Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Reverse (-)

4384395 .. 4387041

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04750.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTATGACATGAACCACCACTGTTGCTATTGCCGCCTTTCCTTTTGTAGTTGCTTCTCTCTCTCTCCCAAGTTTGCTGTCCGTCCTGCGCTTCTCTCAGTGGAAACCAACCCATACTTTCCTCTACCTCCATTATTCAACTCAGCTTCCCACGTTCCGTTTTCCTTTCTTTTGTTTTCTTTTCCTAATAAAACCCAAGGAAATGCATCTGCCATTATTGTTGTCTTCCTGGGTTGTCTGCTCTCGCAACAAAACGAGCACATGGCCCTCTCTTCTTGCTTTTTCCTCTCTCCACTCTCTTCCATTTCCAAGATTGACTACGCTAAGAAGAGTGTAGGACCTCGGAGTATTGATGGAAGGAAACAAAGGTTCCCTTTTCTGCTCAGAAGTAGTAACACTGAACTCTTTGGTCATCAGCTTGTGACTGCGGGAGCTCACTTACACATGAACTGGAGTTTTGTCGGAGGTTCGAGAGTTACTGTGAGACCAAAGCATGAGAGATTCGTTCCACTTCGAAAAGTCTCTGGCGTATATGCTTCATGGTTGGCAAGTTCTCAAATTGCTAGCACTGCTTTTACTTTCGGAACAACCGCAGTTCTCCCATTCTATGCCCTCATGGTTCTGGCACCTAAAGCTGAACTAACGAAAATTTCCATGGAAAGTAGTATACCGTATATTGTGCTGGGAGTTCTCTATGCTTATCTGCTATACCTCTCTTGGACTCCCGAAACGCTACAGTTGATTTTTGCAAGTAAATACTGGCTTCCTGAGCTGCCTGGTATAGGAAGGATGTTCTCGAACGAGATGACATTAGCTTCTGCTTGGATTCACTTATTGGTTGTTGATCTCTTTGCTGCAAGGCAGGTTTTTCGCGATGGACTGGACAATGAAATTGAGACGCGACATTCAGTTTCTCTTTGCCTCTTTTGCTGTCCTGTTGGAATCGCTACTCATGCTATTACGAAAGCACTGACTAAAAGTGCTGGAAGTTCCAGCAGACGTAATATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

338

Amino Acids

37.53

Weight (kDa)

