Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Reverse (-)

28654080 .. 28657007

Gene Structure 2928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1132400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCCTCCATTATTCAACTCGACCTCCCACGTTCCGTGTTCCTTTCTTTTGTTTTCTTTTCCTAATAAAACCCAAGGAAATGCATCTGCCATTATTGTTGTCTTCCTGCGTTGTCTGGTCTCGCGACAAAACGAGCACATGGCCCTCTCTTCTTGCTTTTCCCTCTCTCCACTCTCTTCCATTTCCAAGATTGACTACGCTAAGAAGAGTGTAGGACCTCGGAGTATTGATGGAAGGAAACAAGGGTTCCCTTTTCTGCTCAGAAGTAGTAACACTGAACTCTTTGGTCATCAGCTTGTGACTGTGGGAGCTCACTTACACATGAACTGGAGTTTTGTCGGAGGTTCGAGAGTTACTGTGAGACCAAAGCATGAGAGACTCGTTCCGCATCGAAAACTCTCTGGAGTATATGCGTCATGGTTGGCAAGTTCTCAAATTGCTAGCACTGCTTTTACTTTCGGAACAACCGCAGTTCTCCCATTCTATGCCCTCATGGTTCTGGCACCTAAAGCTGAACTAACGAAAATTTCCATGGAAAGTGGTATACCGTATATTGTGCTGGGAATTCTCTATGCTTATCTGCTATACCTCTCTTGGACTCCCGAAACGCTACAGTTGATTTTTGCAAGTAAATACTGGCTTCCTGAGCTGCCTGGTATGGGAAGGATGTTCTCGAACGAGATGACATTAGCTTCTGCTTGGATTCACTTATTGGTTGTTGATCTCTTTGCTGCAAGGCAAGTTTTTCGCGATGGACTGGACAATGAAATTGAGACGCGACATTCAGTTTCTCTTTGCCTCTTTTTCTGTCCTGTTGGAATCGCTACTCATGTTATTACCAAAGCACTGACTAAAAGTGCTGGAAGTTCCAGCAGACGTAACATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

297

Amino Acids

32.83

Weight (kDa)

