Rh7DG003700

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013680
Physical Location & Seq
Reverse (-)
333120 .. 336051
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG003700.1

Sequence Viewer

Length: 924 bp
ATGAATCAGGTCGCTGACATTAAAAGGATGAATGGCTTTGCTACAGATCTTCAAATGTTTGCTTTGAAGACCTTGAAAATACCTTTACCAGGAAGACATTCACCATCTACTGCTTCTCTTTCTCCACAAGAAAACAACACTGAAAAGTCATCCTCAGGTCTTGGCCAGCCACCATTCCGATCTGTAGGTTCAAGAGCTCCCAAGGATAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTGAAACCTCCAAATCGGAGGGGCTCAACTGAAGGCATGGAGATGGCTGTTTACAGAAGTAGAAGTTCAGAAGACTTCGATGATGGGTTGTTGTCAAAGGCCTCACCATTTTCTGATTCTCAAAGTCACCATAACATGACTAGACGTTTTTCTGTTGGTCAATTGACTGAGAATGGTGCAATGGCTGATTATATGCACTTTGCAGACTCCATGGATGGGGAGGGTGAGAAATCTGATGATAAGTCAGTCCGAAGGCGTCAGAAAACTGAAGTTGAAAATGGGAATGTCACACCAGAGAGGATGTTAAAAGGGGAAAAAAGTGGTGGGAGCAGTGGTTTCTCAGCCTCAACGGGAAAGGGTTTAGCCATGAGGCAGAAATCAGCAAGCCGAGCAGTGCTACAATCGGAGTCAGATTCAGGATGGTTGAACTCTATCCCAGTGGGACTGGGAGAGTCTATCGTGACCACTGATGAAGTGACTGTTGTTCGCAAATCATCAAGCACACCAAGTTTAAAAGAGGAGGAAAATAACAGCACAGCATCAGTTTGGCCAACTTCAAGGTGGAGCTTGAAAACAGACTTGCAAGCTCTTTCAAATGCAGCATCTATTACCAGACCAATCTTTGATGGCTTGCCAAAACCAATAACCGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

307

Amino Acids

33.36

Weight (kDa)

