MD06G1239300.v1.1

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013680
Physical Location & Seq
Forward (+)
36973777 .. 36976880
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1239300.v1.1.491

Sequence Viewer

Length: 1152 bp
ATGGATCTGCTTGTGTCGGTTTGCTTTCTGAAAAACTCTCCACTCCCAACCAAGACTTTGGATTTGAGGCAGGCAAGCCCACAGCTGCCAAGGGACGAGAGATCGGAGAAAAGTGGCAGATCAATTATGTCTCCTTCCAATCCAAGGTCGGTCGAGAATACTGGAGGAGGCGGCGGCGGCGGCAATAATTACATAGAGCACCAAGTCTCCAAGATGGACACACTCGCCGGCGTTGCCATCAAATACGGCGTCGAGGTGTGTGACATTAAAAGGATGAATGGGTTTGCTACAGATCTTCAAATGTTTGCTTTGAACACCTTGAAAATACCTTTGCCCGGAAGACATCCTCCCTCTATTCCTTCTCCAACCACAACCACCGCCTCAAGAGAAAACGACACTGAAAAATCCACTCCTTGTCTTGGCCAATCTATTGGTTCAAAACCTCCCAAAGAGAAGAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAAGATCTCCGAATTTGAAGGGAAAAGCGCAAGGCATGGAGATGGCTGTCTACAGAAGTCGAAGTTCTGAATCCTTTGATCAAAGCGCGGTCTCACCATTGTCTGACCCTCTAAGTCACCCTAACAAGTCCAGACATTCTTCCATTGATCTCTTGTCTGAGAATGGTGCAATGGCTGATTACCTTGCAGCACAACTTGGAGATGGGCAGGGTGAGAAATCTGATGACAAATCAGTCCGGAGGCGTCAGAAAGCTGAAGTTGATGATGGGGCAGTCACACCAGAAAGGTTGTTAAAGGGGGAAAACAGTGGTGGGACCAGAGCTTCAACAGGAAATGGTTTAGCCATGAGGCAGAAATCATCAAGCCGAGCATCGTTGCAATCTGATTCAGATTCAGGATGGCTGAACTCTGTTCCGGTGGGAATGGGGGATTCTATCACTATCATGACAGACGACATGGCTGTGGTTCGCAAGTCATCAAGCACACCGAGCTTAAAAGACCAAGACAGTAATAACACGGTATCAATTTGGCCAACTTCAAGGTGGAGCTTGACACAAGACCTTCAAGCTCTCTCAACTGCAACGATGGCCAGACCAATCTTTGATGGCTTACCAAAGCCAATAACTGGCCGCTGGAAAAAAGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

384

Amino Acids

41.21

Weight (kDa)

