pycom14g20620

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013680
Physical Location & Seq
Reverse (-)
21649560 .. 21651129
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g20620.2

Sequence Viewer

Length: 1059 bp
ATGTCTCCTTCCAATACAAGGTCGGCCGAGAATAATGGAGGAGGAGGCGGCGGCGGCAAGAATTACATAGAGCACCAAGTCTCAAAGATGGACACACTCGCCGGCGTTGCCATCAAATACGGCGTCGAGGTGTGTGACATTAAAAGGATGAATGGGTTTGCTACGGATCTTCAAATGTTCGCTTTGAACACCTTGAAAATACCTTTGCCCGGAAGACATCCTCCCTCTATTCCTTCTCCAGCCACAACCACAACCACAACCACAAGAGAAAACGACCTTGAAAAATCCACCCCATGTCTTGGCCAATCTATTATGCTAGAACCATTCTGCTCTTCTGTGGGTTCAAACCCTCCCAATGAGAAGAAGGCCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAACATCTCCAAACTTGAAGGGAAAAGCAGAAGGCACCGAGATGGCTGTCTACAGAAGTCGAAGTTCTGAATCCTTTGATCAAAGTGCGGTCTCACCATTGTCTGACCCACTAAGTCACCCTAAGAAGTCCAGACATTCTTCCATTGATCTGTTGTCGGAGAATGGTGCAATGGCTGATTACCTTGCAGCAGAACTTGGAGATGGGCAGGGTGAGAAATCTGATGACAAATCAGTCCGGAGGCGTCAGAAAGCTGAAGTTGATAATGGGGCTGTCACACCTGAAAGGTTGTTGAAGGGGGAAAACAGTGCTGGGACCAGAGCTTCAACAGGAAATGGTTTAGCCATGAGGCAGAAGTCATCAAGCCGAGCATCGCTGCCATCTGATTCGGAGTCAGGATGGTTGAACTCTATTCCGGTGGGCATGGGGGATTCTATAACTGTCATGACAGACGAAATGGCTGTGGTTCAGAAGTCATCAAGCACACCGAGCTTAAAAGACCAAGACAGTAATAACACAGCATCAATTTGGCCAACTTCAAGGTGGAGCTTGACACAAGACATTCAAGCTCTGTCAAGTGCAACGATGGCCAGACCAATCTTTGATGGCTTACCAAAGCCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

353

Amino Acids

37.51

Weight (kDa)