9.39

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 901
AcoI YGGCCR 3 cut(s) 163, 797, 898
AcuI CTGAAG 2 cut(s) 300, 537
AcyI GRCGYC 1 cut(s) 505
AfiI CCNNNNNNNGG 4 cut(s) 89, 465, 896, 903
AgsI TTSAA 9 cut(s) 53, 67, 76, 192, 524, 676, 807, 820, 843
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 3 cut(s) 197, 816, 836
AluI AGCT 3 cut(s) 197, 816, 836
Alw21I GWGCWC 2 cut(s) 199, 230
AoxI GGCC 4 cut(s) 163, 348, 797, 898
ApeKI GCWGC 1 cut(s) 848
Asp700I GAANNNNTTC 1 cut(s) 97
AsuHPI GGTGA 4 cut(s) 93, 345, 368, 485
AxyI CCTNAGG 1 cut(s) 154
BalI TGGCCA 2 cut(s) 165, 799
BanII GRGCYC 2 cut(s) 199, 275
BbsI GAAGAC 3 cut(s) 74, 100, 327
Bbv12I GWGCWC 2 cut(s) 199, 230
BbvI GCAGC 1 cut(s) 860
BccI CCATC 6 cut(s) 112, 286, 326, 458, 663, 869
BciT130I CCWGG 1 cut(s) 90
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 3 cut(s) 42, 183, 216
BglII AGATCT 1 cut(s) 46
BisI GCNGC 2 cut(s) 849, 901
BlsI GCNGC 2 cut(s) 850, 902
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BmrI ACTGGG 2 cut(s) 680, 704
BmsI GCATC 2 cut(s) 797, 860
BmuI ACTGGG 2 cut(s) 680, 704
BpiI GAAGAC 3 cut(s) 74, 100, 327
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 2 cut(s) 201, 459
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 465, 896, 903
Bse118I RCCGGY 1 cut(s) 896
Bse1I ACTGG 2 cut(s) 686, 699
Bse21I CCTNAGG 1 cut(s) 154
Bse3DI GCAATG 2 cut(s) 228, 435
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 201, 459
BseGI GGATG 5 cut(s) 33, 149, 469, 555, 674
BseLI CCNNNNNNNGG 4 cut(s) 89, 465, 896, 903
BseMI GCAATG 2 cut(s) 228, 435
BseMII CTCAG 3 cut(s) 168, 408, 603
BseNI ACTGG 2 cut(s) 686, 699
BseRI GAGGAG 1 cut(s) 782
BseX3I CGGCCG 1 cut(s) 898
BseXI GCAGC 1 cut(s) 860
Bsh1285I CGRYCG 1 cut(s) 901
BshFI GGCC 4 cut(s) 165, 350, 799, 900
BsiEI CGRYCG 1 cut(s) 901
BsiHKAI GWGCWC 2 cut(s) 199, 230
BsiSI CCGG 1 cut(s) 897
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 4 cut(s) 89, 465, 896, 903
BsmFI GGGAC 1 cut(s) 705
BsnI GGCC 4 cut(s) 165, 350, 799, 900
Bsp1286I GDGCHC 3 cut(s) 199, 230, 275
Bsp143I GATC 2 cut(s) 46, 179
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 1 cut(s) 901
BspANI GGCC 4 cut(s) 165, 350, 799, 900
BspCNI CTCAG 3 cut(s) 167, 409, 602
BsrDI GCAATG 2 cut(s) 228, 435
BsrFI RCCGGY 1 cut(s) 896
BsrI ACTGG 2 cut(s) 686, 699
BssAI RCCGGY 1 cut(s) 896
BssECI CCNNGG 2 cut(s) 201, 459
BssMI GATC 2 cut(s) 46, 179
BssNI GRCGYC 1 cut(s) 505
BssT1I CCWWGG 2 cut(s) 201, 459
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 730
BstACI GRCGYC 1 cut(s) 505
BstC8I GCNNGC 4 cut(s) 167, 634, 834, 881
BstDEI CTNAG 3 cut(s) 154, 417, 589
BstDSI CCRYGG 1 cut(s) 459
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 5 cut(s) 33, 149, 469, 555, 674
BstKTI GATC 2 cut(s) 49, 182
BstMBI GATC 2 cut(s) 46, 179
BstMCI CGRYCG 1 cut(s) 901
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 3 cut(s) 42, 183, 216
BstV1I GCAGC 1 cut(s) 860
BstV2I GAAGAC 3 cut(s) 74, 100, 327
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BstZI CGGCCG 1 cut(s) 898
Bsu36I CCTNAGG 1 cut(s) 154
BsuRI GGCC 4 cut(s) 165, 350, 799, 900
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 5 cut(s) 33, 149, 469, 555, 674
BtsI GCAGTG 2 cut(s) 586, 648
BtsIMutI CAGTG 5 cut(s) 138, 586, 648, 693, 714
Cac8I GCNNGC 4 cut(s) 167, 634, 834, 881
Cfr10I RCCGGY 1 cut(s) 896
CseI GACGC 1 cut(s) 494
CviAII CATG 4 cut(s) 286, 385, 460, 616
DdeI CTNAG 3 cut(s) 154, 417, 589
DpnI GATC 2 cut(s) 48, 181
DpnII GATC 2 cut(s) 46, 179
DraI TTTAAA 1 cut(s) 762
EaeI YGGCCR 3 cut(s) 163, 797, 898
EagI CGGCCG 1 cut(s) 898
Ecl136II GAGCTC 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 898
Eco130I CCWWGG 2 cut(s) 201, 459
Eco147I AGGCCT 1 cut(s) 350