9.71

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA4-like	PF14108	149 - 277	2.8e-33	ABA DEFICIENT 4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	544
AccII	CGCG	3 cut(s)	124, 750, 778
AciI	CCGC	2 cut(s)	386, 468
AcsI	RAATTY	2 cut(s)	525, 564
AfiI	CCNNNNNNNGG	1 cut(s)	659
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	5 cut(s)	295, 311, 512, 649, 692
AluI	AGCT	5 cut(s)	295, 311, 512, 649, 692
Alw21I	GWGCWC	2 cut(s)	138, 313
Alw26I	GTCTC	4 cut(s)	124, 355, 370, 767
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	649, 731
ApoI	RAATTY	2 cut(s)	525, 564
AspS9I	GGNCC	2 cut(s)	142, 215
AsuNHI	GCTAGC	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	138, 313
BbvI	GCAGC	2 cut(s)	636, 718
BccI	CCATC	2 cut(s)	224, 746
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	1 cut(s)	654
BcoDI	GTCTC	4 cut(s)	124, 355, 370, 767
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	611
BisI	GCNGC	2 cut(s)	650, 732
BlsI	GCNGC	2 cut(s)	651, 733
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	142, 215
BmiI	GGNNCC	2 cut(s)	248, 504
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	92, 397
BmtI	GCTAGC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	2 cut(s)	349, 423
Bpu10I	CCTNAGC	1 cut(s)	645
BsaI	GGTCTC	2 cut(s)	124, 355
BsaJI	CCNNGG	3 cut(s)	73, 218, 531
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	3 cut(s)	332, 641, 762
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	73, 218, 531
BseGI	GGATG	1 cut(s)	672
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMII	CTCAG	2 cut(s)	274, 636
BseNI	ACTGG	3 cut(s)	332, 641, 762
BseXI	GCAGC	2 cut(s)	636, 718
BseYI	CCCAGC	1 cut(s)	559
Bsh1236I	CGCG	3 cut(s)	124, 750, 778
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	502
BsiHKAI	GWGCWC	2 cut(s)	138, 313
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	4 cut(s)	124, 355, 370, 767
BsmBI	CGTCTC	1 cut(s)	767
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	2 cut(s)	124, 355
Bsp1286I	GDGCHC	2 cut(s)	138, 313
Bsp143I	GATC	1 cut(s)	721
Bsp19I	CCATGG	1 cut(s)	531
Bsp68I	TCGCGA	2 cut(s)	124, 750
BspACI	CCGC	2 cut(s)	386, 468
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	273, 637
BspFNI	CGCG	3 cut(s)	124, 750, 778
BspLI	GGNNCC	2 cut(s)	248, 504
BspOI	GCTAGC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	502
BspTNI	GGTCTC	2 cut(s)	124, 355
BsrI	ACTGG	3 cut(s)	332, 641, 762
BssECI	CCNNGG	3 cut(s)	73, 218, 531
BssMI	GATC	1 cut(s)	721
BssNAI	GTATAC	1 cut(s)	545
BssT1I	CCWWGG	2 cut(s)	73, 531
Bst1107I	GTATAC	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	4 cut(s)	304, 358, 549, 615
Bst6I	CTCTTC	3 cut(s)	154, 181, 200
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	3 cut(s)	201, 260, 645
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	672
BstFNI	CGCG	3 cut(s)	124, 750, 778
BstKTI	GATC	1 cut(s)	724
BstMAI	GTCTC	4 cut(s)	124, 355, 370, 767
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 509, 646
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	1 cut(s)	886
BstSCI	CCNGG	1 cut(s)	652
BstSFI	CTRYAG	1 cut(s)	611
BstUI	CGCG	3 cut(s)	124, 750, 778
BstV1I	GCAGC	2 cut(s)	636, 718
BstV2I	GAAGAC	1 cut(s)	94
BstZ17I	GTATAC	1 cut(s)	545
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	531
BtgZI	GCGATG	1 cut(s)	765
BtsCI	GGATG	1 cut(s)	672
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	273, 444, 845
BtuMI	TCGCGA	2 cut(s)	124, 750
Cac8I	GCNNGC	1 cut(s)	442
Cfr13I	GGNCC	2 cut(s)	142, 215
CseI	GACGC	2 cut(s)	402, 784
CviAII	CATG	8 cut(s)	139, 322, 371, 417, 493, 532, 830, 883
CviJI	RGCY	7 cut(s)	143, 295, 311, 512, 640, 649, 692
CviKI_1	RGCY	7 cut(s)	143, 295, 311, 512, 640, 649, 692
DdeI	CTNAG	3 cut(s)	201, 260, 645
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
Eam1104I	CTCTTC	3 cut(s)	154, 181, 200
EarI	CTCTTC	3 cut(s)	154, 181, 200
Ecl136II	GAGCTC	1 cut(s)	311
