Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Reverse (-)

11817068 .. 11822381

Gene Structure 5314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTCAAATTTGTTTTCCATTTGTGGAGTGCTCCCCTCACTGATGTTCAGCTATTGTGGGTGAACATGATTATGGACACACTGGGAGCACTTGCACTTGCAATTGGGCCTCCAAATAATGACTTAATGAAGTGTCCGCCAGTTGGAGAGAGGCAAAATTACATCAGTAATGCAATGTGGAGGAATATTTTAGAGCAGTCTTTCTATCAATTTACAATAATATGGCTTCTTAAGGCAATAGGACAAGCAATATTTCATCCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

88

Amino Acids

10.13

Weight (kDa)

6.01

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	11 - 85	1.4e-19	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflII	CTTAAG	1 cut(s)	230
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	2 cut(s)	34, 91
AoxI	GGCC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	34, 91
BfrI	CTTAAG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	87, 140
Bse3DI	GCAATG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	87, 140
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	34, 91
BslI	CCNNNNNNNGG	1 cut(s)	143
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	34, 91
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	109
BspTI	CTTAAG	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	87, 140
BstAFI	CTTAAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	39, 80
Cfr13I	GGNCC	1 cut(s)	107
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	3 cut(s)	52, 109, 226
CviKI_1	RGCY	3 cut(s)	52, 109, 226
EciI	GGCGGA	1 cut(s)	126
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	68, 74, 223
FatI	CATG	1 cut(s)	66
FokI	GGATG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	1 cut(s)	70
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	95, 101, 173
Hsp92II	CATG	1 cut(s)	70
LmnI	GCTCC	2 cut(s)	37, 86
LpnPI	CCDG	2 cut(s)	68, 153
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	34, 91
MluCI	AATT	4 cut(s)	8, 102, 157, 209
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	4 cut(s)	47, 120, 144, 174
MseI	TTAA	2 cut(s)	125, 231
MslI	CAYNNNNRTG	1 cut(s)	71
MspCI	CTTAAG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	102
NlaIII	CATG	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	125, 231
Sau96I	GGNCC	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	34, 91
SetI	ASST	1 cut(s)	54
SgeI	CNNG	6 cut(s)	79, 95, 104, 110, 152, 257
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	4 cut(s)	8, 102, 157, 209
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	2 cut(s)	187, 252
TasI	AATT	4 cut(s)	8, 102, 157, 209
Tru1I	TTAA	2 cut(s)	125, 231
Tru9I	TTAA	2 cut(s)	125, 231
TscAI	CASTG	2 cut(s)	46, 87
TspDTI	ATGAA	2 cut(s)	143, 245
TspRI	CASTG	2 cut(s)	46, 87
Vha464I	CTTAAG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.