Rh7AG004000

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013680
Physical Location & Seq
Reverse (-)
301510 .. 303176
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG004000.1

Sequence Viewer

Length: 1047 bp
ATGTCGCCTTCAAATACAGGGTCGGTGGGCAACGGAGGAGCAGGGGGAAAGAATTACATAGAGCACCAAGTCTCCAAGATGGACACTCTCGCCGGCGTTGCTATCAAATACGGCGTTGAGGTCGCTGACATTAAAAGGATGAATGGCTTTGCTACAGATCTTCAAATGTTTGCTTTGAAGACCTTGAAAATACCTTTACCAGGAAGACATTCACCATCTACTGCTTCTCTTTCTCCACAAGAAAACAACACTGAAAAGTCATCCTCAGGTCTTGGCCAGCCTAATTTGCTACCACCATTCCGATCTGTAGGTTCAAGAGCTCCCAAGGATAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAAAACCTCCAAATCGGAGGGGCTCAACTGAAGGCATGGAGATGGCTGTTTACAGAAGTAGAAGTTCAGAAGACTTTGATGATGGGTTGTTGTCAAAGGCCTCACCATTTTCTGATTCTCAAAGTCACCATAACATGACTAGACGTTTTTCTGTTGGCCAATTGACTGAGAATGGTGCAGTGGCTGATTATATGCACTTTGCAGACTCCATGGATGGGGAGGGTGAGAAATCTGATGATAAGTCAGTCCGAAGGCGTCAGAAAACTGAAGTTGAAAATGGGAATGTCACACCAGAGAGGATGTTAAAAGGGGAAAAAAGTGGTGGGAGCAGTGGTTTCTCAGCCTCAACAGGAAAGGGTTTAGCCATGAGGCCGAAATCAGCAAGCCGAGCAGTGCTGCAATCTGAGTCAGATTCAGGATGGTTGAACTCTATCCCAGTGGGACTGGGAGAGTCTATCGTGACCACTGATGAAGTGACTGTTGTTCGCAAATCATCAAGCACACCAAGTTTAAAAGAGGAGGAAAATAACAGCACAGCATCAGTTTGGCCAACGTCAAGGTGGAGCTTGAAAACAGACTTGCAAGCTCTTTCAAATGCAGCATCTATTACCAGACCAATCTTTGATGGCTTGCCGAAACCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

348

Amino Acids

37.37

Weight (kDa)