Eco24I GRGCYC 2 cut(s) 199, 275
Eco52I CGGCCG 1 cut(s) 898
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 300, 537
Eco81I CCTNAGG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 2 cut(s) 201, 459
EcoT38I GRGCYC 2 cut(s) 199, 275
ErhI CCWWGG 2 cut(s) 201, 459
FaeI CATG 4 cut(s) 289, 388, 463, 619
FaiI YATR 8 cut(s) 246, 287, 381, 386, 441, 443, 461, 617
FaqI GGGAC 1 cut(s) 705
FatI CATG 4 cut(s) 285, 384, 459, 615
Fnu4HI GCNGC 2 cut(s) 849, 901
FokI GGATG 5 cut(s) 40, 136, 476, 562, 681
FriOI GRGCYC 2 cut(s) 199, 275
Fsp4HI GCNGC 2 cut(s) 849, 901
FspBI CTAG 1 cut(s) 390
GluI GCNGC 2 cut(s) 849, 901
HaeIII GGCC 4 cut(s) 165, 350, 799, 900
HapII CCGG 1 cut(s) 897
HgaI GACGC 1 cut(s) 494
Hin1I GRCGYC 1 cut(s) 505
Hin1II CATG 4 cut(s) 289, 388, 463, 619
HinfI GANTC 6 cut(s) 4, 365, 455, 656, 662, 701
HpaII CCGG 1 cut(s) 897
HphI GGTGA 4 cut(s) 93, 345, 368, 485
Hpy166II GTNNAC 1 cut(s) 301
Hpy188III TCNNGA 3 cut(s) 192, 666, 709
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 275, 495
HpyCH4III ACNGT 1 cut(s) 730
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 5 cut(s) 428, 445, 452, 832, 848
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpyF3I CTNAG 3 cut(s) 154, 417, 589
HpySE526I ACGT 1 cut(s) 394
Hsp92I GRCGYC 1 cut(s) 505
Hsp92II CATG 4 cut(s) 289, 388, 463, 619
Kzo9I GATC 2 cut(s) 46, 179
LmnI GCTCC 3 cut(s) 202, 576, 813
Lsp1109I GCAGC 1 cut(s) 860
LweI GCATC 2 cut(s) 797, 860
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 5 cut(s) 211, 374, 535, 709, 724
MalI GATC 2 cut(s) 48, 181
MboI GATC 2 cut(s) 46, 179
MboII GAAGA 4 cut(s) 41, 79, 105, 332
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 3 cut(s) 199, 230, 275
MlsI TGGCCA 2 cut(s) 165, 799
MluCI AATT 1 cut(s) 410
MluNI TGGCCA 2 cut(s) 165, 799
MlyI GAGTC 3 cut(s) 449, 665, 710
Mox20I TGGCCA 2 cut(s) 165, 799
MroXI GAANNNNTTC 1 cut(s) 97
MscI TGGCCA 2 cut(s) 165, 799
MseI TTAA 3 cut(s) 21, 554, 761
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 2 cut(s) 165, 799
MspA1I CMGCKG 1 cut(s) 903
MspI CCGG 1 cut(s) 897
MspR9I CCNGG 1 cut(s) 90
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 638
NcoI CCATGG 1 cut(s) 459
NdeII GATC 2 cut(s) 46, 179
NlaIII CATG 4 cut(s) 289, 388, 463, 619
NmeAIII GCCGAG 1 cut(s) 662
NmuCI GTSAC 5 cut(s) 211, 374, 535, 709, 724
PceI AGGCCT 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 3 cut(s) 4, 365, 662
PkrI GCNGC 2 cut(s) 850, 902
PleI GAGTC 3 cut(s) 449, 664, 709
PpsI GAGTC 3 cut(s) 449, 664, 709
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 290
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 3 cut(s) 21, 554, 761
SatI GCNGC 2 cut(s) 849, 901
Sau3AI GATC 2 cut(s) 46, 179
SchI GAGTC 3 cut(s) 449, 665, 710
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 3 cut(s) 199, 230, 275
SfaNI GCATC 2 cut(s) 797, 860
SfcI CTRYAG 3 cut(s) 42, 183, 216
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 1 cut(s) 410
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 1 cut(s) 901
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 199
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 2 cut(s) 201, 459
TaaI ACNGT 1 cut(s) 730
TaiI ACGT 1 cut(s) 397
TaqI TCGA 1 cut(s) 327
TasI AATT 1 cut(s) 410
TauI GCSGC 1 cut(s) 903
TfiI GAWTC 3 cut(s) 4, 365, 662
Tru1I TTAA 3 cut(s) 21, 554, 761
Tru9I TTAA 3 cut(s) 21, 554, 761
TscAI CASTG 5 cut(s) 145, 586, 648, 693, 721
TseFI GTSAC 5 cut(s) 211, 374, 535, 709, 724
TseI GCWGC 1 cut(s) 848
Tsp45I GTSAC 5 cut(s) 211, 374, 535, 709, 724
TspDTI ATGAA 3 cut(s) 17, 44, 735
TspRI CASTG 5 cut(s) 145, 586, 648, 693, 721
XagI CCTNNNNNAGG 1 cut(s) 87
XcmI CCANNNNNNNNNTGG 1 cut(s) 807
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.