Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Forward (+)

32410945 .. 32413979

Gene Structure 3035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1253000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCTTCTCTTCTTGCTTTTGCCATTCTCCATTGTCCTTCAAGGTTGACTATGGCAAGAAGACTATAAGACATTGGAGCAACGATACAAGTGCACAAAGCTTCACATTTACGCTGAGAGGTTATAACACCGAAGTCTTAGGTCAACAAGTTGTGACAGTGGAATCTCACATGCACAAGGACTGGAGTTTTGTCGGAGGTTCAACAGTTCCCATAAGACCGAAACTTGAAAGATACATTCCACGTCGAAAATGCTCTGGAGTATACATGTCATGGTTGGCAAGTTCTCAAATTGCTAGTAGAGTTTTTACCTTGGGAACGACTGCAGTTCTCCCATTTTATGCCCTCATGGTTCTGGCACCTAAAGCTCAACTGACGAAAGTATTTACAGAGAGTAGTATACCATATGTTCTGCTTGGAGTTCTCTATGCCTATCTACTATACCTCTCTTGGACTCCTGAAACGCTGCAGTTGATCTTTGGAAGTAAATACTGGCTGCCTGAGCTGACTGGTATAGCAAAGATGTTCACCAATGAGATAACATTAGCTTCTGCCTGGATTCACTTGTTGGTTGTTGATCTCTTTGCTGCAAGGCAGGTTTTCAGCGATGGTCTGCAAAACCAAATAGAGACTCGACATTCAGTTTCTCTTTGCCTGTTTTTCTGCCCCATCGGAATACTTACTCATGTCATTACCAAAGCACTTACTAAAAGTGGTGGAAGCTTAAGCGGTCACAGTATACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4281

Protein Analysis

249

Amino Acids

27.77

Weight (kDa)

