Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Forward (+)

12267753 .. 12271107

Gene Structure 3355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20670.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCCTTTCTTCCTCTTCTTGCCTCTCCCTCTCTCCAATCTCAGCTCTCAAGATTGACTATGCTAAGAAGGCTATAAGACGTTGGAAGAATGATGGAAGGGAACAAAGGTTCAGTTTTTCACTTCAAAGTAATAACTCTGCACTCTTAGGTCAACAGATTGGGACAGCGGGAGCTCGTCAACACAAAGACTGGTGTTTTGTTGGTGGTTCAAGAGTTACTGTAAGACCAAAACTTGAGATATCCAGTGTGCATCGAAAAAGCTCCGGAGTATATGCCTCATGGTTGGCAACTTCTCAAATAGCTAGCACTGCTTTTACTTTGGGAACAATGGCGGTACTCCCATTTTATGGCCTCATGGTTCTTGCACCTCAAGCTGCACTGACAAAAGCATCCATTGAAAGCAATATACCGTATATTGTGCTTGGACTCCTCTATGCGTATTTGCTATACCTCTCTTGGACTCCAGAAACAATGCGGTTAATTTTTGCAAGTCAATACTGGCTGCCTGAGCTCCCAGGGATGGCAAAGATGTTCTCAAATGAGATGACATTAGCTTCTGCGTGGATCCACTTGTTGGTTGTTGATCTCTTTGCAGCAAGGCAGGTTTTTCGTGATGGATTGGAAAACCAAATGGAGACGCGCCATTCAATTTCTCTCTGTCTATTTTTCTGCCCCATTGGAATTCTTACTCATGTCATTACCAAAGCACTAACTAAAATTGCTGGAAGGTCCAGCACACACGAAATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

252

Amino Acids

27.87

Weight (kDa)