9.3

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1019
AciI CCGC 1 cut(s) 1024
AcoI YGGCCR 4 cut(s) 274, 529, 920, 1021
AcuI CTGAAG 2 cut(s) 423, 660
AcyI GRCGYC 1 cut(s) 628
AfiI CCNNNNNNNGG 3 cut(s) 200, 588, 1019
AgsI TTSAA 9 cut(s) 12, 164, 178, 187, 315, 647, 799, 943, 966
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 3 cut(s) 320, 939, 959
AluI AGCT 3 cut(s) 320, 939, 959
Alw21I GWGCWC 3 cut(s) 66, 322, 353
Alw26I GTCTC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 6 cut(s) 274, 471, 529, 743, 920, 1021
ApeKI GCWGC 2 cut(s) 769, 971
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 208
AsuHPI GGTGA 4 cut(s) 204, 468, 491, 608
AxyI CCTNAGG 1 cut(s) 265
BalI TGGCCA 3 cut(s) 276, 531, 922
BanII GRGCYC 2 cut(s) 322, 398
BbsI GAAGAC 3 cut(s) 185, 211, 450
Bbv12I GWGCWC 3 cut(s) 66, 322, 353
BbvI GCAGC 2 cut(s) 756, 983
BccI CCATC 7 cut(s) 73, 223, 409, 449, 581, 786, 992
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 3 cut(s) 153, 306, 339
BglII AGATCT 1 cut(s) 157
BisI GCNGC 3 cut(s) 770, 972, 1024
BlsI GCNGC 3 cut(s) 771, 973, 1025
Bme1390I CCNGG 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 201
BmrI ACTGGG 2 cut(s) 803, 827
BmsI GCATC 2 cut(s) 920, 983
BmuI ACTGGG 2 cut(s) 803, 827
BpiI GAAGAC 3 cut(s) 185, 211, 450
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 2 cut(s) 324, 582
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 691, 721
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 588, 1019
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 3 cut(s) 809, 822, 1024
Bse21I CCTNAGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 324, 582
BseGI GGATG 5 cut(s) 144, 260, 592, 678, 797
BseLI CCNNNNNNNGG 3 cut(s) 200, 588, 1019
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 4 cut(s) 279, 531, 726, 768
BseNI ACTGG 3 cut(s) 809, 822, 1024
BseRI GAGGAG 2 cut(s) 51, 905
BseXI GCAGC 2 cut(s) 756, 983
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 6 cut(s) 276, 473, 531, 745, 922, 1023
BsiHKAI GWGCWC 3 cut(s) 66, 322, 353
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 828
BslI CCNNNNNNNGG 3 cut(s) 200, 588, 1019
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 828
BsnI GGCC 6 cut(s) 276, 473, 531, 745, 922, 1023
Bsp1286I GDGCHC 4 cut(s) 66, 322, 353, 398
Bsp143I GATC 2 cut(s) 157, 302
Bsp19I CCATGG 1 cut(s) 582
BspACI CCGC 1 cut(s) 1024
BspANI GGCC 6 cut(s) 276, 473, 531, 745, 922, 1023
BspCNI CTCAG 4 cut(s) 278, 532, 725, 769
BsrDI GCAATG 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 3 cut(s) 809, 822, 1024
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 324, 582
BssMI GATC 2 cut(s) 157, 302
BssNI GRCGYC 1 cut(s) 628
BssT1I CCWWGG 2 cut(s) 324, 582
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 853
BstACI GRCGYC 1 cut(s) 628
BstC8I GCNNGC 5 cut(s) 94, 278, 757, 957, 1004
BstDEI CTNAG 4 cut(s) 265, 540, 712, 777
BstDSI CCRYGG 1 cut(s) 582
BstENI CCTNNNNNAGG 1 cut(s) 198
BstF5I GGATG 5 cut(s) 144, 260, 592, 678, 797
BstKTI GATC 2 cut(s) 160, 305
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 2 cut(s) 157, 302
BstMWI GCNNNNNNNGC 3 cut(s) 98, 286, 761
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 3 cut(s) 153, 306, 339
BstV1I GCAGC 2 cut(s) 756, 983
BstV2I GAAGAC 3 cut(s) 185, 211, 450
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 265
BsuRI GGCC 6 cut(s) 276, 473, 531, 745, 922, 1023
BtgI CCRYGG 1 cut(s) 582
BtsCI GGATG 5 cut(s) 144, 260, 592, 678, 797
BtsI GCAGTG 3 cut(s) 558, 709, 771
BtsIMutI CAGTG 6 cut(s) 249, 558, 709, 771, 816, 837
Cac8I GCNNGC 5 cut(s) 94, 278, 757, 957, 1004
CaiI CAGNNNCTG 1 cut(s) 557
Cfr10I RCCGGY 1 cut(s) 92
CseI GACGC 1 cut(s) 617
CviAII CATG 4 cut(s) 409, 508, 583, 739
DdeI CTNAG 4 cut(s) 265, 540, 712, 777
DpnI GATC 2 cut(s) 159, 304
DpnII GATC 2 cut(s) 157, 302
DraI TTTAAA 1 cut(s) 885
EaeI YGGCCR 4 cut(s) 274, 529, 920, 1021
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 2 cut(s) 324, 582
Eco147I AGGCCT 1 cut(s) 473
Eco24I GRGCYC 2 cut(s) 322, 398
Eco53kI GAGCTC 1 cut(s) 320
Eco57I CTGAAG 2 cut(s) 423, 660
Eco81I CCTNAGG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 320