7.68

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 638
AccB1I GGYRCC 1 cut(s) 440
AccB7I CCANNNNNTGG 2 cut(s) 299, 1031
AccI GTMKAC 1 cut(s) 456
AccIII TCCGGA 1 cut(s) 642
AciI CCGC 5 cut(s) 48, 51, 54, 494, 1036
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 5 cut(s) 24, 301, 935, 993, 1033
AcuI CTGAAG 1 cut(s) 681
AcyI GRCGYC 2 cut(s) 123, 649
AfiI CCNNNNNNNGG 4 cut(s) 18, 209, 299, 1031
AluBI AGCT 5 cut(s) 659, 728, 897, 954, 974
AluI AGCT 5 cut(s) 659, 728, 897, 954, 974
Alw21I GWGCWC 2 cut(s) 75, 386
Alw26I GTCTC 3 cut(s) 9, 85, 502
AlwI GGATC 1 cut(s) 174
Aor13HI TCCGGA 1 cut(s) 642
AoxI GGCC 6 cut(s) 24, 301, 366, 935, 993, 1033
ApeKI GCWGC 2 cut(s) 593, 781
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AspS9I GGNCC 1 cut(s) 720
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 3 cut(s) 492, 515, 629
AvaII GGWCC 1 cut(s) 720
BalI TGGCCA 3 cut(s) 303, 937, 995
BanI GGYRCC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 2 cut(s) 75, 386
BbvI GCAGC 2 cut(s) 605, 768
BccI CCATC 8 cut(s) 82, 119, 442, 602, 793, 798, 985, 1004
BceAI ACGGC 1 cut(s) 136
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 9, 85, 502
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 2 cut(s) 372, 457
BisI GCNGC 6 cut(s) 49, 52, 55, 594, 782, 1036
BlsI GCNGC 6 cut(s) 50, 53, 56, 595, 783, 1037
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 720
BmiI GGNNCC 2 cut(s) 442, 721
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 2 cut(s) 785, 935
BpiI GAAGAC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 2 cut(s) 123, 649
BsaI GGTCTC 1 cut(s) 502
BsaWI WCCGGW 2 cut(s) 642, 820
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 209, 299, 1031
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 1036
Bse3DI GCAATG 2 cut(s) 384, 582
BseAI TCCGGA 1 cut(s) 642
BseGI GGATG 3 cut(s) 153, 217, 809
BseLI CCNNNNNNNGG 4 cut(s) 18, 209, 299, 1031
BseMI GCAATG 2 cut(s) 384, 582
BseNI ACTGG 1 cut(s) 1036
BseRI GAGGAG 2 cut(s) 54, 57
BseX3I CGGCCG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 605, 768
BseYI CCCAGC 1 cut(s) 716
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 6 cut(s) 26, 303, 368, 937, 995, 1035
BshNI GGYRCC 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 2 cut(s) 75, 386
BsiSI CCGG 4 cut(s) 102, 210, 643, 821
BslFI GGGAC 1 cut(s) 733
BslI CCNNNNNNNGG 4 cut(s) 18, 209, 299, 1031
BsmAI GTCTC 3 cut(s) 9, 85, 502
BsmFI GGGAC 1 cut(s) 733
BsnI GGCC 6 cut(s) 26, 303, 368, 937, 995, 1035
Bso31I GGTCTC 1 cut(s) 502
Bsp1286I GDGCHC 2 cut(s) 75, 386
Bsp13I TCCGGA 1 cut(s) 642
Bsp143I GATC 3 cut(s) 166, 484, 553
BspACI CCGC 5 cut(s) 48, 51, 54, 494, 1036
BspANI GGCC 6 cut(s) 26, 303, 368, 937, 995, 1035
BspEI TCCGGA 1 cut(s) 642
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 2 cut(s) 442, 721
BspPI GGATC 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 502
BsrDI GCAATG 2 cut(s) 384, 582
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 1036
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 3 cut(s) 166, 484, 553
BssNI GRCGYC 2 cut(s) 123, 649
Bst4CI ACNGT 3 cut(s) 713, 847, 914
Bst6I CTCTTC 1 cut(s) 337
BstACI GRCGYC 2 cut(s) 123, 649
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 518, 528
BstF5I GGATG 3 cut(s) 153, 217, 809
BstKTI GATC 3 cut(s) 169, 487, 556
BstMAI GTCTC 3 cut(s) 9, 85, 502
BstMBI GATC 3 cut(s) 166, 484, 553
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 5 cut(s) 54, 107, 374, 894, 992
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 2 cut(s) 372, 457
BstV1I GCAGC 2 cut(s) 605, 768
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZI CGGCCG 1 cut(s) 24
BsuRI GGCC 6 cut(s) 26, 303, 368, 937, 995, 1035
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 3 cut(s) 153, 217, 809
BtsIMutI CAGTG 1 cut(s) 718
Cac8I GCNNGC 1 cut(s) 103
CciI TCATGA 1 cut(s) 849
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 720
CseI GACGC 2 cut(s) 112, 638
CviAII CATG 4 cut(s) 294, 751, 829, 850
DdeI CTNAG 2 cut(s) 518, 528
DpnI GATC 3 cut(s) 168, 486, 555
DpnII GATC 3 cut(s) 166, 484, 553
DrdI GACNNNNNNGTC 1 cut(s) 638
DseDI GACNNNNNNGTC 1 cut(s) 638
EaeI YGGCCR 5 cut(s) 24, 301, 935, 993, 1033
EagI CGGCCG 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
