(s) 438, 660
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoRII CCWGG 3 cut(s) 217, 580, 888
FaeI CATG 3 cut(s) 285, 427, 742
FaiI YATR 6 cut(s) 77, 283, 384, 425, 740, 833
FalI AAGNNNNNCTT 1 cut(s) 1017
FatI CATG 3 cut(s) 281, 423, 738
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 1018, 1029
FokI GGATG 3 cut(s) 169, 213, 804
Fsp4HI GCNGC 2 cut(s) 1018, 1029
FspBI CTAG 3 cut(s) 305, 513, 978
GluI GCNGC 2 cut(s) 1018, 1029
HaeIII GGCC 2 cut(s) 919, 1017
HapII CCGG 1 cut(s) 111
HgaI GACGC 2 cut(s) 121, 617
Hin1I GRCGYC 2 cut(s) 132, 628
Hin1II CATG 3 cut(s) 285, 427, 742
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 3 cut(s) 779, 785, 824
HpaII CCGG 1 cut(s) 111
HphI GGTGA 3 cut(s) 474, 491, 608
Hpy166II GTNNAC 2 cut(s) 439, 662
Hpy188I TCNGA 7 cut(s) 457, 493, 607, 623, 633, 778, 784
Hpy188III TCNNGA 1 cut(s) 789
Hpy8I GTNNAC 2 cut(s) 439, 662
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 18, 413, 618
HpyCH4III ACNGT 1 cut(s) 692
HpyCH4IV ACGT 1 cut(s) 923
HpyCH4V TGCA 5 cut(s) 551, 575, 772, 952, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 761, 876, 974
HpyF3I CTNAG 2 cut(s) 389, 540
HpySE526I ACGT 1 cut(s) 923
Hsp92I GRCGYC 2 cut(s) 132, 628
Hsp92II CATG 3 cut(s) 285, 427, 742
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 3 cut(s) 175, 392, 529
LmnI GCTCC 3 cut(s) 340, 699, 933
Lsp1109I GCAGC 1 cut(s) 1015
LweI GCATC 1 cut(s) 917
MaeI CTAG 3 cut(s) 305, 513, 978
MaeII ACGT 1 cut(s) 923
MaeIII GTNAC 3 cut(s) 349, 480, 497
MalI GATC 3 cut(s) 177, 394, 531
MbiI CCGCTC 1 cut(s) 318
MboI GATC 3 cut(s) 175, 392, 529
MboII GAAGA 7 cut(s) 170, 208, 228, 234, 513, 705, 708
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 2 cut(s) 175, 392
MhlI GDGCHC 2 cut(s) 84, 368
MlsI TGGCCA 1 cut(s) 919
MluCI AATT 3 cut(s) 70, 400, 525
MluNI TGGCCA 1 cut(s) 919
MlyI GAGTC 1 cut(s) 794
Mox20I TGGCCA 1 cut(s) 919
MroNI GCCGGC 1 cut(s) 110
MscI TGGCCA 1 cut(s) 919
MseI TTAA 4 cut(s) 150, 465, 677, 881
MslI CAYNNNNRTG 2 cut(s) 428, 809
Msp20I TGGCCA 1 cut(s) 919
MspA1I CMGCKG 2 cut(s) 416, 1020
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 3 cut(s) 219, 582, 890
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 2 cut(s) 464, 517
MvaI CCWGG 3 cut(s) 219, 582, 890
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 116, 761, 876, 974
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 3 cut(s) 175, 392, 529
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 3 cut(s) 285, 427, 742
NmeAIII GCCGAG 1 cut(s) 785
NmuCI GTSAC 3 cut(s) 349, 480, 497
NspV TTCGAA 1 cut(s) 11
PctI GAATGC 2 cut(s) 464, 517
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 779, 824
PflMI CCANNNNNTGG 2 cut(s) 287, 1013
PkrI GCNGC 2 cut(s) 1019, 1030
PleI GAGTC 1 cut(s) 793
PpsI GAGTC 1 cut(s) 793
Psp6I CCWGG 3 cut(s) 217, 580, 888
PspGI CCWGG 3 cut(s) 217, 580, 888
PspPI GGNCC 1 cut(s) 619
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 2 cut(s) 175, 392
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 3 cut(s) 655, 661, 768
RsaNI GTAC 3 cut(s) 654, 660, 767
RseI CAYNNNNRTG 2 cut(s) 428, 809
Rsr2I CGGWCCG 1 cut(s) 619
RsrII CGGWCCG 1 cut(s) 619
SaqAI TTAA 4 cut(s) 150, 465, 677, 881
SatI GCNGC 2 cut(s) 1018, 1029
Sau3AI GATC 3 cut(s) 175, 392, 529
Sau96I GGNCC 1 cut(s) 619
ScaI AGTACT 1 cut(s) 768
SchI GAGTC 1 cut(s) 794
ScrFI CCNGG 3 cut(s) 219, 582, 890
SduI GDGCHC 2 cut(s) 84, 368
SfaNI GCATC 1 cut(s) 917
SfcI CTRYAG 3 cut(s) 171, 354, 439
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 1 cut(s) 619
SmiMI CAYNNNNRTG 2 cut(s) 428, 809
Sse9I AATT 3 cut(s) 70, 400, 525
SsiI CCGC 3 cut(s) 230, 316, 1018
SspMI CTAG 3 cut(s) 305, 513, 978
StyD4I CCNGG 3 cut(s) 217, 580, 888
TaaI ACNGT 1 cut(s) 692
TaiI ACGT 1 cut(s) 926
TaqI TCGA 4 cut(s) 11, 135, 292, 448
TaqII GACCGA 1 cut(s) 607
TasI AATT 3 cut(s) 70, 400, 525
TatI WGTACW 1 cut(s) 766
TauI GCSGC 1 cut(s) 1020
TfiI GAWTC 2 cut(s) 779, 824
Tru1I TTAA 4 cut(s) 150, 465, 677, 881
Tru9I TTAA 4 cut(s) 150, 465, 677, 881
TscAI CASTG 4 cut(s) 271, 697, 709, 816
TseFI GTSAC 3 cut(s) 349, 480, 497
TseI GCWGC 1 cut(s) 1028
Tsp45I GTSAC 3 cut(s) 349, 480, 497
TspDTI ATGAA 2 cut(s) 64, 173
TspRI CASTG 4 cut(s) 271, 697, 709, 816
Van91I CCANNNNNTGG 2 cut(s) 287, 1013
VpaK11BI GGWCC 1 cut(s) 619
XagI CCTNNNNNAGG 1 cut(s) 216
XapI RAATTY 2 cut(s) 70, 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 927
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 3 cut(s) 305, 513, 978
ZrmI AGTACT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.