Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Forward (+)

17330751 .. 17332990

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGCAGCCGTTATTACTTGTTTACAGGGTTTCTGGTCTCACAACAGAGATGGCCTTCTCTTCTTGCTTTTGCCATACTTCATTCTCCTTCAAGGTTGACTATGGCAAGAAGACTACAAGACATTGGAGCAACGAGAGAAGTGCACAAAGCTTCACATTTACGCCGAGAGGTTATAACACTGAAGTCTTAGGTCAACAACTTGTGACAGTGGAATCTCACATGCACAAGGACTGGAGTTTTGTAGGAGGTTCAACAGTTACTATAAGACCAAAACTTGAGAGATCTATTCCACATCGAAAATGCTCTGGAGTATACATGTCATGGTTGGCAAGTTCTCAAATTGCTAGTAGAGTTTTTACTTTGGCAACGACTGCAGTTCTCCCATTTTATGCCCTCATGGTTCTGGCACCTAAAGCTCAACTGACGAAAGTATTTACAGAGAGTAGTATACCATATGTTCTGCTTGGAGTTCTTTATGCCTATCTACTATACCTCTCTTGGACTCCTGAAACGCTGCGGTTGATTTTTGGAAGTAAATACTGGCTGCCTGAGCTGACTGGTATAGCAAAGATGTTCACCAATGAGATAACATTAGCTTCTGCCTGGATTCACTTGTTGGTTGTTGATCTCTTTGCTGCAAGGCAGGTTTTCAGCGATGGTCTGCAAAACCAAATAGAGACTCGACATTCAGTTTCTCTTTGCCTGTTTTTCTGCCCCATTGGAATACTGACTCATGTCGTTACCAAAGCACTTACAAAAAGTGGTGGAAGCTTAAGCAGTCACAGTATACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

266

Amino Acids

29.76

Weight (kDa)

