Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Forward (+)

23419949 .. 23423917

Gene Structure 3969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG235700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATTTTTGCCATTACTTCTAATAATAGTAAGGCTGGTATTTCCTTTTCAGGGTTGGCAAGTTCTCAAATAGCTAGCACTGCTTTTACTTTGGGAACAGCAGCAGTACTCCCATTTTATGGCCTCATGGTTCTAGCACCTAAAGCTGAACTAGCAAAAGCATCTATTGAAAGCAGTATACCGTATATAGTGCTTGGACTTCTCTATGCTTATCTACTATACCTCTCTTGGACTCCAGAAACAATTCGATTGATTTTTGCAAGTCAATACTGGCTGCCTGAGCTGCCTGGGATTGCAAAGATGTTCTCGAATGAGATGACATTAGCTTCTGCGTGGATTCACTTGTTGGTTGTTGATCTCTTTGCAGCAAGGCAGGTTTATCACGATGGACTGGAAAACCAAATCGAGACGCGACATTCAATTTCCCTTTGTCTGTTTTTCTGCCCCATTGGAATTCTTACTCATGTCATTACCAAAGCACTGACTAAAAGTGCTGGAAAGTCCAGCACACACAAAATCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

174

Amino Acids

19.01

Weight (kDa)

8.55

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA4-like	PF14108	27 - 155	6.3e-35	ABA DEFICIENT 4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	412
AcsI	RAATTY	1 cut(s)	453
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	51, 119
AgsI	TTSAA	2 cut(s)	170, 420
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	4 cut(s)	74, 146, 283, 326
AluI	AGCT	4 cut(s)	74, 146, 283, 326
Alw26I	GTCTC	1 cut(s)	401
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	4 cut(s)	101, 274, 283, 365
ApoI	RAATTY	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	243
AsuNHI	GCTAGC	1 cut(s)	74
BbvI	GCAGC	4 cut(s)	113, 261, 270, 377
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	3 cut(s)	75, 134, 152
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	4 cut(s)	102, 275, 284, 366
BlsI	GCNGC	4 cut(s)	103, 276, 285, 367
BmcAI	AGTACT	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	170
BmtI	GCTAGC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 119
Bse1I	ACTGG	2 cut(s)	275, 396
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	287
BseLI	CCNNNNNNNGG	2 cut(s)	51, 119
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	275, 396
BseXI	GCAGC	4 cut(s)	113, 261, 270, 377
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	51, 119
BsmAI	GTCTC	1 cut(s)	401
BsmBI	CGTCTC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	355
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	364
BspOI	GCTAGC	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	275, 396
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	355
BssNAI	GTATAC	1 cut(s)	179
Bst1107I	GTATAC	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	412
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 143, 152, 280, 283
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	4 cut(s)	113, 261, 270, 377
BstZ17I	GTATAC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 479
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	76
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	127, 464
CviJI	RGCY	7 cut(s)	35, 74, 123, 146, 274, 283, 326
CviKI_1	RGCY	7 cut(s)	35, 74, 123, 146, 274, 283, 326
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	2 cut(s)	130, 467
FaiI	YATR	8 cut(s)	120, 128, 179, 186, 188, 207, 220, 465
FatI	CATG	2 cut(s)	126, 463
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	4 cut(s)	102, 275, 284, 366
Fsp4HI	GCNGC	4 cut(s)	102, 275, 284, 366
FspBI	CTAG	3 cut(s)	75, 134, 152
GluI	GCNGC	4 cut(s)	102, 275, 284, 366
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	123
HgaI	GACGC	1 cut(s)	418
Hin1II	CATG	2 cut(s)	130, 467
HinfI	GANTC	2 cut(s)	232, 337
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188III	TCNNGA	4 cut(s)	236, 307, 383, 406
Hpy8I	GTNNAC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	260, 296, 365
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 143, 152, 280, 283
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	130, 467
Kzo9I	GATC	1 cut(s)	355
Lsp1109I	GCAGC	4 cut(s)	113, 261, 270, 377
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	3 cut(s)	75, 134, 152
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MluCI	AATT	3 cut(s)	243, 420, 453
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	2 cut(s)	134, 233
MroXI	GAANNNNTTC	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	5 cut(s)	80, 143, 152, 280, 283
NdeII	GATC	1 cut(s)	355
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	130, 467
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	103, 276, 285, 367
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SatI	GCNGC	4 cut(s)	102, 275, 284, 366
Sau3AI	GATC	1 cut(s)	355
ScaI	AGTACT	1 cut(s)	108
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	7 cut(s)	76, 142, 148, 225, 285, 328, 378
SfaNI	GCATC	1 cut(s)	170
Sse9I	AATT	3 cut(s)	243, 420, 453
SspMI	CTAG	3 cut(s)	75, 134, 152
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	247, 308, 405
TasI	AATT	3 cut(s)	243, 420, 453
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	337
TscAI	CASTG	2 cut(s)	85, 486
TseI	GCWGC	4 cut(s)	101, 274, 283, 365
TspRI	CASTG	2 cut(s)	85, 486
Van91I	CCANNNNNTGG	1 cut(s)	119
XapI	RAATTY	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	3 cut(s)	75, 134, 152
ZrmI	AGTACT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.