9.33

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	853
AccB1I	GGYRCC	1 cut(s)	625
AccI	GTMKAC	1 cut(s)	667
AccII	CGCG	2 cut(s)	873, 901
AciI	CCGC	3 cut(s)	34, 428, 591
AcsI	RAATTY	1 cut(s)	648
AfiI	CCNNNNNNNGG	1 cut(s)	782
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	228, 775
AluBI	AGCT	6 cut(s)	146, 418, 434, 635, 772, 815
AluI	AGCT	6 cut(s)	146, 418, 434, 635, 772, 815
Alw21I	GWGCWC	2 cut(s)	261, 436
Alw26I	GTCTC	3 cut(s)	478, 526, 890
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	772, 854
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	265, 338
AsuII	TTCGAA	1 cut(s)	514
AsuNHI	GCTAGC	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	261, 436
BbvI	GCAGC	2 cut(s)	759, 841
BccI	CCATC	2 cut(s)	347, 869
BcgI	CGANNNNNNTGC	2 cut(s)	851, 885
BciT130I	CCWGG	2 cut(s)	230, 777
BcoDI	GTCTC	3 cut(s)	478, 526, 890
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	853
BisI	GCNGC	3 cut(s)	34, 773, 855
BlsI	GCNGC	3 cut(s)	35, 774, 856
Bme1390I	CCNGG	2 cut(s)	230, 777
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	265, 338
BmiI	GGNNCC	2 cut(s)	371, 627
BmrFI	CCNGG	2 cut(s)	230, 777
BmsI	GCATC	1 cut(s)	215
BmtI	GCTAGC	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu14I	TTCGAA	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	4 cut(s)	196, 229, 341, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse1I	ACTGG	3 cut(s)	455, 764, 885
BseBI	CCWGG	2 cut(s)	230, 777
BseDI	CCNNGG	4 cut(s)	196, 229, 341, 654
BseGI	GGATG	1 cut(s)	795
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMII	CTCAG	4 cut(s)	111, 156, 397, 759
BseNI	ACTGG	3 cut(s)	455, 764, 885
BseXI	GCAGC	2 cut(s)	759, 841
BseYI	CCCAGC	1 cut(s)	682
Bsh1236I	CGCG	2 cut(s)	873, 901
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	625
BsiHKAI	GWGCWC	2 cut(s)	261, 436
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	3 cut(s)	478, 526, 890
BsmBI	CGTCTC	1 cut(s)	890
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	478
Bsp119I	TTCGAA	1 cut(s)	514
Bsp1286I	GDGCHC	2 cut(s)	261, 436
Bsp143I	GATC	1 cut(s)	844
Bsp19I	CCATGG	1 cut(s)	654
Bsp68I	TCGCGA	1 cut(s)	873
BspACI	CCGC	3 cut(s)	34, 428, 591
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	4 cut(s)	110, 155, 396, 760
BspFNI	CGCG	2 cut(s)	873, 901
BspLI	GGNNCC	2 cut(s)	371, 627
BspMI	ACCTGC	1 cut(s)	853
BspOI	GCTAGC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	625
BspTNI	GGTCTC	1 cut(s)	478
BsrI	ACTGG	3 cut(s)	455, 764, 885
BssECI	CCNNGG	4 cut(s)	196, 229, 341, 654
BssMI	GATC	1 cut(s)	844
BssNAI	GTATAC	1 cut(s)	668
BssT1I	CCWWGG	2 cut(s)	196, 654
Bst1107I	GTATAC	1 cut(s)	668
Bst2UI	CCWGG	2 cut(s)	230, 777
Bst4CI	ACNGT	4 cut(s)	23, 481, 672, 738
Bst6I	CTCTTC	3 cut(s)	277, 304, 323
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	5 cut(s)	97, 142, 324, 383, 768
BstDSI	CCRYGG	1 cut(s)	654
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	1 cut(s)	795
BstFNI	CGCG	2 cut(s)	873, 901
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	847
BstMAI	GTCTC	3 cut(s)	478, 526, 890
BstMBI	GATC	1 cut(s)	844
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 569, 632, 769, 927, 953
BstNI	CCWGG	2 cut(s)	230, 777
BstSCI	CCNGG	2 cut(s)	228, 775
BstSFI	CTRYAG	1 cut(s)	734
BstUI	CGCG	2 cut(s)	873, 901
BstV1I	GCAGC	2 cut(s)	759, 841
BstV2I	GAAGAC	1 cut(s)	217
BstZ17I	GTATAC	1 cut(s)	668
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	654
BtgZI	GCGATG	1 cut(s)	888
BtsCI	GGATG	1 cut(s)	795
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	5 cut(s)	19, 105, 396, 567, 968
BtuMI	TCGCGA	1 cut(s)	873
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	1 cut(s)	565
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	265, 338
CseI	GACGC	1 cut(s)	907
CspCI	CAANNNNNGTGG	2 cut(s)	5, 40
CviAII	CATG	8 cut(s)	10, 262, 445, 494, 540, 616, 655, 953
CviJI	RGCY	8 cut(s)	146, 266, 418, 434, 635, 763, 772, 815
CviKI_1	RGCY	8 cut(s)	146, 266, 418, 434, 635, 763, 772, 815
DdeI	CTNAG	5 cut(s)	97, 142, 324, 383, 768
DpnI	GATC	1 cut(s)	846
DpnII	GATC	1 cut(s)	844
Eam1104I	CTCTTC	3 cut(s)	277, 304, 323
EarI	CTCTTC	3 cut(s)	277, 304, 323