9.3

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA4-like	PF14108	102 - 229	7.9e-34	ABA DEFICIENT 4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	358
AccI	GTMKAC	3 cut(s)	264, 400, 739
AciI	CCGC	1 cut(s)	729
AflII	CTTAAG	1 cut(s)	724
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	3 cut(s)	43, 204, 230
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	554
AluBI	AGCT	5 cut(s)	102, 368, 505, 548, 723
AluI	AGCT	5 cut(s)	102, 368, 505, 548, 723
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	623
Alw44I	GTGCAC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	466, 496, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AsuHPI	GGTGA	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	453, 483, 574
BccI	CCATC	2 cut(s)	602, 677
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	324, 467
BfrI	CTTAAG	1 cut(s)	724
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	3 cut(s)	467, 497, 588
BlsI	GCNGC	3 cut(s)	468, 498, 589
Bme1390I	CCNGG	1 cut(s)	556
BmgBI	CACGTC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	2 cut(s)	205, 279
Bpu10I	CCTNAGC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	312
Bse1I	ACTGG	3 cut(s)	188, 497, 514
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	107, 492
BseNI	ACTGG	3 cut(s)	188, 497, 514
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	453, 483, 574
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	474, 577
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	108, 493
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	2 cut(s)	328, 471
BspMI	ACCTGC	1 cut(s)	586
BspT107I	GGYRCC	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	724
BsrI	ACTGG	3 cut(s)	188, 497, 514
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	2 cut(s)	474, 577
BssNAI	GTATAC	3 cut(s)	265, 401, 740
BssT1I	CCWWGG	1 cut(s)	312
Bst1107I	GTATAC	3 cut(s)	265, 401, 740
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	3 cut(s)	160, 208, 737
Bst6I	CTCTTC	1 cut(s)	16
BstAFI	CTTAAG	1 cut(s)	724
BstDEI	CTNAG	3 cut(s)	116, 139, 501
BstKTI	GATC	2 cut(s)	477, 580
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	2 cut(s)	474, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 502
BstNI	CCWGG	1 cut(s)	556
BstNSI	RCATGY	2 cut(s)	175, 271
BstSCI	CCNGG	1 cut(s)	554
BstSFI	CTRYAG	2 cut(s)	324, 467
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	453, 483, 574
BstV2I	GAAGAC	1 cut(s)	68
BstZ17I	GTATAC	3 cut(s)	265, 401, 740
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	621
BtrI	CACGTC	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	586
CviAII	CATG	5 cut(s)	172, 268, 273, 349, 686
CviJI	RGCY	7 cut(s)	5, 102, 368, 496, 505, 548, 723
CviKI_1	RGCY	7 cut(s)	5, 102, 368, 496, 505, 548, 723
DdeI	CTNAG	3 cut(s)	116, 139, 501
DpnI	GATC	2 cut(s)	476, 579
DpnII	GATC	2 cut(s)	474, 577
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	5 cut(s)	175, 271, 276, 352, 689
FatI	CATG	5 cut(s)	171, 267, 272, 348, 685
FauNDI	CATATG	1 cut(s)	406
FblI	GTMKAC	3 cut(s)	264, 400, 739
Fnu4HI	GCNGC	3 cut(s)	467, 497, 588
Fsp4HI	GCNGC	3 cut(s)	467, 497, 588
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	3 cut(s)	467, 497, 588
GsuI	CTGGAG	2 cut(s)	205, 279
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	175, 271, 276, 352, 689
HincII	GTYRAC	2 cut(s)	49, 146
HindII	GTYRAC	2 cut(s)	49, 146
HindIII	AAGCTT	2 cut(s)	100, 721
HinfI	GANTC	4 cut(s)	164, 454, 559, 631
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	7 cut(s)	49, 95, 146, 265, 401, 528, 740
Hpy188I	TCNGA	2 cut(s)	197, 674
Hpy188III	TCNNGA	2 cut(s)	258, 458
Hpy8I	GTNNAC	7 cut(s)	49, 95, 146, 265, 401, 528, 740
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	2 cut(s)	16, 49
HpyCH4III	ACNGT	3 cut(s)	160, 208, 737
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	6 cut(s)	95, 175, 326, 469, 590, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 502
HpyF3I	CTNAG	3 cut(s)	116, 139, 501
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	5 cut(s)	175, 271, 276, 352, 689
Kzo9I	GATC	2 cut(s)	474, 577
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	3 cut(s)	453, 483, 574
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	2 cut(s)	154, 731
MalI	GATC	2 cut(s)	476, 579
MboI	GATC	2 cut(s)	474, 577
MboII	GAAGA	2 cut(s)	3, 73
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	448, 625
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	113, 191, 356, 455
MseI	TTAA	1 cut(s)	725
MspCI	CTTAAG	1 cut(s)	724
MspR9I	CCNGG	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	556
MwoI	GCNNNNNNNGC	2 cut(s)	365, 502
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	2 cut(s)	474, 577
NlaIII	CATG	5 cut(s)	175, 271, 276, 352, 689
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	2 cut(s)	154, 731
NspI	RCATGY	2 cut(s)	175, 271
PciI	ACATGT	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	164, 559
PkrI	GCNGC	3 cut(s)	468, 498, 589
PleI	GAGTC	2 cut(s)	448, 625
PpsI	GAGTC	2 cut(s)	448, 625
PscI	ACATGT	1 cut(s)	267
PsiI	TTATAA	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	360
PstI	CTGCAG	2 cut(s)	328, 471
SaqAI	TTAA	1 cut(s)	725
SatI	GCNGC	3 cut(s)	467, 497, 588
Sau3AI	GATC	2 cut(s)	474, 577
SchI	GAGTC	2 cut(s)	448, 625
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	97
SfcI	CTRYAG	2 cut(s)	324, 467
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	1 cut(s)	729
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	160, 208, 737
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	247, 634
TaqII	GACCGA	1 cut(s)	235
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	164, 559
Tru1I	TTAA	1 cut(s)	725
Tru9I	TTAA	1 cut(s)	725
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	154, 731
TseI	GCWGC	3 cut(s)	466, 496, 587
Tsp45I	GTSAC	2 cut(s)	154, 731
TspRI	CASTG	1 cut(s)	165
Vha464I	CTTAAG	1 cut(s)	724
VneI	GTGCAC	1 cut(s)	93
XceI	RCATGY	2 cut(s)	175, 271
XmiI	GTMKAC	3 cut(s)	264, 400, 739
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.