Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Reverse (-)

6185299 .. 6186402

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1045600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAAGGGCTGGAGGTAGGCTTAGTTTCAAATATTTCTGATAAAATTGCTAGCACTGCTTTTACTTTCGGAACAACTGCAGTTCTCCCGTTCTATGCCCTCATGGTTCTGGCTCCTAAAGCTGAACGACTGCCTGGTATAGGAAAGATGTTTTCGAATGAGATGGCATTAGCTTCTGCTTGGATTCACTTGTTGGTGGTGGATCTATTTGCTGCACGGCAGCTGTTTTCCGCTCACTTTGCTGTGCAGGTTTTTCTCGATGGACTGGACAACGAAATTGAGACGCGACATTCAGTTTCTCTTTGCCTCTTTTTCTGTCCCGTTGGAATCGTTACTCATAATGCCAAAGCACTGACTAAAAGTGCTGGAAATTCCGGCACACGTAATATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

132

Amino Acids

14.13

Weight (kDa)

6.49

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA4-like	PF14108	42 - 113	2.8e-15	ABA DEFICIENT 4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AccBSI	CCGCTC	1 cut(s)	233
AccII	CGCG	1 cut(s)	286
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	30
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	3 cut(s)	122, 173, 223
AluI	AGCT	3 cut(s)	122, 173, 223
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	212, 220
ApoI	RAATTY	1 cut(s)	370
AsuII	TTCGAA	1 cut(s)	155
AsuNHI	GCTAGC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	199, 232
BccI	CCATC	2 cut(s)	157, 254
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	2 cut(s)	213, 221
BlsI	GCNGC	2 cut(s)	214, 222
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	135
BmtI	GCTAGC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	199, 232
BsgI	GTGCAG	2 cut(s)	198, 266
Bsh1236I	CGCG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	275
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	238
BspOI	GCTAGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	210
BspT104I	TTCGAA	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 119, 239
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	199, 232
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 350
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	52
CseI	GACGC	1 cut(s)	292
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	6 cut(s)	10, 21, 113, 122, 173, 223
CviKI_1	RGCY	6 cut(s)	10, 21, 113, 122, 173, 223
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	1 cut(s)	106
FaiI	YATR	5 cut(s)	96, 104, 140, 339, 389
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	213, 221
Fsp4HI	GCNGC	2 cut(s)	213, 221
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	2 cut(s)	213, 221
GsuI	CTGGAG	1 cut(s)	32
HapII	CCGG	1 cut(s)	375
HgaI	GACGC	1 cut(s)	292
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	2 cut(s)	184, 327
HpaII	CCGG	1 cut(s)	375
Hpy188I	TCNGA	2 cut(s)	40, 71
Hpy188III	TCNNGA	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	80, 215, 247, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 119, 239
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	95, 120, 147, 233, 251, 351, 388
Lsp1109I	GCAGC	2 cut(s)	199, 232
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	204
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	1 cut(s)	202
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	3 cut(s)	45, 276, 370
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	3 cut(s)	7, 110, 317
Mph1103I	ATGCAT	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	56, 119, 239
NdeII	GATC	1 cut(s)	202
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	184, 327
PkrI	GCNGC	2 cut(s)	214, 222
Ppu21I	YACGTR	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	223
SatI	GCNGC	2 cut(s)	213, 221
Sau3AI	GATC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	6 cut(s)	18, 124, 175, 225, 252, 385
SfcI	CTRYAG	1 cut(s)	78
SfuI	TTCGAA	1 cut(s)	155
Sse9I	AATT	3 cut(s)	45, 276, 370
SsiI	CCGC	1 cut(s)	231
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	133
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	155, 258
TasI	AATT	3 cut(s)	45, 276, 370
TfiI	GAWTC	2 cut(s)	184, 327
TscAI	CASTG	2 cut(s)	61, 357
TseI	GCWGC	2 cut(s)	212, 220
TspRI	CASTG	2 cut(s)	61, 357
XagI	CCTNNNNNAGG	1 cut(s)	138
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.