Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Reverse (-)

47028230 .. 47031266

Gene Structure 3037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCCTTCTCTACTTCTTGCCTCTTCCTCTCTCCAATCTCAGCTCTCAAGATTGACTATGCTAAGAAGACTATAAGGCGTTGGAAGAATGATGGAAGGGAACAAAGGTTCAGTTTTTCACTTCGAGGTAATAATACTGCACTTTTAGGTCAACAGATTGTGACGGCAGGAGCTCATCTACACAAGGACTGGAGTTTTGTTGGTGGTTCAAGAGTTACTGTAACACCAAAACTTGAGATAGCCAGTCTGCATCCAAAAAGCCCCGGAGTCTATGCATCATGGTTGGCAAGTTCTCAAATAGCTAGCACTGCTTTTACTTTGGGAACAGCAGCAGTAGTCCCATTTTATGGCCTCATGGTTCTTGCACCAAAAGCTGAACTAACAAAAGCATCTATTGAAAGCAGTATACCGTATATAGTGCTTGGACTTCTCTATGCTTATCTACTATACCTCTCTTGGACTCCAGAAACAATTCGATTGATTTTTGCAAGTCAATACTGGCTGCCTGAGCTGCCTGGGATTGCAAAGATGTTCTCGAATGAGATGACATTAGCTTCTGCGTGGATTCACTTGTTGGTTGTTGATCTCTTCGCAGCAAGGCAGGTTTATTATGATGGATTGGAAAACAAAATCGAGACACGACATTCAATTTCCCTTTGTCTGTTTTTCTGCCCCATTGGAATTCTTACTCATGTCATTACCAAAGCACTGACTAAAAGTGCTGGAAAGTCCAGCACACACAAAACCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

251

Amino Acids

27.64

Weight (kDa)

