Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Forward (+)

21904456 .. 21907652

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCTTCTCTACTTCTTGCCTCTTCCTCTCTCCATTCTCAGCTCTCAAGATTGACTATGCTAAGAAGACTATAAGGCGTTGGAAGAATGATGGAAGGGAACAAAGGTTCAGTTTTTCACTTCGAAGTAATAATACTGCACTTTTAGGTCAACAGATTGTGACGGCAGGAAGTTACTGTAATAATACTGCACTTTTAGGTCAACAGATTGTGACGGCAGGAGCTCATCTACACAAGGACTGGAGTTTTGTTGGTGGTTCAAGAGTTACTGTAACACCAAAACTTGAGATAGCCAGTCTGCATCCAAAAAGCCCCGGAGTATATGCATCATGGTTGGCAAGTTCTCAAATAGCTAGCACTGCTTTTACTTTGGGAACAGCAGCAGTACTCCCATTTTATGGCCTCATGGTTCTTGCTCCTAAAGCTGAACTAACAAAAGCATCTATTGAAAGCAGTATACCGTATATAGTGCTTGGACTTCTCTATGCTTATCTACTATACCTCTCTTGGACTCCAGAAACAATTCGATTGATTTTTGCAAGTCAATACTGGCTGCCTGAGCTGCCTGGGATTGCAAAGATGTTCTCGAATGAGATGACATTAGCTTCTGCGTGGATTCACTTGTTGGTTGTTGATCTCTTTGCAGCAAGGCAGGTTTATCACGATGGACTGGAAAATCAAATCGAGACGCGACATTCAATTTCCCTTTGTCTGTTTTTCTGCCCGTTGGAATTCTTACTCATGTCATTACCAAAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

253

Amino Acids

28.13

Weight (kDa)

