Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Forward (+)

17600943 .. 17603815

Gene Structure 2873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G157500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCTTCTCTTCTTGCTTTTGCCATTCTCAGTTCTCCCTCAAGGTTGACTATGCTAAGAAGACTATAAGACATTCGAGTAACTATAGAAGCATCACATTTTCACTCCGAAGTTCTCATACTCAAGTCTTCGGTCAACAGCTTGAGACAGTGGGAGTTCAGTTACACAGGGACTGGAGTTTTGTAGGAGGTTCAACAGTTACTGTAAGAACAAAACTCGAGAGATCCATTCCACACCGAAAAGGCTCTGGAATATACGTCTCATGGTTGGCAAGTTCTCAAATTGCTAGCAGAGTTTTTACTTTGGGAACAACTGCAGTTCTCCCATTTTATGCCCTCATGGTTCTGGCACCTAAAGCTGAACTGGTATGTTCTCCTACAAAAATGTCTACGGAAAGTAGCATACCATATATTCTGCTCGGAGTTCTCTATGCTTATCTACTATACCTCTCTTGGACTCCTCAGACGCTACGGTTGATTTTTGCAAGTAAATACTGGCTGCCTGAGCTGACTGGTATAGCAAAGATGTTCACAAATGAGATGACATTAGCTTCTGCCTGGATTCATTTGTTGGCTGTCGATCTCTTTGCTGCAAGGCAGGTTTTCTGCGAGGGTCTTCAAAACCAAATTGAGACTCGGCATTCAGTTTCTCTTTGCCTGTTTTTCTGTCCCATTGGAATTCTTACTCATCTCATTACGAAAGCACTTACTAAAAGTGCTGGAAGCGCAAGCGGGCCCAAAACACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

250

Amino Acids

27.73

Weight (kDa)