9.56

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA4-like	PF14108	103 - 231	7.1e-35	ABA DEFICIENT 4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	592
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	681
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	210, 398, 648
AjnI	CCWGG	1 cut(s)	514
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	6 cut(s)	44, 173, 302, 374, 511, 554
AluI	AGCT	6 cut(s)	44, 173, 302, 374, 511, 554
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	629
AoxI	GGCC	2 cut(s)	3, 349
ApeKI	GCWGC	4 cut(s)	329, 502, 511, 593
ApoI	RAATTY	1 cut(s)	681
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
Asp700I	GAANNNNTTC	1 cut(s)	471
AsuC2I	CCSGG	1 cut(s)	264
AsuNHI	GCTAGC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	4 cut(s)	341, 489, 498, 605
BccI	CCATC	2 cut(s)	86, 608
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	592
BisI	GCNGC	4 cut(s)	330, 503, 512, 594
BlsI	GCNGC	4 cut(s)	331, 504, 513, 595
Bme1390I	CCNGG	2 cut(s)	264, 516
BmrFI	CCNGG	2 cut(s)	264, 516
BmsI	GCATC	3 cut(s)	259, 284, 398
BmtI	GCTAGC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	2 cut(s)	211, 447
Bpu10I	CCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	32, 254
BpuMI	CCSGG	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	262, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	3 cut(s)	194, 243, 503
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	262, 515
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	2 cut(s)	54, 498
BseNI	ACTGG	3 cut(s)	194, 243, 503
BseXI	GCAGC	4 cut(s)	341, 489, 498, 605
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	5, 351
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	5, 351
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	583
BspANI	GGCC	2 cut(s)	5, 351
BspCNI	CTCAG	2 cut(s)	53, 499
BspMI	ACCTGC	1 cut(s)	592
BspOI	GCTAGC	1 cut(s)	306
BsrI	ACTGG	3 cut(s)	194, 243, 503
BssECI	CCNNGG	2 cut(s)	262, 515
BssMI	GATC	1 cut(s)	583
BssNAI	GTATAC	1 cut(s)	407
Bst1107I	GTATAC	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	2 cut(s)	220, 411
Bst6I	CTCTTC	2 cut(s)	29, 593
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	3 cut(s)	40, 63, 507
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	586
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	1 cut(s)	583
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 371, 508, 511
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	2 cut(s)	262, 514
BstV1I	GCAGC	4 cut(s)	341, 489, 498, 605
BstV2I	GAAGAC	1 cut(s)	74
BstZ17I	GTATAC	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	5, 351
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 707
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	1 cut(s)	304
CviAII	CATG	3 cut(s)	279, 355, 692
DdeI	CTNAG	3 cut(s)	40, 63, 507
DpnI	GATC	1 cut(s)	585
DpnII	GATC	1 cut(s)	583
Eam1104I	CTCTTC	2 cut(s)	29, 593
EarI	CTCTTC	2 cut(s)	29, 593
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	681
EcoRII	CCWGG	1 cut(s)	514
EcoT22I	ATGCAT	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	3 cut(s)	282, 358, 695
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	3 cut(s)	278, 354, 691
FblI	GTMKAC	1 cut(s)	406
Fnu4HI	GCNGC	4 cut(s)	330, 503, 512, 594
FokI	GGATG	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	4 cut(s)	330, 503, 512, 594
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	4 cut(s)	330, 503, 512, 594
GsuI	CTGGAG	2 cut(s)	211, 447
HaeIII	GGCC	2 cut(s)	5, 351
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	3 cut(s)	282, 358, 695
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HinfI	GANTC	3 cut(s)	267, 460, 565
HpaII	CCGG	1 cut(s)	264
Hpy166II	GTNNAC	2 cut(s)	152, 407
Hpy188III	TCNNGA	5 cut(s)	49, 210, 464, 535, 634
Hpy8I	GTNNAC	2 cut(s)	152, 407
HpyAV	CCTTC	2 cut(s)	16, 90
HpyCH4III	ACNGT	2 cut(s)	220, 411
HpyCH4V	TGCA	6 cut(s)	140, 250, 275, 365, 488, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 371, 508, 511
HpyF3I	CTNAG	3 cut(s)	40, 63, 507
Hsp92II	CATG	3 cut(s)	282, 358, 695
Kzo9I	GATC	1 cut(s)	583
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	4 cut(s)	341, 489, 498, 605
LweI	GCATC	3 cut(s)	259, 284, 398
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	160, 214, 220
MalI	GATC	1 cut(s)	585
MboI	GATC	1 cut(s)	583
MboII	GAAGA	4 cut(s)	16, 79, 97, 580
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	3 cut(s)	471, 648, 681
MlyI	GAGTC	2 cut(s)	276, 454
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	5 cut(s)	32, 38, 119, 362, 461
Mph1103I	ATGCAT	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	471
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	264, 516
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	4 cut(s)	308, 371, 508, 511
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	1 cut(s)	583
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	3 cut(s)	282, 358, 695
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	565
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	4 cut(s)	331, 504, 513, 595
PleI	GAGTC	2 cut(s)	275, 454
PpsI	GAGTC	2 cut(s)	275, 454
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
SacI	GAGCTC	1 cut(s)	175
SatI	GCNGC	4 cut(s)	330, 503, 512, 594
Sau3AI	GATC	1 cut(s)	583
SchI	GAGTC	2 cut(s)	276, 454
ScrFI	CCNGG	2 cut(s)	264, 516
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	3 cut(s)	259, 284, 398
SmlI	CTYRAG	2 cut(s)	47, 233
SmoI	CTYRAG	2 cut(s)	47, 233
Sse9I	AATT	3 cut(s)	471, 648, 681
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	262, 514
TaaI	ACNGT	2 cut(s)	220, 411
TaqI	TCGA	4 cut(s)	124, 475, 536, 633
TasI	AATT	3 cut(s)	471, 648, 681
TfiI	GAWTC	1 cut(s)	565
TscAI	CASTG	2 cut(s)	313, 714
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	4 cut(s)	329, 502, 511, 593
Tsp45I	GTSAC	1 cut(s)	160
TspRI	CASTG	2 cut(s)	313, 714
Van91I	CCANNNNNTGG	1 cut(s)	347
XapI	RAATTY	1 cut(s)	681
XmiI	GTMKAC	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	303
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.