9.02

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA4-like	PF14108	120 - 246	3.4e-33	ABA DEFICIENT 4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	457
AccII	CGCG	1 cut(s)	691
AcsI	RAATTY	1 cut(s)	731
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	3 cut(s)	261, 449, 699
AjnI	CCWGG	1 cut(s)	565
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	6 cut(s)	44, 224, 353, 425, 562, 605
AluI	AGCT	6 cut(s)	44, 224, 353, 425, 562, 605
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	680
AoxI	GGCC	2 cut(s)	3, 400
ApeKI	GCWGC	4 cut(s)	380, 553, 562, 644
ApoI	RAATTY	1 cut(s)	731
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
Asp700I	GAANNNNTTC	1 cut(s)	522
AsuC2I	CCSGG	1 cut(s)	315
AsuII	TTCGAA	1 cut(s)	124
AsuNHI	GCTAGC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	226
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	4 cut(s)	392, 540, 549, 656
BccI	CCATC	2 cut(s)	86, 659
BceAI	ACGGC	2 cut(s)	180, 231
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	680
BfaI	CTAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	4 cut(s)	381, 554, 563, 645
BlsI	GCNGC	4 cut(s)	382, 555, 564, 646
BmcAI	AGTACT	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	315, 567
BmrFI	CCNGG	2 cut(s)	315, 567
BmsI	GCATC	3 cut(s)	310, 335, 449
BmtI	GCTAGC	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	2 cut(s)	262, 498
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	124
BpuEI	CTTGAG	2 cut(s)	32, 305
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	313, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse1I	ACTGG	4 cut(s)	245, 294, 554, 675
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	313, 566
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	54, 549
BseNI	ACTGG	4 cut(s)	245, 294, 554, 675
BseXI	GCAGC	4 cut(s)	392, 540, 549, 656
BsgI	GTGCAG	2 cut(s)	123, 174
Bsh1236I	CGCG	1 cut(s)	691
BshFI	GGCC	2 cut(s)	5, 402
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	680
BsmBI	CGTCTC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	5, 402
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	634
BspANI	GGCC	2 cut(s)	5, 402
BspCNI	CTCAG	2 cut(s)	53, 550
BspFNI	CGCG	1 cut(s)	691
BspMI	ACCTGC	1 cut(s)	643
BspOI	GCTAGC	1 cut(s)	357
BspT104I	TTCGAA	1 cut(s)	124
BsrI	ACTGG	4 cut(s)	245, 294, 554, 675
BssECI	CCNNGG	2 cut(s)	313, 566
BssMI	GATC	1 cut(s)	634
BssNAI	GTATAC	1 cut(s)	458
Bst1107I	GTATAC	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	179, 271, 462
Bst6I	CTCTTC	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	3 cut(s)	40, 63, 558
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	691
BstKTI	GATC	1 cut(s)	637
BstMAI	GTCTC	1 cut(s)	680
BstMBI	GATC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	4 cut(s)	359, 422, 559, 562
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	2 cut(s)	313, 565
BstUI	CGCG	1 cut(s)	691
BstV1I	GCAGC	4 cut(s)	392, 540, 549, 656
BstV2I	GAAGAC	1 cut(s)	74
BstZ17I	GTATAC	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	5, 402
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	357, 757
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	355
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	3 cut(s)	330, 406, 742
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	3 cut(s)	40, 63, 558
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	680
FaeI	CATG	3 cut(s)	333, 409, 745
FatI	CATG	3 cut(s)	329, 405, 741
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	381, 554, 563, 645
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	4 cut(s)	381, 554, 563, 645
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	4 cut(s)	381, 554, 563, 645
GsuI	CTGGAG	2 cut(s)	262, 498
HaeIII	GGCC	2 cut(s)	5, 402
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	697
Hin1II	CATG	3 cut(s)	333, 409, 745
HincII	GTYRAC	2 cut(s)	152, 203
HindII	GTYRAC	2 cut(s)	152, 203
HinfI	GANTC	2 cut(s)	511, 616
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	3 cut(s)	152, 203, 458
Hpy188III	TCNNGA	6 cut(s)	49, 261, 515, 586, 662, 685
Hpy8I	GTNNAC	3 cut(s)	152, 203, 458
HpyAV	CCTTC	2 cut(s)	16, 90
HpyCH4III	ACNGT	3 cut(s)	179, 271, 462
HpyCH4V	TGCA	7 cut(s)	140, 191, 301, 326, 539, 575, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	359, 422, 559, 562
HpyF3I	CTNAG	3 cut(s)	40, 63, 558
Hsp92II	CATG	3 cut(s)	333, 409, 745
Kzo9I	GATC	1 cut(s)	634
LmnI	GCTCC	2 cut(s)	221, 421
Lsp1109I	GCAGC	4 cut(s)	392, 540, 549, 656
LweI	GCATC	3 cut(s)	310, 335, 449
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	5 cut(s)	160, 173, 211, 265, 271
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	3 cut(s)	16, 79, 97
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	3 cut(s)	522, 699, 731
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	2 cut(s)	62, 708
MnlI	CCTC	4 cut(s)	32, 38, 413, 512
Mph1103I	ATGCAT	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	522
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	315, 567
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	691
MwoI	GCNNNNNNNGC	4 cut(s)	359, 422, 559, 562
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	1 cut(s)	634
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	333, 409, 745
NmuCI	GTSAC	2 cut(s)	160, 211
NsiI	ATGCAT	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	616
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	4 cut(s)	382, 555, 564, 646
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	226
SatI	GCNGC	4 cut(s)	381, 554, 563, 645
Sau3AI	GATC	1 cut(s)	634
ScaI	AGTACT	1 cut(s)	387
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	2 cut(s)	315, 567
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	3 cut(s)	310, 335, 449
SfuI	TTCGAA	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	47, 284
SmoI	CTYRAG	2 cut(s)	47, 284
Sse9I	AATT	3 cut(s)	522, 699, 731
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	313, 565
TaaI	ACNGT	3 cut(s)	179, 271, 462
TaqI	TCGA	4 cut(s)	124, 526, 587, 684
TasI	AATT	3 cut(s)	522, 699, 731
TatI	WGTACW	1 cut(s)	385
TfiI	GAWTC	1 cut(s)	616
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	2 cut(s)	160, 211
TseI	GCWGC	4 cut(s)	380, 553, 562, 644
Tsp45I	GTSAC	2 cut(s)	160, 211
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	731
XmiI	GTMKAC	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.