Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006363

Physical Location & Seq

Genomic Coordinates Reverse (-)

45532515 .. 45538070

Gene Structure 5556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00251600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTTCAGAGATTCACAGCTTGGGTGCACCAGAATTGGTTTTCTTGGCCATTGAGATTTTTAAGGCTGGTATTTCCTTTTCAGGGTTGGCAAGTTCTCAAATAGCTAGCACTGCTTTTACTTTGGGAACAGCAGCAGTACTCCCATTTTATAGCCTCATGGTTCTTGCACCTAAAGCTGAACTACTGCCTGGGATTGCAAAGATGTTCTCGAATGAGATGACATTAGCTTCTGCGTGGATTCACTTGTTGGTTGTTGATCTCTTTGCAGCAAGGCAGGTTTATCACGATGGACTGGAAAACAAAATCGAGACGCGACATTCAATTTCCCTTTGGAGTGCTCCCCTCACCGCTGTTCAGCTATTGTGGGTGAACATGATTATGGACACACTGGGAGCACTTGCACTTGCAACTGAGCCTCCAAATAATGACTTAATGAAGTGTCCGCCAGTTGGAAAGAGGCAAAATTTCATCAGTAATGCAATGTGGAGGAATATGTTAGAGCAGTCTTTCTATCAATTTACAGTAATATGGCTTCTTCAGGCAATAGGACAAGCAATATTTCATCTTGACGAACCAGATTCTCATGTTTTTGACAAAATAAGCTGGCGGAAGATGGTGGAAATGGATGTTTTCAAGGGCATATTGGATAATCCAATAATGTTCCAGTTGAAGTCCTCTGTTCCACAGTTCTATTCCAAATCGATATTATTAAAAAGCTGTACAACTCTAGATTGGACAAGCAGATCAGTTGAAGTCTTCGATCCTCAAAGGTACCTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

261

Amino Acids

29.25

Weight (kDa)