9.63

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA4-like	PF14108	104 - 232	4.3e-33	ABA DEFICIENT 4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	595
AccB7I	CCANNNNNTGG	2 cut(s)	350, 577
AccII	CGCG	1 cut(s)	643
AccIII	TCCGGA	1 cut(s)	266
AciI	CCGC	3 cut(s)	170, 335, 478
AclWI	GGATC	2 cut(s)	562, 575
AcsI	RAATTY	1 cut(s)	684
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	3 cut(s)	350, 523, 577
AgsI	TTSAA	4 cut(s)	128, 213, 401, 651
AjnI	CCWGG	1 cut(s)	517
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	7 cut(s)	47, 176, 264, 305, 377, 514, 557
AluI	AGCT	7 cut(s)	47, 176, 264, 305, 377, 514, 557
Alw21I	GWGCWC	2 cut(s)	178, 516
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	2 cut(s)	562, 575
Aor13HI	TCCGGA	1 cut(s)	266
AoxI	GGCC	2 cut(s)	3, 352
ApeKI	GCWGC	3 cut(s)	377, 505, 596
ApoI	RAATTY	1 cut(s)	684
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	2 cut(s)	4, 732
AsuNHI	GCTAGC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	732
BamHI	GGATCC	1 cut(s)	567
BanII	GRGCYC	2 cut(s)	178, 516
Bbv12I	GWGCWC	2 cut(s)	178, 516
BbvI	GCAGC	3 cut(s)	364, 492, 608
BccI	CCATC	3 cut(s)	89, 517, 611
BcgI	CGANNNNNNTGC	2 cut(s)	593, 627
BciT130I	CCWGG	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	595
BisI	GCNGC	3 cut(s)	378, 506, 597
BlsI	GCNGC	3 cut(s)	379, 507, 598
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	732
BmgT120I	GGNCC	2 cut(s)	4, 732
BmiI	GGNNCC	1 cut(s)	569
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	262, 401
BmtI	GCTAGC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	3 cut(s)	35, 257, 357
BsaJI	CCNNGG	2 cut(s)	517, 518
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 523, 577
Bse1I	ACTGG	3 cut(s)	197, 246, 506
BseAI	TCCGGA	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	517, 518
BseGI	GGATG	2 cut(s)	392, 528
BseLI	CCNNNNNNNGG	3 cut(s)	350, 523, 577
BseMII	CTCAG	2 cut(s)	57, 501
BseNI	ACTGG	3 cut(s)	197, 246, 506
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	3 cut(s)	364, 492, 608
BsgI	GTGCAG	2 cut(s)	126, 363
Bsh1236I	CGCG	1 cut(s)	643
BshFI	GGCC	2 cut(s)	5, 354
BsiHKAI	GWGCWC	2 cut(s)	178, 516
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	3 cut(s)	350, 523, 577
BsmAI	GTCTC	1 cut(s)	632
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	5, 354
Bsp1286I	GDGCHC	2 cut(s)	178, 516
Bsp13I	TCCGGA	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	567, 586
BspACI	CCGC	3 cut(s)	170, 335, 478
BspANI	GGCC	2 cut(s)	5, 354
BspCNI	CTCAG	2 cut(s)	56, 502
BspEI	TCCGGA	1 cut(s)	266
BspFNI	CGCG	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	569
BspMI	ACCTGC	1 cut(s)	595
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	562, 575
BsrI	ACTGG	3 cut(s)	197, 246, 506
BssECI	CCNNGG	2 cut(s)	517, 518
BssMI	GATC	2 cut(s)	567, 586
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	223, 414
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	4 cut(s)	43, 66, 148, 510
BstF5I	GGATG	2 cut(s)	392, 528
BstFNI	CGCG	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	2 cut(s)	570, 589
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	2 cut(s)	567, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 311, 374, 511
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	517
BstUI	CGCG	1 cut(s)	643
BstV1I	GCAGC	3 cut(s)	364, 492, 608
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
BsuRI	GGCC	2 cut(s)	5, 354
BtsCI	GGATG	2 cut(s)	392, 528
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	3 cut(s)	253, 309, 380
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	2 cut(s)	4, 732
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	3 cut(s)	282, 358, 695
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	4 cut(s)	43, 66, 148, 510
DpnI	GATC	2 cut(s)	569, 588
DpnII	GATC	2 cut(s)	567, 586
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Ecl136II	GAGCTC	2 cut(s)	176, 514
Eco24I	GRGCYC	2 cut(s)	178, 516
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	732
Eco53kI	GAGCTC	2 cut(s)	176, 514
EcoICRI	GAGCTC	2 cut(s)	176, 514
EcoRI	GAATTC	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	517
EcoRV	GATATC	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	2 cut(s)	178, 516
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	3 cut(s)	285, 361, 698
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	281, 357, 694
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	378, 506, 597
FokI	GGATG	2 cut(s)	379, 535
FriOI	GRGCYC	2 cut(s)	178, 516
Fsp4HI	GCNGC	3 cut(s)	378, 506, 597
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	3 cut(s)	378, 506, 597
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	5, 354
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	3 cut(s)	285, 361, 698
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HincII	GTYRAC	2 cut(s)	155, 182
HindII	GTYRAC	2 cut(s)	155, 182
HinfI	GANTC	2 cut(s)	429, 463
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	2 cut(s)	155, 182
Hpy188III	TCNNGA	5 cut(s)	52, 213, 267, 467, 614
Hpy8I	GTNNAC	2 cut(s)	155, 182
HpyAV	CCTTC	3 cut(s)	64, 93, 723
HpyCH4III	ACNGT	2 cut(s)	223, 414
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	7 cut(s)	143, 253, 368, 380, 491, 596, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 311, 374, 511
HpyF3I	CTNAG	4 cut(s)	43, 66, 148, 510
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	285, 361, 698
HspAI	GCGC	1 cut(s)	643
Kpn2I	TCCGGA	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	567, 586
LmnI	GCTCC	3 cut(s)	173, 269, 519
Lsp1109I	GCAGC	3 cut(s)	364, 492, 608
LweI	GCATC	2 cut(s)	262, 401
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	569, 588
MboI	GATC	2 cut(s)	567, 586
MboII	GAAGA	3 cut(s)	3, 9, 100
MflI	RGATCY	1 cut(s)	567
MhlI	GDGCHC	2 cut(s)	178, 516
MluCI	AATT	4 cut(s)	483, 651, 684, 720
MlyI	GAGTC	2 cut(s)	423, 457
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	25, 35, 41, 289, 365, 381, 443, 464
Mph1103I	ATGCAT	1 cut(s)	753
MroI	TCCGGA	1 cut(s)	266
MseI	TTAA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	4 cut(s)	71, 311, 374, 511
NdeII	GATC	2 cut(s)	567, 586
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	3 cut(s)	285, 361, 698
NlaIV	GGNNCC	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	753
PasI	CCCWGGG	1 cut(s)	518
PflMI	CCANNNNNTGG	2 cut(s)	350, 577
PkrI	GCNGC	3 cut(s)	379, 507, 598
PleI	GAGTC	2 cut(s)	423, 457
PpsI	GAGTC	2 cut(s)	423, 457
Psp124BI	GAGCTC	2 cut(s)	178, 516
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	2 cut(s)	4, 732
PsuI	RGATCY	1 cut(s)	567
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SacI	GAGCTC	2 cut(s)	178, 516
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	3 cut(s)	378, 506, 597
Sau3AI	GATC	2 cut(s)	567, 586
Sau96I	GGNCC	2 cut(s)	4, 732
SchI	GAGTC	2 cut(s)	423, 457
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	2 cut(s)	178, 516
SfaNI	GCATC	2 cut(s)	262, 401
SinI	GGWCC	1 cut(s)	732
SmlI	CTYRAG	3 cut(s)	50, 236, 372
SmoI	CTYRAG	3 cut(s)	50, 236, 372
Sse9I	AATT	4 cut(s)	483, 651, 684, 720
SsiI	CCGC	3 cut(s)	170, 335, 478
SspMI	CTAG	1 cut(s)	306
SstI	GAGCTC	2 cut(s)	178, 516
StyD4I	CCNGG	1 cut(s)	517
TaaI	ACNGT	2 cut(s)	223, 414
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	256
TasI	AATT	4 cut(s)	483, 651, 684, 720
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	3 cut(s)	253, 316, 387
TseI	GCWGC	3 cut(s)	377, 505, 596
TspRI	CASTG	3 cut(s)	253, 316, 387
Van91I	CCANNNNNTGG	2 cut(s)	350, 577
VpaK11BI	GGWCC	1 cut(s)	732
XapI	RAATTY	1 cut(s)	684
XspI	CTAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.