Ecl136II	GAGCTC	1 cut(s)	434
Eco130I	CCWWGG	2 cut(s)	196, 654
Eco24I	GRGCYC	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	434
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	228, 775
EcoT14I	CCWWGG	2 cut(s)	196, 654
EcoT22I	ATGCAT	2 cut(s)	208, 1011
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	2 cut(s)	196, 654
Esp3I	CGTCTC	1 cut(s)	890
FaeI	CATG	8 cut(s)	13, 265, 448, 497, 543, 619, 658, 956
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FatI	CATG	8 cut(s)	9, 261, 444, 493, 539, 615, 654, 952
FauI	CCCGC	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	667
Fnu4HI	GCNGC	3 cut(s)	34, 773, 855
FokI	GGATG	1 cut(s)	802
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	3 cut(s)	34, 773, 855
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	34, 773, 855
GsaI	CCCAGC	1 cut(s)	686
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	266
HgaI	GACGC	1 cut(s)	907
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	8 cut(s)	13, 265, 448, 497, 543, 619, 658, 956
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	4 cut(s)	501, 721, 826, 942
Hpy166II	GTNNAC	1 cut(s)	668
Hpy188I	TCNGA	4 cut(s)	345, 386, 464, 584
Hpy188III	TCNNGA	5 cut(s)	471, 725, 767, 796, 872
Hpy8I	GTNNAC	1 cut(s)	668
HpyAV	CCTTC	2 cut(s)	351, 780
HpyCH4III	ACNGT	4 cut(s)	23, 481, 672, 738
HpyCH4IV	ACGT	2 cut(s)	153, 1000
HpyCH4V	TGCA	4 cut(s)	206, 749, 857, 1009
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 569, 632, 769, 927, 953
HpyF3I	CTNAG	5 cut(s)	97, 142, 324, 383, 768
HpySE526I	ACGT	2 cut(s)	153, 1000
Hsp92II	CATG	8 cut(s)	13, 265, 448, 497, 543, 619, 658, 956
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	844
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	2 cut(s)	759, 841
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	2 cut(s)	153, 1000
MaeIII	GTNAC	3 cut(s)	392, 421, 475
MalI	GATC	1 cut(s)	846
MboI	GATC	1 cut(s)	844
MboII	GAAGA	4 cut(s)	217, 264, 291, 340
MhlI	GDGCHC	2 cut(s)	261, 436
MluCI	AATT	3 cut(s)	558, 648, 891
MlyI	GAGTC	1 cut(s)	715
MmeI	TCCRAC	2 cut(s)	442, 919
MnlI	CCTC	9 cut(s)	132, 138, 278, 296, 351, 458, 623, 722, 932
Mph1103I	ATGCAT	2 cut(s)	208, 1011
MspR9I	CCNGG	2 cut(s)	230, 777
MvaI	CCWGG	2 cut(s)	230, 777
MvnI	CGCG	2 cut(s)	873, 901
MwoI	GCNNNNNNNGC	6 cut(s)	33, 569, 632, 769, 927, 953
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	1 cut(s)	844
NheI	GCTAGC	1 cut(s)	563
NlaIII	CATG	8 cut(s)	13, 265, 448, 497, 543, 619, 658, 956
NlaIV	GGNNCC	2 cut(s)	371, 627
NmuCI	GTSAC	1 cut(s)	421
NruI	TCGCGA	1 cut(s)	873
NsiI	ATGCAT	2 cut(s)	208, 1011
NspV	TTCGAA	1 cut(s)	514
PfeI	GAWTC	3 cut(s)	501, 826, 942
PkrI	GCNGC	3 cut(s)	35, 774, 856
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	228, 775
PspFI	CCCAGC	1 cut(s)	682
PspGI	CCWGG	2 cut(s)	228, 775
PspN4I	GGNNCC	2 cut(s)	371, 627
PspPI	GGNCC	2 cut(s)	265, 338
PspPPI	RGGWCCY	1 cut(s)	338
RruI	TCGCGA	1 cut(s)	873
SacI	GAGCTC	1 cut(s)	436
SatI	GCNGC	3 cut(s)	34, 773, 855
Sau3AI	GATC	1 cut(s)	844
Sau96I	GGNCC	2 cut(s)	265, 338
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	2 cut(s)	230, 777
SduI	GDGCHC	2 cut(s)	261, 436
SfaNI	GCATC	1 cut(s)	215
SfcI	CTRYAG	1 cut(s)	734
SfuI	TTCGAA	1 cut(s)	514
SinI	GGWCC	1 cut(s)	338
Sse9I	AATT	3 cut(s)	558, 648, 891
SsiI	CCGC	3 cut(s)	34, 428, 591
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	228, 775
StyI	CCWWGG	2 cut(s)	196, 654
TaaI	ACNGT	4 cut(s)	23, 481, 672, 738
TaiI	ACGT	2 cut(s)	156, 1003
TaqI	TCGA	3 cut(s)	470, 514, 797
TasI	AATT	3 cut(s)	558, 648, 891
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	3 cut(s)	501, 826, 942
TscAI	CASTG	5 cut(s)	26, 105, 403, 574, 975
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	772, 854
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	4 cut(s)	26, 461, 528, 903
TspGWI	ACGGA	2 cut(s)	71, 147
TspRI	CASTG	5 cut(s)	26, 105, 403, 574, 975
VpaK11BI	GGWCC	1 cut(s)	338
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	1 cut(s)	648
XmiI	GTMKAC	1 cut(s)	667
XspI	CTAG	1 cut(s)	564
Zsp2I	ATGCAT	2 cut(s)	208, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.