5.85

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABA4-like	PF14108	63 - 111	5.8e-13	ABA DEFICIENT 4-like
Cation_ATPase_C	PF00689	114 - 195	2e-22	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67080 AT1G67080
fragaria_vesca	FvH4_5g20670 FvH4_5g20670
malus_domestica	MD00G1132400.v1.1 MD06G1045600.v1.1 MD06G1045700.v1.1 MD09G1253000.v1.1
prunus_persica	Prupe.3G157500_v2.0.a1 Prupe.5G053500_v2.0.a1
pyrus_communis	pycom04g04750 pycom06g03870 pycom09g16910
rosa_chinensis	RchiOBHm_Chr7g0193521 RchiOBHm_Chr7g0206351
rosa_laevigata	RLG00000003319
rosa_multiflora	Rmu_sc0003652.1_g000001 Rmu_sc0005065.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251600
rosa_rugosa	Rorug07G0096300 Rorug07G0096300 Rorug07G0096300
rosa_samantha	Rh7AG228400 Rh7BG224800 Rh7CG243000 Rh7DG235700
rosa_wichuraiana	Rw7G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
Acc65I	GGTACC	1 cut(s)	774
AccB1I	GGYRCC	1 cut(s)	774
AccII	CGCG	1 cut(s)	316
AciI	CCGC	3 cut(s)	351, 446, 610
AclWI	GGATC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	3 cut(s)	141, 724, 776
AfiI	CCNNNNNNNGG	2 cut(s)	84, 452
AgsI	TTSAA	4 cut(s)	324, 637, 673, 755
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	7 cut(s)	21, 107, 179, 230, 361, 606, 720
AluI	AGCT	7 cut(s)	21, 107, 179, 230, 361, 606, 720
Alw21I	GWGCWC	3 cut(s)	31, 343, 400
Alw26I	GTCTC	1 cut(s)	305
Alw44I	GTGCAC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	758
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	134, 269
ApoI	RAATTY	1 cut(s)	466
Asp718I	GGTACC	1 cut(s)	774
AsuHPI	GGTGA	2 cut(s)	340, 382
AsuNHI	GCTAGC	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	774
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
BbsI	GAAGAC	1 cut(s)	751
Bbv12I	GWGCWC	3 cut(s)	31, 343, 400
BbvI	GCAGC	2 cut(s)	146, 281
BccI	CCATC	2 cut(s)	284, 610
BciT130I	CCWGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	108, 731
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	2 cut(s)	135, 270
BlsI	GCNGC	2 cut(s)	136, 271
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	776
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	401
BmtI	GCTAGC	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	751
Bsa29I	ATCGAT	1 cut(s)	704
BsaJI	CCNNGG	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 452
Bse1I	ACTGG	4 cut(s)	300, 396, 449, 667
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	704
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	2 cut(s)	84, 452
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	4 cut(s)	300, 396, 449, 667
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	146, 281
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	774
BshVI	ATCGAT	1 cut(s)	704
BsiHKAI	GWGCWC	3 cut(s)	31, 343, 400
BslI	CCNNNNNNNGG	2 cut(s)	84, 452
BsmAI	GTCTC	1 cut(s)	305
BsmBI	CGTCTC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	31, 343, 400
Bsp1407I	TGTACA	1 cut(s)	722
Bsp143I	GATC	3 cut(s)	259, 746, 763
BspACI	CCGC	3 cut(s)	351, 446, 610
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	406
BspDI	ATCGAT	1 cut(s)	704
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	776
BspMI	ACCTGC	1 cut(s)	268
BspOI	GCTAGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	758
BspT107I	GGYRCC	1 cut(s)	774
BsrDI	GCAATG	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	722
BsrI	ACTGG	4 cut(s)	300, 396, 449, 667
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	3 cut(s)	259, 746, 763
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	526, 690
BstAUI	TGTACA	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	109, 608
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	316
BstKTI	GATC	3 cut(s)	262, 749, 766
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	3 cut(s)	259, 746, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 176
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	146, 281
BstV2I	GAAGAC	1 cut(s)	751
Bsu15I	ATCGAT	1 cut(s)	704
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	704
BtsCI	GGATG	1 cut(s)	634
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 389
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	2 cut(s)	109, 608
ClaI	ATCGAT	1 cut(s)	704
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	3 cut(s)	140, 723, 775
CviAII	CATG	4 cut(s)	160, 376, 587, 783
CviQI	GTAC	3 cut(s)	140, 723, 775
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	3 cut(s)	261, 748, 765
DpnII	GATC	3 cut(s)	259, 746, 763
EaeI	YGGCCR	1 cut(s)	48
EciI	GGCGGA	2 cut(s)	435, 625
Eco57I	CTGAAG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	4 cut(s)	163, 379, 590, 786
FaiI	YATR	9 cut(s)	153, 161, 377, 383, 497, 532, 588, 644, 784
FatI	CATG	4 cut(s)	159, 375, 586, 782
Fnu4HI	GCNGC	2 cut(s)	135, 270
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	2 cut(s)	135, 270
FspBI	CTAG	2 cut(s)	108, 731
GluI	GCNGC	2 cut(s)	135, 270
HaeIII	GGCC	1 cut(s)	50
HgaI	GACGC	1 cut(s)	322
Hin1II	CATG	4 cut(s)	163, 379, 590, 786
HinfI	GANTC	3 cut(s)	13, 241, 581
HphI	GGTGA	2 cut(s)	340, 382
Hpy166II	GTNNAC	2 cut(s)	29, 373
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	5 cut(s)	211, 287, 310, 569, 731
Hpy8I	GTNNAC	2 cut(s)	29, 373
HpyCH4III	ACNGT	2 cut(s)	526, 690
HpyCH4V	TGCA	7 cut(s)	29, 170, 200, 269, 404, 410, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 176
HpyF3I	CTNAG	1 cut(s)	414
Hsp92II	CATG	4 cut(s)	163, 379, 590, 786
KpnI	GGTACC	1 cut(s)	778
Kzo9I	GATC	3 cut(s)	259, 746, 763
LmnI	GCTCC	2 cut(s)	346, 395
Lsp1109I	GCAGC	2 cut(s)	146, 281
MaeI	CTAG	2 cut(s)	108, 731
MalI	GATC	3 cut(s)	261, 748, 765
MboI	GATC	3 cut(s)	259, 746, 763
MboII	GAAGA	3 cut(s)	530, 625, 751
MhlI	GDGCHC	3 cut(s)	31, 343, 400
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	4 cut(s)	35, 324, 466, 518
MluNI	TGGCCA	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	7 cut(s)	167, 356, 429, 453, 483, 688, 777
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	3 cut(s)	63, 434, 713
MslI	CAYNNNNRTG	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	113, 176
NdeII	GATC	3 cut(s)	259, 746, 763
NheI	GCTAGC	1 cut(s)	107
NlaIII	CATG	4 cut(s)	163, 379, 590, 786
NlaIV	GGNNCC	1 cut(s)	776
PfeI	GAWTC	3 cut(s)	13, 241, 581
PkrI	GCNGC	2 cut(s)	136, 271
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	776
RsaI	GTAC	3 cut(s)	141, 724, 776
RsaNI	GTAC	3 cut(s)	140, 723, 775
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	3 cut(s)	63, 434, 713
SatI	GCNGC	2 cut(s)	135, 270
Sau3AI	GATC	3 cut(s)	259, 746, 763
ScaI	AGTACT	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	3 cut(s)	31, 343, 400
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	4 cut(s)	35, 324, 466, 518
SsiI	CCGC	3 cut(s)	351, 446, 610
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	2 cut(s)	108, 731
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	526, 690
TaqI	TCGA	4 cut(s)	212, 309, 704, 762
TasI	AATT	4 cut(s)	35, 324, 466, 518
TatI	WGTACW	2 cut(s)	139, 722
TfiI	GAWTC	3 cut(s)	13, 241, 581
Tru1I	TTAA	3 cut(s)	63, 434, 713
Tru9I	TTAA	3 cut(s)	63, 434, 713
TscAI	CASTG	2 cut(s)	118, 396
TseI	GCWGC	2 cut(s)	134, 269
TspDTI	ATGAA	3 cut(s)	452, 460, 554
TspRI	CASTG	2 cut(s)	118, 396
VneI	GTGCAC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	466
XbaI	TCTAGA	1 cut(s)	730
XspI	CTAG	2 cut(s)	108, 731
ZrmI	AGTACT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.