Rh7BG003800

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013680
Physical Location & Seq
Reverse (-)
249434 .. 251984
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG003800.1

Sequence Viewer

Length: 1056 bp
ATGTCGCCTTCAAATACAGAGTCGGTGGGCAACGGAGGAGGAGGAGGAGGAGGAGGAAAGAATTACATAGAGCACCAAGTCTCCAAGATGGACACTCTCGCCGGCGTTGCTATCAAATACGGCGTTGAGGTCGCTGACATTAAAAGGATGAATGGCTTTGCTACAGATCTTCAAATGTTTGCTTTGAAGACCTTGAAAATACCTTTACCAGGAAGACATTCACCATCTACTGCTTCTCTTTCTCCACAAGAAAACAACACTGAAAAGTCATCCTCAGGTCTTGGCCAGCCTAATTTGCTACCACCATTCCGATCTGTAGGTTCAAGAGCTCCCAAGGATAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAAAACCTCCAAATCGGAGGGGCTCAACTGAAGGCATGGAGATGGCTGTTTACAGAAGTAGAAGTTCAGAAGACTTCGATGATGGCTTGTTGTCAAAGGCCTCACCATTTTCTGATTCTCAAAGTCACCATAACATGACTAGACGTTTTTCTGTTGGTCAATTGACTGAGAATGGTGCAATGGCTGATTATATGCACTTTGCAGACTCCATGGATGGGGAGGGTGAGAAATCTGATGATAAGTCAGTCCGAAGGCGTCAGAAAACTGAAGTTGAAAATGGGAATGTCACACCAGAGAGGATGTTAAAAGGGGAAAAAAGTGGTGGGAGCAGTGGTTTCTCAGCCTCAACAGGAAAGGGTTTAGCCATGAGGCCGAAATCAGCAAGCCGAGCTGTGCTGCAATCTGAGTCAGATTCAGGATGGTTGAACTCTATCCCAGTGGGACTGGGAGAGTCTATCGTGACCACTGATGAAGTGACTGTTGTTCGCAAATCATCAAGCACACCAAGTTTAAAAGAGGAGGAAAATAACAGCACAGCATCAGTTTGGCCAACTTCAAGGTGGAGCTTGAAAACAGACTTGCAAGCTCTTTCAAATGCAGCATCTATTACCAGACCAATCTTTGATGGCTTGCCGAAACCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

351

Amino Acids

37.63

Weight (kDa)

