Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Reverse (-)

5730114 .. 5734290

Gene Structure 4177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G053500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCTTCTCTTCTTGCCTTTGCCAATCTCCACTCTCACCCAAGATTGACTGCGGCAAGAAGATTGTCAGGCCTTGGAGTAGTGATGGAAGGAAACAAAGGTTCACTTTTTCACTCGGAAGTAATAGCACAGAACTTGTTGGTCAACAGCTTGTGACAGTGGGAGCTCACTTACACAAGCACTGGAGTTTTGTGGGAGGTTCAAGAGTTACTGTGAGACCAGAACTTGAGAGATCCATTCCACTTCGAAAAAGCTCAGGAGTATATGCATCATGGTTCTCAACTTCTCAAATTGCTAGCACTGCTTTTACTTTGGGAACAACTGCAGTTCTCCCATTTTACACCCTCATGGTTCTGGCACCTAAAGCTGAACTAACGAAAATTTCTATGGAAAGTAGTATACCGTATATTGTCCTTGGCATTCTCTATGCTTATCTACTATACCTCTCTTGGACTCCTGAAACACTTCAGTTGATTTTCGCAAGTAAATACTGGCTTCCTGAGCTGCCTGGTATGGTAAGGATGTTTTCCAACGAGATGACATTAGCTTCTGCTTGGATTCACTTGTTGGCTGTTGATCTCTTTGCTGCAAGGCAGGTTTTTCACGATGGACAGGAAAACGAAATTGAGACCCGGCATTCAGTTTCTCTTTGCCTCTTTTTCTGCCCTATTGGAATTGTTACTCATGTCATTACCAAAGCACTGACTAAAAGTGCTGGAAGTTCCAGCACACGTAATATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

249

Amino Acids

27.56

Weight (kDa)