EclXI CGGCCG 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 720
Eco52I CGGCCG 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 681
FaeI CATG 4 cut(s) 297, 754, 832, 853
FaiI YATR 8 cut(s) 68, 295, 314, 402, 752, 830, 842, 851
FaqI GGGAC 1 cut(s) 733
FatI CATG 4 cut(s) 293, 750, 828, 849
FbaI TGATCA 1 cut(s) 484
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 6 cut(s) 49, 52, 55, 594, 782, 1036
FokI GGATG 3 cut(s) 160, 204, 816
Fsp4HI GCNGC 6 cut(s) 49, 52, 55, 594, 782, 1036
FspBI CTAG 1 cut(s) 317
GluI GCNGC 6 cut(s) 49, 52, 55, 594, 782, 1036
GsaI CCCAGC 1 cut(s) 720
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 6 cut(s) 26, 303, 368, 937, 995, 1035
HapII CCGG 4 cut(s) 102, 210, 643, 821
HgaI GACGC 2 cut(s) 112, 638
Hin1I GRCGYC 2 cut(s) 123, 649
Hin1II CATG 4 cut(s) 297, 754, 832, 853
HinfI GANTC 4 cut(s) 476, 791, 797, 836
HpaII CCGG 4 cut(s) 102, 210, 643, 821
HphI GGTGA 3 cut(s) 492, 515, 629
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 8 cut(s) 475, 511, 565, 628, 654, 790, 796, 876
Hpy188III TCNNGA 4 cut(s) 537, 643, 801, 850
Hpy8I GTNNAC 1 cut(s) 457
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 6 cut(s) 18, 243, 358, 418, 431, 694
HpyCH4III ACNGT 3 cut(s) 713, 847, 914
HpyCH4V TGCA 3 cut(s) 575, 593, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 107, 374, 894, 992
HpyF3I CTNAG 2 cut(s) 518, 528
Hsp92I GRCGYC 2 cut(s) 123, 649
Hsp92II CATG 4 cut(s) 297, 754, 832, 853
Kpn2I TCCGGA 1 cut(s) 642
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 3 cut(s) 166, 484, 553
LguI GCTCTTC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 951
Lsp1109I GCAGC 2 cut(s) 605, 768
LweI GCATC 2 cut(s) 785, 935
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 3 cut(s) 134, 521, 679
MalI GATC 3 cut(s) 168, 486, 555
MboI GATC 3 cut(s) 166, 484, 553
MboII GAAGA 5 cut(s) 161, 225, 324, 373, 537
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 75, 386
MlsI TGGCCA 3 cut(s) 303, 937, 995
MluCI AATT 2 cut(s) 61, 930
MluNI TGGCCA 3 cut(s) 303, 937, 995
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 9 cut(s) 32, 35, 38, 121, 231, 235, 360, 639, 747
Mox20I TGGCCA 3 cut(s) 303, 937, 995
MreI CGCCGGCG 1 cut(s) 101
MroI TCCGGA 1 cut(s) 642
MroNI GCCGGC 1 cut(s) 101
MscI TGGCCA 3 cut(s) 303, 937, 995
MseI TTAA 2 cut(s) 141, 899
MslI CAYNNNNRTG 1 cut(s) 446
Msp20I TGGCCA 3 cut(s) 303, 937, 995
MspA1I CMGCKG 1 cut(s) 1038
MspI CCGG 4 cut(s) 102, 210, 643, 821
MspR9I CCNGG 1 cut(s) 210
MwoI GCNNNNNNNGC 5 cut(s) 54, 107, 374, 894, 992
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 210
NdeII GATC 3 cut(s) 166, 484, 553
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 297, 754, 832, 853
NlaIV GGNNCC 2 cut(s) 442, 721
NmeAIII GCCGAG 2 cut(s) 52, 797
NmuCI GTSAC 3 cut(s) 134, 521, 679
PagI TCATGA 1 cut(s) 849
PciSI GCTCTTC 1 cut(s) 337
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 3 cut(s) 476, 791, 836
PflMI CCANNNNNTGG 2 cut(s) 299, 1031
PkrI GCNGC 6 cut(s) 50, 53, 56, 595, 783, 1037
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
PspFI CCCAGC 1 cut(s) 716
PspN4I GGNNCC 2 cut(s) 442, 721
PspPI GGNCC 1 cut(s) 720
PsuI RGATCY 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 446
SapI GCTCTTC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 141, 899
SatI GCNGC 6 cut(s) 49, 52, 55, 594, 782, 1036
Sau3AI GATC 3 cut(s) 166, 484, 553
Sau96I GGNCC 1 cut(s) 720
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 2 cut(s) 75, 386
SfaNI GCATC 2 cut(s) 785, 935
SfcI CTRYAG 2 cut(s) 372, 457
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 2 cut(s) 61, 930
SsiI CCGC 5 cut(s) 48, 51, 54, 494, 1036
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 3 cut(s) 713, 847, 914
TaqI TCGA 2 cut(s) 126, 466
TasI AATT 2 cut(s) 61, 930
TauI GCSGC 4 cut(s) 51, 54, 57, 1038
TfiI GAWTC 3 cut(s) 476, 791, 836
Tru1I TTAA 2 cut(s) 141, 899
Tru9I TTAA 2 cut(s) 141, 899
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 3 cut(s) 134, 521, 679
TseI GCWGC 2 cut(s) 593, 781
Tsp45I GTSAC 3 cut(s) 134, 521, 679
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 718
Van91I CCANNNNNTGG 2 cut(s) 299, 1031
VpaK11BI GGWCC 1 cut(s) 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 945
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.