9.27

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 731
AccB7I CCANNNNNTGG 1 cut(s) 1124
AccI GTMKAC 1 cut(s) 549
AccII CGCG 1 cut(s) 587
AccIII TCCGGA 1 cut(s) 735
AciI CCGC 7 cut(s) 171, 174, 177, 180, 378, 587, 1129
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 4 cut(s) 421, 1028, 1086, 1126
AcsI RAATTY 1 cut(s) 511
AcuI CTGAAG 1 cut(s) 774
AcyI GRCGYC 2 cut(s) 249, 742
AfiI CCNNNNNNNGG 4 cut(s) 144, 335, 419, 1124
AgsI TTSAA 8 cut(s) 299, 313, 322, 438, 517, 825, 1038, 1064
AluBI AGCT 6 cut(s) 85, 752, 821, 990, 1047, 1067
AluI AGCT 6 cut(s) 85, 752, 821, 990, 1047, 1067
Alw21I GWGCWC 2 cut(s) 201, 479
Alw26I GTCTC 3 cut(s) 135, 211, 595
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 735
AoxI GGCC 4 cut(s) 421, 1028, 1086, 1126
ApeKI GCWGC 2 cut(s) 85, 686
ApoI RAATTY 1 cut(s) 511
ArsI GACNNNNNNTTYG 4 cut(s) 46, 78, 234, 266
AspLEI GCGC 2 cut(s) 529, 587
AspS9I GGNCC 1 cut(s) 813
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 3 cut(s) 585, 608, 722
AvaII GGWCC 1 cut(s) 813
BalI TGGCCA 3 cut(s) 423, 1030, 1088
BbsI GAAGAC 1 cut(s) 346
Bbv12I GWGCWC 2 cut(s) 201, 479
BbvI GCAGC 2 cut(s) 72, 698
BccI CCATC 8 cut(s) 208, 245, 535, 695, 758, 891, 1078, 1097
BceAI ACGGC 1 cut(s) 262
BclI TGATCA 1 cut(s) 577
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 3 cut(s) 135, 211, 595
BfmI CTRYAG 3 cut(s) 288, 465, 550
BglII AGATCT 2 cut(s) 292, 503
BisI GCNGC 7 cut(s) 86, 172, 175, 178, 181, 687, 1129
BlsI GCNGC 7 cut(s) 87, 173, 176, 179, 182, 688, 1130
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 813
BmgT120I GGNCC 1 cut(s) 813
BmiI GGNNCC 1 cut(s) 814
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 878
BpiI GAAGAC 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 336
BsaHI GRCGYC 2 cut(s) 249, 742
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 2 cut(s) 89, 143
BsaWI WCCGGW 2 cut(s) 735, 913
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 335, 419, 1124
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 166, 1129
Bse3DI GCAATG 2 cut(s) 477, 675
BseAI TCCGGA 1 cut(s) 735
BseDI CCNNGG 2 cut(s) 89, 143
BseGI GGATG 3 cut(s) 279, 343, 902
BseLI CCNNNNNNNGG 4 cut(s) 144, 335, 419, 1124
BseMI GCAATG 2 cut(s) 477, 675
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 2 cut(s) 166, 1129
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 72, 698
Bsh1236I CGCG 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 4 cut(s) 423, 1030, 1088, 1128
BsiEI CGRYCG 1 cut(s) 153
BsiHKAI GWGCWC 2 cut(s) 201, 479
BsiSI CCGG 4 cut(s) 228, 336, 736, 914
BslFI GGGAC 2 cut(s) 107, 826
BslI CCNNNNNNNGG 4 cut(s) 144, 335, 419, 1124
BsmAI GTCTC 3 cut(s) 135, 211, 595
BsmFI GGGAC 2 cut(s) 107, 826
BsnI GGCC 4 cut(s) 423, 1030, 1088, 1128
Bso31I GGTCTC 1 cut(s) 595
Bsp1286I GDGCHC 2 cut(s) 201, 479
Bsp13I TCCGGA 1 cut(s) 735
Bsp143I GATC 7 cut(s) 4, 101, 119, 292, 503, 577, 646
BspACI CCGC 7 cut(s) 171, 174, 177, 180, 378, 587, 1129
BspANI GGCC 4 cut(s) 423, 1030, 1088, 1128
BspCNI CTCAG 1 cut(s) 649
BspEI TCCGGA 1 cut(s) 735
BspFNI CGCG 1 cut(s) 587
