Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Reverse (-)

4800205 .. 4802783

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03870.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCCCTCTCTTCTTCCTTTTCCCTCCCTTCCATTTCCAAGATTGACCACGCTAAGAAGACGTTAAGAACTTGGAGTAATGATGGAAGCAAACAAAGGTTCGATTTTCCACTCACAAGTAGCAAAACTGAACTGTTTGGTCATCAGCTTGTGACAGTAGGAGCTCACTTACACAAGAGCTGGAGTTTTTTGGGAGGTTTGAGAGTTACTATGAGACCAAGGCATGAGAGTATCGTTCCACTTCGAAAAATCTCTCGAGTATATGCGTCATGGTTGGCAAGTTCCCAAATGGCTAGCACTGCTTTTACTTTCGGAACAACCTCAGTTCTCCCATTCTATGCCCTCATGGTTCTGGCACCTAAAGCTGAACTAACGAAAATTTCCATGGAAAGTAGCATACCGTATATCGTGCTGGGAGTTCTCTATGCCTATCTACTGTACCTCTCTTGGACTCCTGAAACGCTACAGTTGATTTTTGCAAGTAAATACTGGCTTCCTGAGCTGCCGGGTATTGGAAGGATGTTCTCGAATGAGATGACATTAGCTTCTGCTTGGATTCACTTGTTGGTTGTGGATCTCTTTGCTGCAAGGCAGGTTTTTCGTGATGGACTGGACAACGAAATTGAGACGCGACATTCAGTTTCTCTTTGCCTCTTTTTCTGTCCCGTTGGAATCGTTACTCATGTCATTACCAAAGCACTGACTAAAAATGCTGGAAGTTCCGGCACACGTAATATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

248

Amino Acids

27.6

Weight (kDa)

9.69

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	583
AccB1I	GGYRCC	1 cut(s)	355
AccII	CGCG	1 cut(s)	631
AclWI	GGATC	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	378
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	512
AflIII	ACRYGT	1 cut(s)	728
AluBI	AGCT	6 cut(s)	148, 164, 180, 365, 502, 545
AluI	AGCT	6 cut(s)	148, 164, 180, 365, 502, 545
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	208, 620
AlwI	GGATC	1 cut(s)	582
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	502, 584
ApoI	RAATTY	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	507
AsuII	TTCGAA	1 cut(s)	244
AsuNHI	GCTAGC	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	489, 571
BccI	CCATC	2 cut(s)	77, 599
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	208, 620
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	583
BisI	GCNGC	2 cut(s)	503, 585
BlsI	GCNGC	2 cut(s)	504, 586
Bme1390I	CCNGG	1 cut(s)	507
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	507
BmtI	GCTAGC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	507
BsaAI	YACGTR	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	218, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	2 cut(s)	494, 615
BseDI	CCNNGG	2 cut(s)	218, 384
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMII	CTCAG	2 cut(s)	336, 489
BseNI	ACTGG	2 cut(s)	494, 615
BseXI	GCAGC	2 cut(s)	489, 571
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	631
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	506, 723
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	2 cut(s)	208, 620
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	648
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	255
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	574
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	335, 490
BspFNI	CGCG	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	583
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	494, 615
BssECI	CCNNGG	2 cut(s)	218, 384
BssMI	GATC	1 cut(s)	574
BssT1I	CCWWGG	2 cut(s)	218, 384
Bst4CI	ACNGT	5 cut(s)	135, 157, 402, 438, 468
Bst6I	CTCTTC	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	731
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	54, 322, 498
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	1 cut(s)	631
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	2 cut(s)	208, 620
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 362, 499
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	464
BstUI	CGCG	1 cut(s)	631
BstV1I	GCAGC	2 cut(s)	489, 571
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	297, 698
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	255, 637
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	5 cut(s)	224, 270, 346, 385, 683
CviJI	RGCY	9 cut(s)	5, 148, 164, 180, 293, 365, 493, 502, 545
CviKI_1	RGCY	9 cut(s)	5, 148, 164, 180, 293, 365, 493, 502, 545
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	54, 322, 498
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	218, 384
Eco24I	GRGCYC	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	218, 384
EcoT22I	ATGCAT	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	2 cut(s)	218, 384
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	5 cut(s)	227, 273, 349, 388, 686
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	5 cut(s)	223, 269, 345, 384, 682
Fnu4HI	GCNGC	2 cut(s)	503, 585
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	503, 585
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	503, 585
GsaI	CCCAGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	506, 723
HgaI	GACGC	2 cut(s)	255, 637
Hin1II	CATG	5 cut(s)	227, 273, 349, 388, 686
HinfI	GANTC	3 cut(s)	451, 556, 672
HpaII	CCGG	2 cut(s)	506, 723
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	5 cut(s)	255, 455, 497, 526, 602
HpyAV	CCTTC	2 cut(s)	39, 510
HpyCH4III	ACNGT	5 cut(s)	135, 157, 402, 438, 468
HpyCH4IV	ACGT	2 cut(s)	62, 730
HpyCH4V	TGCA	3 cut(s)	479, 587, 739
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 362, 499
HpyF3I	CTNAG	3 cut(s)	54, 322, 498
HpySE526I	ACGT	2 cut(s)	62, 730
Hsp92II	CATG	5 cut(s)	227, 273, 349, 388, 686
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	2 cut(s)	489, 571
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	62, 730
MaeIII	GTNAC	3 cut(s)	151, 205, 676
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	3 cut(s)	3, 6, 70
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	378, 621
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	7 cut(s)	17, 35, 188, 331, 353, 452, 662
Mph1103I	ATGCAT	1 cut(s)	741
MseI	TTAA	1 cut(s)	65
MspI	CCGG	2 cut(s)	506, 723
MspR9I	CCNGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	631
MwoI	GCNNNNNNNGC	3 cut(s)	299, 362, 499
NciI	CCSGG	1 cut(s)	507
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	1 cut(s)	574
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	5 cut(s)	227, 273, 349, 388, 686
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	741
NspV	TTCGAA	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	556, 672
PkrI	GCNGC	2 cut(s)	504, 586
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Ppu21I	YACGTR	1 cut(s)	731
Psp124BI	GAGCTC	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	2 cut(s)	503, 585
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	464
Sfr274I	CTCGAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	2 cut(s)	378, 621
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	2 cut(s)	218, 384
TaaI	ACNGT	5 cut(s)	135, 157, 402, 438, 468
TaiI	ACGT	2 cut(s)	65, 733
TaqI	TCGA	4 cut(s)	102, 244, 256, 527
TasI	AATT	2 cut(s)	378, 621
TfiI	GAWTC	2 cut(s)	556, 672
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	304, 705
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	502, 584
Tsp45I	GTSAC	1 cut(s)	151
TspRI	CASTG	2 cut(s)	304, 705
XapI	RAATTY	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	255
XspI	CTAG	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.