9.18

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1028
AciI CCGC 1 cut(s) 1033
AcoI YGGCCR 3 cut(s) 283, 929, 1030
AcuI CTGAAG 2 cut(s) 432, 669
AcyI GRCGYC 1 cut(s) 637
AfiI CCNNNNNNNGG 3 cut(s) 209, 597, 1028
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 4 cut(s) 329, 773, 948, 968
AluI AGCT 4 cut(s) 329, 773, 948, 968
Alw21I GWGCWC 3 cut(s) 75, 331, 362
Alw26I GTCTC 1 cut(s) 85
AoxI GGCC 5 cut(s) 283, 480, 752, 929, 1030
ApeKI GCWGC 2 cut(s) 778, 980
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 217
AsuHPI GGTGA 4 cut(s) 213, 477, 500, 617
AxyI CCTNAGG 1 cut(s) 274
BalI TGGCCA 2 cut(s) 285, 931
BanII GRGCYC 2 cut(s) 331, 407
BbsI GAAGAC 3 cut(s) 194, 220, 459
Bbv12I GWGCWC 3 cut(s) 75, 331, 362
BbvI GCAGC 2 cut(s) 765, 992
BccI CCATC 7 cut(s) 82, 232, 418, 458, 590, 795, 1001
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 3 cut(s) 162, 315, 348
BglII AGATCT 1 cut(s) 166
BisI GCNGC 3 cut(s) 779, 981, 1033
BlsI GCNGC 3 cut(s) 780, 982, 1034
Bme1390I CCNGG 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 2 cut(s) 812, 836
BmsI GCATC 2 cut(s) 929, 992
BmuI ACTGGG 2 cut(s) 812, 836
BpiI GAAGAC 3 cut(s) 194, 220, 459
BsaHI GRCGYC 1 cut(s) 637
BsaJI CCNNGG 2 cut(s) 333, 591
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 700, 730
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 597, 1028
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 3 cut(s) 818, 831, 1033
Bse21I CCTNAGG 1 cut(s) 274
Bse3DI GCAATG 2 cut(s) 360, 567
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 333, 591
BseGI GGATG 5 cut(s) 153, 269, 601, 687, 806
BseLI CCNNNNNNNGG 3 cut(s) 209, 597, 1028
BseMI GCAATG 2 cut(s) 360, 567
BseMII CTCAG 4 cut(s) 288, 540, 735, 777
BseNI ACTGG 3 cut(s) 818, 831, 1033
BseRI GAGGAG 7 cut(s) 51, 54, 57, 60, 63, 66, 914
BseXI GCAGC 2 cut(s) 765, 992
BshFI GGCC 5 cut(s) 285, 482, 754, 931, 1032
BsiHKAI GWGCWC 3 cut(s) 75, 331, 362
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 837
BslI CCNNNNNNNGG 3 cut(s) 209, 597, 1028
BsmAI GTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 837
BsnI GGCC 5 cut(s) 285, 482, 754, 931, 1032
Bsp1286I GDGCHC 4 cut(s) 75, 331, 362, 407
Bsp143I GATC 2 cut(s) 166, 311
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 1 cut(s) 1033
BspANI GGCC 5 cut(s) 285, 482, 754, 931, 1032
BspCNI CTCAG 4 cut(s) 287, 541, 734, 778
BsrDI GCAATG 2 cut(s) 360, 567
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 3 cut(s) 818, 831, 1033
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 333, 591
BssMI GATC 2 cut(s) 166, 311
BssNI GRCGYC 1 cut(s) 637
BssT1I CCWWGG 2 cut(s) 333, 591
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 862
BstACI GRCGYC 1 cut(s) 637
BstC8I GCNNGC 5 cut(s) 103, 287, 766, 966, 1013
BstDEI CTNAG 4 cut(s) 274, 549, 721, 786
BstDSI CCRYGG 1 cut(s) 591
BstENI CCTNNNNNAGG 1 cut(s) 207
BstF5I GGATG 5 cut(s) 153, 269, 601, 687, 806
BstKTI GATC 2 cut(s) 169, 314
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 166, 311
BstMWI GCNNNNNNNGC 3 cut(s) 107, 295, 770
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 3 cut(s) 162, 315, 348
BstV1I GCAGC 2 cut(s) 765, 992
BstV2I GAAGAC 3 cut(s) 194, 220, 459
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
Bsu36I CCTNAGG 1 cut(s) 274
BsuRI GGCC 5 cut(s) 285, 482, 754, 931, 1032
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 5 cut(s) 153, 269, 601, 687, 806
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 4 cut(s) 258, 718, 825, 846
Cac8I GCNNGC 5 cut(s) 103, 287, 766, 966, 1013
Cfr10I RCCGGY 1 cut(s) 101
CseI GACGC 1 cut(s) 626
CviAII CATG 4 cut(s) 418, 517, 592, 748
DdeI CTNAG 4 cut(s) 274, 549, 721, 786
DpnI GATC 2 cut(s) 168, 313
DpnII GATC 2 cut(s) 166, 311
DraI TTTAAA 1 cut(s) 894
EaeI YGGCCR 3 cut(s) 283, 929, 1030
Ecl136II GAGCTC 1 cut(s) 329
Eco130I CCWWGG 2 cut(s) 333, 591
Eco147I AGGCCT 1 cut(s) 482
Eco24I GRGCYC 2 cut(s) 331, 407
Eco53kI GAGCTC 1 cut(s) 329
Eco57I CTGAAG 2 cut(s) 432, 669
Eco81I CCTNAGG 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 329