EcoNI CCTNNNNNAGG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 324, 582
EcoT38I GRGCYC 2 cut(s) 322, 398
ErhI CCWWGG 2 cut(s) 324, 582
FaeI CATG 4 cut(s) 412, 511, 586, 742
FaiI YATR 9 cut(s) 59, 369, 410, 504, 509, 564, 566, 584, 740
FaqI GGGAC 1 cut(s) 828
FatI CATG 4 cut(s) 408, 507, 582, 738
Fnu4HI GCNGC 3 cut(s) 770, 972, 1024
FokI GGATG 5 cut(s) 151, 247, 599, 685, 804
FriOI GRGCYC 2 cut(s) 322, 398
Fsp4HI GCNGC 3 cut(s) 770, 972, 1024
FspBI CTAG 1 cut(s) 513
GluI GCNGC 3 cut(s) 770, 972, 1024
HaeIII GGCC 6 cut(s) 276, 473, 531, 745, 922, 1023
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 617
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 4 cut(s) 412, 511, 586, 742
HinfI GANTC 5 cut(s) 488, 578, 779, 785, 824
HpaII CCGG 1 cut(s) 93
HphI GGTGA 4 cut(s) 204, 468, 491, 608
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 9 cut(s) 302, 390, 442, 487, 607, 623, 633, 778, 784
Hpy188III TCNNGA 3 cut(s) 315, 789, 832
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 3 cut(s) 18, 398, 618
HpyCH4III ACNGT 1 cut(s) 853
HpyCH4IV ACGT 2 cut(s) 517, 926
HpyCH4V TGCA 6 cut(s) 551, 568, 575, 772, 955, 971
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 286, 761
HpyF3I CTNAG 4 cut(s) 265, 540, 712, 777
HpySE526I ACGT 2 cut(s) 517, 926
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 4 cut(s) 412, 511, 586, 742
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 2 cut(s) 157, 302
LmnI GCTCC 4 cut(s) 38, 325, 699, 936
Lsp1109I GCAGC 2 cut(s) 756, 983
LweI GCATC 2 cut(s) 920, 983
MaeI CTAG 1 cut(s) 513
MaeII ACGT 2 cut(s) 517, 926
MaeIII GTNAC 5 cut(s) 334, 497, 658, 832, 847
MalI GATC 2 cut(s) 159, 304
MboI GATC 2 cut(s) 157, 302
MboII GAAGA 4 cut(s) 152, 190, 216, 455
MfeI CAATTG 1 cut(s) 533
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 4 cut(s) 66, 322, 353, 398
MlsI TGGCCA 3 cut(s) 276, 531, 922
MluCI AATT 3 cut(s) 52, 283, 533
MluNI TGGCCA 3 cut(s) 276, 531, 922
MlyI GAGTC 3 cut(s) 572, 788, 833
Mox20I TGGCCA 3 cut(s) 276, 531, 922
MreI CGCCGGCG 1 cut(s) 92
MroNI GCCGGC 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 208
MscI TGGCCA 3 cut(s) 276, 531, 922
MseI TTAA 3 cut(s) 132, 677, 884
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 3 cut(s) 276, 531, 922
MspA1I CMGCKG 1 cut(s) 1026
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 533
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 98, 286, 761
NaeI GCCGGC 1 cut(s) 94
NcoI CCATGG 1 cut(s) 582
NdeII GATC 2 cut(s) 157, 302
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 4 cut(s) 412, 511, 586, 742
NmeAIII GCCGAG 1 cut(s) 785
NmuCI GTSAC 5 cut(s) 334, 497, 658, 832, 847
PceI AGGCCT 1 cut(s) 473
PdiI GCCGGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 488, 785
PflMI CCANNNNNTGG 1 cut(s) 1019
PkrI GCNGC 3 cut(s) 771, 973, 1025
PleI GAGTC 3 cut(s) 572, 787, 832
PpsI GAGTC 3 cut(s) 572, 787, 832
Psp124BI GAGCTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 322
SaqAI TTAA 3 cut(s) 132, 677, 884
SatI GCNGC 3 cut(s) 770, 972, 1024
Sau3AI GATC 2 cut(s) 157, 302
SchI GAGTC 3 cut(s) 572, 788, 833
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 4 cut(s) 66, 322, 353, 398
SfaNI GCATC 2 cut(s) 920, 983
SfcI CTRYAG 3 cut(s) 153, 306, 339
SgrAI CRCCGGYG 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 3 cut(s) 52, 283, 533
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 1 cut(s) 1024
SspMI CTAG 1 cut(s) 513
SstI GAGCTC 1 cut(s) 322
StuI AGGCCT 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 2 cut(s) 324, 582
TaaI ACNGT 1 cut(s) 853
TaiI ACGT 2 cut(s) 520, 929
TasI AATT 3 cut(s) 52, 283, 533
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 2 cut(s) 488, 785
Tru1I TTAA 3 cut(s) 132, 677, 884
Tru9I TTAA 3 cut(s) 132, 677, 884
TscAI CASTG 6 cut(s) 256, 558, 709, 771, 816, 844
TseFI GTSAC 5 cut(s) 334, 497, 658, 832, 847
TseI GCWGC 2 cut(s) 769, 971
Tsp45I GTSAC 5 cut(s) 334, 497, 658, 832, 847
TspDTI ATGAA 2 cut(s) 155, 858
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 6 cut(s) 256, 558, 709, 771, 816, 844
Van91I CCANNNNNTGG 1 cut(s) 1019
XagI CCTNNNNNAGG 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 930
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.