Eco130I	CCWWGG	2 cut(s)	73, 531
Eco24I	GRGCYC	1 cut(s)	313
Eco31I	GGTCTC	2 cut(s)	124, 355
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	564
EcoRII	CCWGG	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	73, 531
EcoT22I	ATGCAT	2 cut(s)	85, 888
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	2 cut(s)	73, 531
Esp3I	CGTCTC	1 cut(s)	767
FaeI	CATG	8 cut(s)	142, 325, 374, 420, 496, 535, 833, 886
FatI	CATG	8 cut(s)	138, 321, 370, 416, 492, 531, 829, 882
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	650, 732
FokI	GGATG	1 cut(s)	679
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	650, 732
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	2 cut(s)	650, 732
GsaI	CCCAGC	1 cut(s)	563
GsuI	CTGGAG	2 cut(s)	349, 423
HaeIII	GGCC	1 cut(s)	143
HgaI	GACGC	2 cut(s)	402, 784
Hin1II	CATG	8 cut(s)	142, 325, 374, 420, 496, 535, 833, 886
HinfI	GANTC	4 cut(s)	378, 598, 703, 819
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	4 cut(s)	222, 263, 341, 461
Hpy188III	TCNNGA	7 cut(s)	123, 348, 402, 602, 644, 673, 749
Hpy8I	GTNNAC	1 cut(s)	545
HpyAV	CCTTC	2 cut(s)	228, 657
HpyCH4III	ACNGT	4 cut(s)	304, 358, 549, 615
HpyCH4IV	ACGT	2 cut(s)	30, 877
HpyCH4V	TGCA	4 cut(s)	83, 626, 734, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 509, 646
HpyF3I	CTNAG	3 cut(s)	201, 260, 645
HpySE526I	ACGT	2 cut(s)	30, 877
Hsp92II	CATG	8 cut(s)	142, 325, 374, 420, 496, 535, 833, 886
Kzo9I	GATC	1 cut(s)	721
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	2 cut(s)	636, 718
LweI	GCATC	2 cut(s)	92, 397
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	30, 877
MaeIII	GTNAC	4 cut(s)	269, 298, 352, 878
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MboII	GAAGA	4 cut(s)	94, 141, 168, 217
MhlI	GDGCHC	2 cut(s)	138, 313
MluCI	AATT	4 cut(s)	435, 525, 564, 768
MlyI	GAGTC	2 cut(s)	372, 592
MmeI	TCCRAC	2 cut(s)	319, 796
MnlI	CCTC	9 cut(s)	15, 34, 155, 173, 228, 335, 500, 599, 809
Mph1103I	ATGCAT	2 cut(s)	85, 888
MspR9I	CCNGG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	654
MvnI	CGCG	3 cut(s)	124, 750, 778
MwoI	GCNNNNNNNGC	3 cut(s)	446, 509, 646
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	1 cut(s)	721
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	8 cut(s)	142, 325, 374, 420, 496, 535, 833, 886
NlaIV	GGNNCC	2 cut(s)	248, 504
NmuCI	GTSAC	1 cut(s)	298
NruI	TCGCGA	2 cut(s)	124, 750
NsiI	ATGCAT	2 cut(s)	85, 888
NspI	RCATGY	1 cut(s)	886
PfeI	GAWTC	2 cut(s)	703, 819
PkrI	GCNGC	2 cut(s)	651, 733
PleI	GAGTC	2 cut(s)	372, 592
PpsI	GAGTC	2 cut(s)	372, 592
PpuMI	RGGWCCY	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	652
PspFI	CCCAGC	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	248, 504
PspPI	GGNCC	2 cut(s)	142, 215
PspPPI	RGGWCCY	1 cut(s)	215
RruI	TCGCGA	2 cut(s)	124, 750
SacI	GAGCTC	1 cut(s)	313
SatI	GCNGC	2 cut(s)	650, 732
Sau3AI	GATC	1 cut(s)	721
Sau96I	GGNCC	2 cut(s)	142, 215
SchI	GAGTC	2 cut(s)	372, 592
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	2 cut(s)	138, 313
SfaNI	GCATC	2 cut(s)	92, 397
SfcI	CTRYAG	1 cut(s)	611
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	4 cut(s)	435, 525, 564, 768
SsiI	CCGC	2 cut(s)	386, 468
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	2 cut(s)	73, 531
TaaI	ACNGT	4 cut(s)	304, 358, 549, 615
TaiI	ACGT	2 cut(s)	33, 880
TaqI	TCGA	4 cut(s)	20, 347, 391, 674
TasI	AATT	4 cut(s)	435, 525, 564, 768
TfiI	GAWTC	2 cut(s)	703, 819
TscAI	CASTG	3 cut(s)	280, 451, 852
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	649, 731
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	338, 780
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	3 cut(s)	280, 451, 852
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	525, 564
XceI	RCATGY	1 cut(s)	886
XmiI	GTMKAC	1 cut(s)	544
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	2 cut(s)	85, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.