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 1 cut(s) 814
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 595
BsrDI GCAATG 2 cut(s) 477, 675
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 2 cut(s) 166, 1129
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 89, 143
BssMI GATC 7 cut(s) 4, 101, 119, 292, 503, 577, 646
BssNI GRCGYC 2 cut(s) 249, 742
BssT1I CCWWGG 2 cut(s) 89, 143
Bst4CI ACNGT 3 cut(s) 806, 1007, 1018
BstACI GRCGYC 2 cut(s) 249, 742
BstC8I GCNNGC 3 cut(s) 72, 76, 229
BstDEI CTNAG 3 cut(s) 500, 611, 657
BstF5I GGATG 3 cut(s) 279, 343, 902
BstFNI CGCG 1 cut(s) 587
BstHHI GCGC 2 cut(s) 529, 587
BstKTI GATC 7 cut(s) 7, 104, 122, 295, 506, 580, 649
BstMAI GTCTC 3 cut(s) 135, 211, 595
BstMBI GATC 7 cut(s) 4, 101, 119, 292, 503, 577, 646
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 5 cut(s) 177, 180, 233, 987, 1085
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 3 cut(s) 288, 465, 550
BstUI CGCG 1 cut(s) 587
BstV1I GCAGC 2 cut(s) 72, 698
BstV2I GAAGAC 1 cut(s) 346
BstX2I RGATCY 3 cut(s) 4, 292, 503
BstXI CCANNNNNNTGG 2 cut(s) 58, 431
BstYI RGATCY 3 cut(s) 4, 292, 503
BsuRI GGCC 4 cut(s) 423, 1030, 1088, 1128
BtsCI GGATG 3 cut(s) 279, 343, 902
BtsIMutI CAGTG 2 cut(s) 396, 811
Cac8I GCNNGC 3 cut(s) 72, 76, 229
CciI TCATGA 1 cut(s) 942
CfoI GCGC 2 cut(s) 529, 587
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 813
CseI GACGC 2 cut(s) 238, 731
CviAII CATG 4 cut(s) 535, 844, 943, 955
DdeI CTNAG 3 cut(s) 500, 611, 657
DpnI GATC 7 cut(s) 6, 103, 121, 294, 505, 579, 648
DpnII GATC 7 cut(s) 4, 101, 119, 292, 503, 577, 646
DrdI GACNNNNNNGTC 1 cut(s) 731
DseDI GACNNNNNNGTC 1 cut(s) 731
EaeI YGGCCR 4 cut(s) 421, 1028, 1086, 1126
Eco130I CCWWGG 2 cut(s) 89, 143
Eco31I GGTCTC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 813
Eco57I CTGAAG 1 cut(s) 774
EcoT14I CCWWGG 2 cut(s) 89, 143
ErhI CCWWGG 2 cut(s) 89, 143
FaeI CATG 4 cut(s) 538, 847, 946, 958
FaiI YATR 7 cut(s) 128, 194, 495, 536, 845, 944, 956
FaqI GGGAC 2 cut(s) 107, 826
FatI CATG 4 cut(s) 534, 843, 942, 954
FbaI TGATCA 1 cut(s) 577
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 7 cut(s) 86, 172, 175, 178, 181, 687, 1129
FokI GGATG 3 cut(s) 286, 330, 909
Fsp4HI GCNGC 7 cut(s) 86, 172, 175, 178, 181, 687, 1129
GlaI GCGC 2 cut(s) 528, 586
GluI GCNGC 7 cut(s) 86, 172, 175, 178, 181, 687, 1129
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 4 cut(s) 423, 1030, 1088, 1128
HapII CCGG 4 cut(s) 228, 336, 736, 914
HgaI GACGC 2 cut(s) 238, 731
HhaI GCGC 2 cut(s) 529, 587
Hin1I GRCGYC 2 cut(s) 249, 742
Hin1II CATG 4 cut(s) 538, 847, 946, 958
Hin6I GCGC 2 cut(s) 527, 585
HinP1I GCGC 2 cut(s) 527, 585
HinfI GANTC 4 cut(s) 569, 884, 890, 929
HpaII CCGG 4 cut(s) 228, 336, 736, 914
HphI GGTGA 3 cut(s) 585, 608, 722
Hpy166II GTNNAC 1 cut(s) 550
Hpy188III TCNNGA 6 cut(s) 154, 384, 630, 736, 894, 943
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 5 cut(s) 144, 369, 451, 511, 1070
HpyCH4III ACNGT 3 cut(s) 806, 1007, 1018
HpyCH4V TGCA 4 cut(s) 668, 686, 877, 1079
HpyF10VI GCNNNNNNNGC 5 cut(s) 177, 180, 233, 987, 1085
HpyF3I CTNAG 3 cut(s) 500, 611, 657