9.26

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	400
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	731
AgsI	TTSAA	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	6 cut(s)	151, 167, 255, 368, 505, 548
AluI	AGCT	6 cut(s)	151, 167, 255, 368, 505, 548
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	211, 623
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	2 cut(s)	3, 71
ApeKI	GCWGC	2 cut(s)	505, 587
ApoI	RAATTY	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	465
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	1 cut(s)	30
AsuII	TTCGAA	1 cut(s)	247
AsuNHI	GCTAGC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	492, 574
BccI	CCATC	2 cut(s)	80, 602
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	211, 623
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	3 cut(s)	55, 506, 588
BlsI	GCNGC	3 cut(s)	56, 507, 589
Bme1390I	CCNGG	2 cut(s)	510, 634
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	2 cut(s)	510, 634
BmsI	GCATC	1 cut(s)	278
BmtI	GCTAGC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	2 cut(s)	256, 501
Bpu14I	TTCGAA	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	634
BsaAI	YACGTR	1 cut(s)	734
BsaI	GGTCTC	2 cut(s)	211, 623
BsaJI	CCNNGG	2 cut(s)	74, 415
Bse1I	ACTGG	2 cut(s)	188, 497
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	74, 415
BseGI	GGATG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	270, 492
BseNI	ACTGG	2 cut(s)	188, 497
BseXI	GCAGC	2 cut(s)	492, 574
BshFI	GGCC	2 cut(s)	5, 73
BshNI	GGYRCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	634
BsmAI	GTCTC	2 cut(s)	211, 623
BsmI	GAATGC	2 cut(s)	420, 637
BsnI	GGCC	2 cut(s)	5, 73
Bso31I	GGTCTC	2 cut(s)	211, 623
Bsp119I	TTCGAA	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	233, 577
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	2 cut(s)	5, 73
BspCNI	CTCAG	2 cut(s)	269, 493
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	586
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	358
BspTNI	GGTCTC	2 cut(s)	211, 623
BsrI	ACTGG	2 cut(s)	188, 497
BssECI	CCNNGG	2 cut(s)	74, 415
BssMI	GATC	2 cut(s)	233, 577
BssNAI	GTATAC	1 cut(s)	401
BssT1I	CCWWGG	2 cut(s)	74, 415
Bst1107I	GTATAC	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	160, 214, 405
Bst6I	CTCTTC	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	2 cut(s)	256, 501
BstF5I	GGATG	1 cut(s)	528
BstKTI	GATC	2 cut(s)	236, 580
BstMAI	GTCTC	2 cut(s)	211, 623
BstMBI	GATC	2 cut(s)	233, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 365, 502
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	2 cut(s)	508, 632
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	492, 574
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BstZ17I	GTATAC	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	5, 73
BtsCI	GGATG	1 cut(s)	528
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	4 cut(s)	165, 181, 300, 701
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	298
CviAII	CATG	3 cut(s)	273, 349, 686
DdeI	CTNAG	2 cut(s)	256, 501
DpnI	GATC	2 cut(s)	235, 579
DpnII	GATC	2 cut(s)	233, 577
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	74, 415
Eco147I	AGGCCT	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	2 cut(s)	211, 623
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	74, 415
EcoT22I	ATGCAT	2 cut(s)	271, 744
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	74, 415
FaeI	CATG	3 cut(s)	276, 352, 689
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FatI	CATG	3 cut(s)	272, 348, 685
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	55, 506, 588
FokI	GGATG	1 cut(s)	535
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	3 cut(s)	55, 506, 588
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	3 cut(s)	55, 506, 588
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	5, 73
HapII	CCGG	1 cut(s)	634
Hin1II	CATG	3 cut(s)	276, 352, 689
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	2 cut(s)	454, 559
HpaII	CCGG	1 cut(s)	634
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	105, 146, 401
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	5 cut(s)	204, 258, 458, 500, 605
Hpy8I	GTNNAC	3 cut(s)	105, 146, 401
HpyAV	CCTTC	2 cut(s)	16, 84
HpyCH4III	ACNGT	3 cut(s)	160, 214, 405
HpyCH4IV	ACGT	1 cut(s)	733
HpyCH4V	TGCA	4 cut(s)	269, 326, 590, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 365, 502
HpyF3I	CTNAG	2 cut(s)	256, 501
HpySE526I	ACGT	1 cut(s)	733
Hsp92II	CATG	3 cut(s)	276, 352, 689
Kzo9I	GATC	2 cut(s)	233, 577
LmnI	GCTCC	1 cut(s)	164
Lsp1109I	GCAGC	2 cut(s)	492, 574
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	733
MaeIII	GTNAC	3 cut(s)	154, 208, 679
MalI	GATC	2 cut(s)	235, 579
MboI	GATC	2 cut(s)	233, 577
MboII	GAAGA	2 cut(s)	3, 73
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	4 cut(s)	291, 381, 624, 675
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	4 cut(s)	191, 356, 455, 665
Mph1103I	ATGCAT	2 cut(s)	271, 744
MroXI	GAANNNNTTC	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	1 cut(s)	634
MspR9I	CCNGG	2 cut(s)	510, 634
Mva1269I	GAATGC	2 cut(s)	420, 637
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	3 cut(s)	302, 365, 502
NciI	CCSGG	1 cut(s)	634
NdeII	GATC	2 cut(s)	233, 577
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	3 cut(s)	276, 352, 689
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	2 cut(s)	271, 744
NspV	TTCGAA	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	73
PctI	GAATGC	2 cut(s)	420, 637
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	56, 507, 589
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	734
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	169
SatI	GCNGC	3 cut(s)	55, 506, 588
Sau3AI	GATC	2 cut(s)	233, 577
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	510, 634
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	278
SfcI	CTRYAG	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	4 cut(s)	291, 381, 624, 675
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	169
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	508, 632
StyI	CCWWGG	2 cut(s)	74, 415
TaaI	ACNGT	3 cut(s)	160, 214, 405
TaiI	ACGT	1 cut(s)	736
TaqI	TCGA	1 cut(s)	247
TasI	AATT	4 cut(s)	291, 381, 624, 675
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	559
TscAI	CASTG	4 cut(s)	165, 188, 307, 708
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	505, 587
Tsp45I	GTSAC	1 cut(s)	154
TspRI	CASTG	4 cut(s)	165, 188, 307, 708
XapI	RAATTY	1 cut(s)	381
XmiI	GTMKAC	1 cut(s)	400
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	297
Zsp2I	ATGCAT	2 cut(s)	271, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.