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 333, 591
EcoT38I GRGCYC 2 cut(s) 331, 407
ErhI CCWWGG 2 cut(s) 333, 591
FaeI CATG 4 cut(s) 421, 520, 595, 751
FaiI YATR 9 cut(s) 68, 378, 419, 513, 518, 573, 575, 593, 749
FaqI GGGAC 1 cut(s) 837
FatI CATG 4 cut(s) 417, 516, 591, 747
Fnu4HI GCNGC 3 cut(s) 779, 981, 1033
FokI GGATG 5 cut(s) 160, 256, 608, 694, 813
FriOI GRGCYC 2 cut(s) 331, 407
Fsp4HI GCNGC 3 cut(s) 779, 981, 1033
FspBI CTAG 1 cut(s) 522
GluI GCNGC 3 cut(s) 779, 981, 1033
HaeIII GGCC 5 cut(s) 285, 482, 754, 931, 1032
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 637
Hin1II CATG 4 cut(s) 421, 520, 595, 751
HinfI GANTC 6 cut(s) 20, 497, 587, 788, 794, 833
HpaII CCGG 1 cut(s) 102
HphI GGTGA 4 cut(s) 213, 477, 500, 617
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 9 cut(s) 311, 399, 451, 496, 616, 632, 642, 787, 793
Hpy188III TCNNGA 3 cut(s) 324, 798, 841
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 3 cut(s) 18, 407, 627
HpyCH4III ACNGT 1 cut(s) 862
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 6 cut(s) 560, 577, 584, 781, 964, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 295, 770
HpyF3I CTNAG 4 cut(s) 274, 549, 721, 786
HpySE526I ACGT 1 cut(s) 526
Hsp92I GRCGYC 1 cut(s) 637
Hsp92II CATG 4 cut(s) 421, 520, 595, 751
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 166, 311
LmnI GCTCC 3 cut(s) 334, 708, 945
Lsp1109I GCAGC 2 cut(s) 765, 992
LweI GCATC 2 cut(s) 929, 992
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 5 cut(s) 343, 506, 667, 841, 856
MalI GATC 2 cut(s) 168, 313
MboI GATC 2 cut(s) 166, 311
MboII GAAGA 4 cut(s) 161, 199, 225, 464
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 4 cut(s) 75, 331, 362, 407
MlsI TGGCCA 2 cut(s) 285, 931
MluCI AATT 3 cut(s) 61, 292, 542
MluNI TGGCCA 2 cut(s) 285, 931
MlyI GAGTC 4 cut(s) 29, 581, 797, 842
Mox20I TGGCCA 2 cut(s) 285, 931
MreI CGCCGGCG 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 217
MscI TGGCCA 2 cut(s) 285, 931
MseI TTAA 3 cut(s) 141, 686, 893
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 2 cut(s) 285, 931
MspA1I CMGCKG 1 cut(s) 1035
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 542
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 107, 295, 770
NaeI GCCGGC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 591
NdeII GATC 2 cut(s) 166, 311
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 421, 520, 595, 751
NmeAIII GCCGAG 1 cut(s) 794
NmuCI GTSAC 5 cut(s) 343, 506, 667, 841, 856
PceI AGGCCT 1 cut(s) 482
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 497, 794
PflMI CCANNNNNTGG 1 cut(s) 1028
PkrI GCNGC 3 cut(s) 780, 982, 1034
PleI GAGTC 4 cut(s) 28, 581, 796, 841
PpsI GAGTC 4 cut(s) 28, 581, 796, 841
Psp124BI GAGCTC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 331
SaqAI TTAA 3 cut(s) 141, 686, 893
SatI GCNGC 3 cut(s) 779, 981, 1033
Sau3AI GATC 2 cut(s) 166, 311
SchI GAGTC 4 cut(s) 29, 581, 797, 842
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 4 cut(s) 75, 331, 362, 407
SfaNI GCATC 2 cut(s) 929, 992
SfcI CTRYAG 3 cut(s) 162, 315, 348
SgrAI CRCCGGYG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 3 cut(s) 61, 292, 542
SseBI AGGCCT 1 cut(s) 482
SsiI CCGC 1 cut(s) 1033
SspMI CTAG 1 cut(s) 522
SstI GAGCTC 1 cut(s) 331
StuI AGGCCT 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 2 cut(s) 333, 591
TaaI ACNGT 1 cut(s) 862
TaiI ACGT 1 cut(s) 529
TaqI TCGA 1 cut(s) 459
TasI AATT 3 cut(s) 61, 292, 542
TauI GCSGC 1 cut(s) 1035
TfiI GAWTC 2 cut(s) 497, 794
Tru1I TTAA 3 cut(s) 141, 686, 893
Tru9I TTAA 3 cut(s) 141, 686, 893
TscAI CASTG 4 cut(s) 265, 718, 825, 853
TseFI GTSAC 5 cut(s) 343, 506, 667, 841, 856
TseI GCWGC 2 cut(s) 778, 980
Tsp45I GTSAC 5 cut(s) 343, 506, 667, 841, 856
TspDTI ATGAA 2 cut(s) 164, 867
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 4 cut(s) 265, 718, 825, 853
Van91I CCANNNNNTGG 1 cut(s) 1028
XagI CCTNNNNNAGG 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 939
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.