9.3

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	409
AccI	GTMKAC	3 cut(s)	315, 451, 790
AciI	CCGC	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	204
AflII	CTTAAG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	94, 255
AjnI	CCWGG	1 cut(s)	605
AluBI	AGCT	5 cut(s)	153, 419, 556, 599, 774
AluI	AGCT	5 cut(s)	153, 419, 556, 599, 774
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	44, 674
Alw44I	GTGCAC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	54
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	4 cut(s)	7, 517, 547, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AsuHPI	GGTGA	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	4 cut(s)	19, 504, 534, 625
BccI	CCATC	2 cut(s)	46, 653
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	607
BcoDI	GTCTC	2 cut(s)	44, 674
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	375
BfrI	CTTAAG	1 cut(s)	775
BfuAI	ACCTGC	1 cut(s)	637
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	4 cut(s)	8, 518, 548, 639
BlsI	GCNGC	4 cut(s)	9, 519, 549, 640
Bme1390I	CCNGG	1 cut(s)	607
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	607
BoxI	GACNNNNGTC	1 cut(s)	737
BpiI	GAAGAC	1 cut(s)	119
BpmI	CTGGAG	2 cut(s)	256, 330
Bpu10I	CCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	44
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	3 cut(s)	239, 548, 565
BseBI	CCWGG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	3 cut(s)	239, 548, 565
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	19, 504, 534, 625
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	44, 674
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	284, 628
BspACI	CCGC	1 cut(s)	520
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	409
BspTI	CTTAAG	1 cut(s)	775
BspTNI	GGTCTC	1 cut(s)	44
BsrI	ACTGG	3 cut(s)	239, 548, 565
BssMI	GATC	2 cut(s)	284, 628
BssNAI	GTATAC	3 cut(s)	316, 452, 791
Bst1107I	GTATAC	3 cut(s)	316, 452, 791
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	3 cut(s)	211, 259, 788
Bst6I	CTCTTC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	775
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	190, 552
BstKTI	GATC	2 cut(s)	287, 631
BstMAI	GTCTC	2 cut(s)	44, 674
BstMBI	GATC	2 cut(s)	284, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 416, 553
BstNI	CCWGG	1 cut(s)	607
BstNSI	RCATGY	2 cut(s)	226, 322
BstPAI	GACNNNNGTC	1 cut(s)	737
BstSCI	CCNGG	1 cut(s)	605
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	4 cut(s)	19, 504, 534, 625
BstV2I	GAAGAC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BstZ17I	GTATAC	3 cut(s)	316, 452, 791
BsuRI	GGCC	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	672
BtsIMutI	CAGTG	2 cut(s)	180, 216
BveI	ACCTGC	1 cut(s)	637
CviAII	CATG	5 cut(s)	223, 319, 324, 400, 737
CviJI	RGCY	8 cut(s)	10, 56, 153, 419, 547, 556, 599, 774
CviKI_1	RGCY	8 cut(s)	10, 56, 153, 419, 547, 556, 599, 774
DdeI	CTNAG	2 cut(s)	190, 552
DpnI	GATC	2 cut(s)	286, 630
DpnII	GATC	2 cut(s)	284, 628
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	605
FaeI	CATG	5 cut(s)	226, 322, 327, 403, 740
FatI	CATG	5 cut(s)	222, 318, 323, 399, 736
FauNDI	CATATG	1 cut(s)	457
FblI	GTMKAC	3 cut(s)	315, 451, 790
Fnu4HI	GCNGC	4 cut(s)	8, 518, 548, 639
Fsp4HI	GCNGC	4 cut(s)	8, 518, 548, 639
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	4 cut(s)	8, 518, 548, 639
GsuI	CTGGAG	2 cut(s)	256, 330
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	226, 322, 327, 403, 740
HincII	GTYRAC	2 cut(s)	100, 197
HindII	GTYRAC	2 cut(s)	100, 197
HindIII	AAGCTT	2 cut(s)	151, 772
HinfI	GANTC	5 cut(s)	215, 505, 610, 682, 733
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	8 cut(s)	25, 100, 146, 197, 316, 452, 579, 791
Hpy188III	TCNNGA	2 cut(s)	309, 509
Hpy8I	GTNNAC	8 cut(s)	25, 100, 146, 197, 316, 452, 579, 791
HpyAV	CCTTC	2 cut(s)	67, 100
HpyCH4III	ACNGT	3 cut(s)	211, 259, 788
HpyCH4V	TGCA	5 cut(s)	146, 226, 377, 641, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 416, 553
HpyF3I	CTNAG	2 cut(s)	190, 552
Hsp92II	CATG	5 cut(s)	226, 322, 327, 403, 740
Kzo9I	GATC	2 cut(s)	284, 628
LmnI	GCTCC	2 cut(s)	4, 129
Lsp1109I	GCAGC	4 cut(s)	19, 504, 534, 625
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	4 cut(s)	205, 259, 742, 782
MalI	GATC	2 cut(s)	286, 630
MboI	GATC	2 cut(s)	284, 628
MboII	GAAGA	2 cut(s)	54, 124
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	499, 676, 727
MnlI	CCTC	4 cut(s)	164, 242, 407, 506
MseI	TTAA	1 cut(s)	776
MspCI	CTTAAG	1 cut(s)	775
MspR9I	CCNGG	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	607
MwoI	GCNNNNNNNGC	3 cut(s)	374, 416, 553
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	2 cut(s)	284, 628
NlaIII	CATG	5 cut(s)	226, 322, 327, 403, 740
NlaIV	GGNNCC	1 cut(s)	411
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	205, 782
NspI	RCATGY	2 cut(s)	226, 322
PciI	ACATGT	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	215, 610
PkrI	GCNGC	4 cut(s)	9, 519, 549, 640
PleI	GAGTC	3 cut(s)	499, 676, 727
PpsI	GAGTC	3 cut(s)	499, 676, 727
PscI	ACATGT	1 cut(s)	318
PshAI	GACNNNNGTC	1 cut(s)	737
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	776
SatI	GCNGC	4 cut(s)	8, 518, 548, 639
Sau3AI	GATC	2 cut(s)	284, 628
SchI	GAGTC	3 cut(s)	499, 676, 727
ScrFI	CCNGG	1 cut(s)	607
SduI	GDGCHC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	278, 775
SmoI	CTYRAG	2 cut(s)	278, 775
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	1 cut(s)	520
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	605
TaaI	ACNGT	3 cut(s)	211, 259, 788
TaqI	TCGA	2 cut(s)	298, 685
TasI	AATT	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	215, 610
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TscAI	CASTG	2 cut(s)	187, 216
TseFI	GTSAC	2 cut(s)	205, 782
TseI	GCWGC	4 cut(s)	7, 517, 547, 638
Tsp45I	GTSAC	2 cut(s)	205, 782
TspDTI	ATGAA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	187, 216
Vha464I	CTTAAG	1 cut(s)	775
VneI	GTGCAC	1 cut(s)	144
XceI	RCATGY	2 cut(s)	226, 322
XmiI	GTMKAC	3 cut(s)	315, 451, 790
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.