Hsp92I GRCGYC 2 cut(s) 249, 742
Hsp92II CATG 4 cut(s) 538, 847, 946, 958
HspAI GCGC 2 cut(s) 527, 585
Kpn2I TCCGGA 1 cut(s) 735
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 7 cut(s) 4, 101, 119, 292, 503, 577, 646
LmnI GCTCC 1 cut(s) 1044
Lsp1109I GCAGC 2 cut(s) 72, 698
LweI GCATC 1 cut(s) 878
MaeIII GTNAC 4 cut(s) 260, 460, 614, 772
MalI GATC 7 cut(s) 6, 103, 121, 294, 505, 579, 648
MboI GATC 7 cut(s) 4, 101, 119, 292, 503, 577, 646
MboII GAAGA 4 cut(s) 287, 351, 466, 630
MflI RGATCY 3 cut(s) 4, 292, 503
MhlI GDGCHC 2 cut(s) 201, 479
MlsI TGGCCA 3 cut(s) 423, 1030, 1088
MluCI AATT 4 cut(s) 123, 187, 511, 1023
MluNI TGGCCA 3 cut(s) 423, 1030, 1088
MmeI TCCRAC 1 cut(s) 389
Mox20I TGGCCA 3 cut(s) 423, 1030, 1088
MreI CGCCGGCG 1 cut(s) 227
MroI TCCGGA 1 cut(s) 735
MroNI GCCGGC 1 cut(s) 227
MscI TGGCCA 3 cut(s) 423, 1030, 1088
MseI TTAA 3 cut(s) 267, 791, 992
MslI CAYNNNNRTG 3 cut(s) 539, 941, 959
Msp20I TGGCCA 3 cut(s) 423, 1030, 1088
MspA1I CMGCKG 2 cut(s) 85, 1131
MspI CCGG 4 cut(s) 228, 336, 736, 914
MspR9I CCNGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 587
MwoI GCNNNNNNNGC 5 cut(s) 177, 180, 233, 987, 1085
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 336
NdeII GATC 7 cut(s) 4, 101, 119, 292, 503, 577, 646
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 4 cut(s) 538, 847, 946, 958
NlaIV GGNNCC 1 cut(s) 814
NmeAIII GCCGAG 1 cut(s) 890
NmuCI GTSAC 4 cut(s) 260, 460, 614, 772
PagI TCATGA 1 cut(s) 942
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 4 cut(s) 569, 884, 890, 929
PflMI CCANNNNNTGG 1 cut(s) 1124
PkrI GCNGC 7 cut(s) 87, 173, 176, 179, 182, 688, 1130
PspN4I GGNNCC 1 cut(s) 814
PspPI GGNCC 1 cut(s) 813
PsuI RGATCY 3 cut(s) 4, 292, 503
PvuII CAGCTG 1 cut(s) 85
RseI CAYNNNNRTG 3 cut(s) 539, 941, 959
SaqAI TTAA 3 cut(s) 267, 791, 992
SatI GCNGC 7 cut(s) 86, 172, 175, 178, 181, 687, 1129
Sau3AI GATC 7 cut(s) 4, 101, 119, 292, 503, 577, 646
Sau96I GGNCC 1 cut(s) 813
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 2 cut(s) 201, 479
SfaNI GCATC 1 cut(s) 878
SfcI CTRYAG 3 cut(s) 288, 465, 550
SgrAI CRCCGGYG 1 cut(s) 227
SinI GGWCC 1 cut(s) 813
SmiMI CAYNNNNRTG 3 cut(s) 539, 941, 959
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 4 cut(s) 123, 187, 511, 1023
SsiI CCGC 7 cut(s) 171, 174, 177, 180, 378, 587, 1129
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 2 cut(s) 89, 143
TaaI ACNGT 3 cut(s) 806, 1007, 1018
TaqI TCGA 3 cut(s) 153, 252, 559
TaqII GACCGA 1 cut(s) 139
TasI AATT 4 cut(s) 123, 187, 511, 1023
TauI GCSGC 5 cut(s) 174, 177, 180, 183, 1131
TfiI GAWTC 4 cut(s) 569, 884, 890, 929
Tru1I TTAA 3 cut(s) 267, 791, 992
Tru9I TTAA 3 cut(s) 267, 791, 992
TscAI CASTG 2 cut(s) 403, 811
TseFI GTSAC 4 cut(s) 260, 460, 614, 772
TseI GCWGC 2 cut(s) 85, 686
Tsp45I GTSAC 4 cut(s) 260, 460, 614, 772
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 403, 811
Van91I CCANNNNNTGG 1 cut(s) 1124
VpaK11BI GGWCC 1 cut(s) 813
XapI RAATTY 1 cut(s) 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 1038
XmiI GTMKAC 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.