9.62

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	589
AccB1I	GGYRCC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	1 cut(s)	732
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	678
AgsI	TTSAA	2 cut(s)	195, 620
AjnI	CCWGG	1 cut(s)	557
AluBI	AGCT	4 cut(s)	142, 359, 508, 551
AluI	AGCT	4 cut(s)	142, 359, 508, 551
Alw26I	GTCTC	3 cut(s)	140, 265, 626
AlwI	GGATC	1 cut(s)	219
AlwNI	CAGNNNCTG	2 cut(s)	174, 203
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	3, 734
ApaI	GGGCCC	1 cut(s)	738
ApeKI	GCWGC	2 cut(s)	499, 590
ApoI	RAATTY	1 cut(s)	678
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	1 cut(s)	728
AspS9I	GGNCC	2 cut(s)	734, 735
AsuNHI	GCTAGC	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	738
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	738
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbsI	GAAGAC	3 cut(s)	68, 121, 608
BbvI	GCAGC	2 cut(s)	486, 577
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	1 cut(s)	559
BcoDI	GTCTC	3 cut(s)	140, 265, 626
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	2 cut(s)	85, 315
BfuAI	ACCTGC	1 cut(s)	589
BisI	GCNGC	2 cut(s)	500, 591
BlsI	GCNGC	2 cut(s)	501, 592
Bme1390I	CCNGG	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	734, 735
BmiI	GGNNCC	2 cut(s)	351, 736
BmrFI	CCNGG	1 cut(s)	559
BmsI	GCATC	1 cut(s)	102
BmtI	GCTAGC	1 cut(s)	291
BpiI	GAAGAC	3 cut(s)	68, 121, 608
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	3 cut(s)	26, 108, 164
Bse1I	ACTGG	4 cut(s)	179, 369, 500, 517
BseBI	CCWGG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	44, 476, 495
BseNI	ACTGG	4 cut(s)	179, 369, 500, 517
BseRI	GAGGAG	1 cut(s)	450
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	2 cut(s)	486, 577
BshFI	GGCC	2 cut(s)	5, 736
BshNI	GGYRCC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	185, 654
BsmAI	GTCTC	3 cut(s)	140, 265, 626
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	185, 654
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	2 cut(s)	5, 736
BsoBI	CYCGRG	1 cut(s)	218
Bsp120I	GGGCCC	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp143I	GATC	2 cut(s)	224, 580
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	2 cut(s)	5, 736
BspCNI	CTCAG	3 cut(s)	43, 475, 496
BspLI	GGNNCC	2 cut(s)	351, 736
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	589
BspOI	GCTAGC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	349
BsrI	ACTGG	4 cut(s)	179, 369, 500, 517
BssMI	GATC	2 cut(s)	224, 580
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	4 cut(s)	151, 199, 205, 474
Bst6I	CTCTTC	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	289, 730, 734
BstDEI	CTNAG	4 cut(s)	30, 57, 462, 504
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	2 cut(s)	227, 583
BstMAI	GTCTC	3 cut(s)	140, 265, 626
BstMBI	GATC	2 cut(s)	224, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 505, 725
BstNI	CCWGG	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	557
BstSFI	CTRYAG	2 cut(s)	85, 315
BstSLI	GKGCMC	1 cut(s)	738
BstV1I	GCAGC	2 cut(s)	486, 577
BstV2I	GAAGAC	3 cut(s)	68, 121, 608
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	5, 736
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	3 cut(s)	289, 730, 734
CaiI	CAGNNNCTG	2 cut(s)	174, 203
CfoI	GCGC	1 cut(s)	728
Cfr13I	GGNCC	2 cut(s)	734, 735
CseI	GACGC	1 cut(s)	475
CviAII	CATG	2 cut(s)	264, 340
CviJI	RGCY	9 cut(s)	5, 142, 246, 359, 499, 508, 551, 575, 736
CviKI_1	RGCY	9 cut(s)	5, 142, 246, 359, 499, 508, 551, 575, 736
DdeI	CTNAG	4 cut(s)	30, 57, 462, 504
DpnI	GATC	2 cut(s)	226, 582
DpnII	GATC	2 cut(s)	224, 580
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	678
EcoRII	CCWGG	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	738
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	2 cut(s)	267, 343
FaqI	GGGAC	2 cut(s)	185, 654
FatI	CATG	2 cut(s)	263, 339
FauI	CCCGC	1 cut(s)	725
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	2 cut(s)	500, 591
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	2 cut(s)	500, 591
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	727
GluI	GCNGC	2 cut(s)	500, 591
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	5, 736
HgaI	GACGC	1 cut(s)	475
HhaI	GCGC	1 cut(s)	728
Hin1II	CATG	2 cut(s)	267, 343
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HincII	GTYRAC	2 cut(s)	49, 137
HindII	GTYRAC	2 cut(s)	49, 137
HinfI	GANTC	3 cut(s)	457, 562, 634
Hpy166II	GTNNAC	4 cut(s)	49, 137, 390, 531
Hpy188I	TCNGA	3 cut(s)	110, 422, 465
Hpy188III	TCNNGA	2 cut(s)	220, 249
Hpy8I	GTNNAC	4 cut(s)	49, 137, 390, 531
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	4 cut(s)	151, 199, 205, 474
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	317, 485, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 505, 725
HpyF3I	CTNAG	4 cut(s)	30, 57, 462, 504
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	267, 343
HspAI	GCGC	1 cut(s)	726
Kzo9I	GATC	2 cut(s)	224, 580
Lsp1109I	GCAGC	2 cut(s)	486, 577
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	3 cut(s)	80, 162, 199
MalI	GATC	2 cut(s)	226, 582
MboI	GATC	2 cut(s)	224, 580
MboII	GAAGA	4 cut(s)	3, 73, 121, 608
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	3 cut(s)	282, 627, 678
MlyI	GAGTC	2 cut(s)	451, 628
MnlI	CCTC	6 cut(s)	50, 182, 347, 458, 471, 604
MspR9I	CCNGG	1 cut(s)	559
Mva1269I	GAATGC	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	3 cut(s)	356, 505, 725
NdeII	GATC	2 cut(s)	224, 580
NheI	GCTAGC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	267, 343
NlaIV	GGNNCC	2 cut(s)	351, 736
NmeAIII	GCCGAG	1 cut(s)	616
PaeR7I	CTCGAG	1 cut(s)	218
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	501, 592
PleI	GAGTC	2 cut(s)	451, 628
PpsI	GAGTC	2 cut(s)	451, 628
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	2 cut(s)	351, 736
PspOMI	GGGCCC	1 cut(s)	734
PspPI	GGNCC	2 cut(s)	734, 735
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	2 cut(s)	174, 203
PsuI	RGATCY	1 cut(s)	224
SatI	GCNGC	2 cut(s)	500, 591
Sau3AI	GATC	2 cut(s)	224, 580
Sau96I	GGNCC	2 cut(s)	734, 735
SchI	GAGTC	2 cut(s)	451, 628
ScrFI	CCNGG	1 cut(s)	559
SduI	GDGCHC	1 cut(s)	738
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	2 cut(s)	85, 315
Sfr274I	CTCGAG	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	4 cut(s)	41, 123, 143, 218
SmoI	CTYRAG	4 cut(s)	41, 123, 143, 218
Sse9I	AATT	3 cut(s)	282, 627, 678
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	557
TaaI	ACNGT	4 cut(s)	151, 199, 205, 474
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	3 cut(s)	77, 219, 579
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	3 cut(s)	282, 627, 678
TfiI	GAWTC	1 cut(s)	562
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	2 cut(s)	499, 590
TspDTI	ATGAA	1 cut(s)	554
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	678
XhoI	CTCGAG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.