FvH4_5g22880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013331
Physical Location & Seq
Reverse (-)
14174712 .. 14176031
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22880.t1

Sequence Viewer

Length: 489 bp
ATGCAAAGACAGTCCCTGGGCTCACCGCTCTCCAAGCTCCACCAGGCCCACGGCGGCGACGACTCTCTCGACGACAAGCGCTCCTCCAAGGACATTTTAGCCTTTTCCGCCTCATCCTCCTCTCCAGACTTCGACGACGACAGCAAAGCAACAAAGCCGCACCGACTGTCGTCACCGCCGCCCACCTCTCCGGACAAAGTCATCCACGTCATCCCTATCCTCACCGTCCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACACTCCCTCCCCCTCAGATTTGGCTCAGTTCAATGGCTTCACTCGACTCCCTTCGGCCAAGCGCATAGATTCTGCTGACGACGAAGTCGGCGTCGGCGTCGGCGTCAAACGATTCATCGACATAAGTAAGAGCGATGTTTTGGCGATCCGGAGCCTGAGGGAGGTAGGATCCGAAACCCGGAGACTCGCCCCGAGATCTCGCTCCCACAGAAAAATCGCCGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.72

Weight (kDa)

9.2

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AccBSI CCGCTC 1 cut(s) 28
AccIII TCCGGA 2 cut(s) 190, 408
AciI CCGC 6 cut(s) 26, 54, 108, 158, 176, 179
AclWI GGATC 3 cut(s) 400, 423, 436
AcoI YGGCCR 1 cut(s) 315
AcyI GRCGYC 3 cut(s) 351, 357, 363
AfeI AGCGCT 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 421, 438
AgsI TTSAA 1 cut(s) 292
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 2 cut(s) 15, 42
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 436
AlwI GGATC 3 cut(s) 400, 423, 436
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 451
Aor13HI TCCGGA 2 cut(s) 190, 408
Aor51HI AGCGCT 1 cut(s) 80
AoxI GGCC 2 cut(s) 45, 315
ArsI GACNNNNNNTTYG 2 cut(s) 336, 368
AspLEI GCGC 2 cut(s) 81, 324
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 15, 165, 214
AvaI CYCGRG 1 cut(s) 451
AxyI CCTNAGG 1 cut(s) 416
BamHI GGATCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 17, 44
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 436
BfoI RGCGCY 1 cut(s) 82
BglII AGATCT 1 cut(s) 455
BisI GCNGC 3 cut(s) 55, 158, 179
BlsI GCNGC 3 cut(s) 56, 159, 180
Bme1390I CCNGG 3 cut(s) 17, 44, 439
BmeT110I CYCGRG 1 cut(s) 451
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 413, 430
BmrFI CCNGG 3 cut(s) 17, 44, 439
BoxI GACNNNNGTC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 439
BsaHI GRCGYC 3 cut(s) 351, 357, 363
BsaJI CCNNGG 4 cut(s) 15, 16, 49, 87
BsaWI WCCGGW 2 cut(s) 190, 408
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 438
Bse21I CCTNAGG 1 cut(s) 416
BseAI TCCGGA 2 cut(s) 190, 408
BseBI CCWGG 2 cut(s) 17, 44
BseDI CCNNGG 4 cut(s) 15, 16, 49, 87
BseGI GGATG 4 cut(s) 113, 201, 210, 240
BseLI CCNNNNNNNGG 2 cut(s) 421, 438
BseMII CTCAG 3 cut(s) 288, 299, 407
BseRI GAGGAG 2 cut(s) 73, 109
BshFI GGCC 2 cut(s) 47, 317
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 3 cut(s) 191, 409, 439
BslI CCNNNNNNNGG 2 cut(s) 421, 438
BsmAI GTCTC 1 cut(s) 436
BsnI GGCC 2 cut(s) 47, 317
BsoBI CYCGRG 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 2 cut(s) 190, 408
Bsp143I GATC 3 cut(s) 405, 428, 455
BspACI CCGC 6 cut(s) 26, 54, 108, 158, 176, 179
BspANI GGCC 2 cut(s) 47, 317
BspCNI CTCAG 3 cut(s) 287, 298, 408
BspEI TCCGGA 2 cut(s) 190, 408
BspLI GGNNCC 2 cut(s) 413, 430
BspPI GGATC 3 cut(s) 400, 423, 436
BsrBI CCGCTC 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 15, 16, 49, 87
BssMI GATC 3 cut(s) 405, 428, 455
BssNI GRCGYC 3 cut(s) 351, 357, 363
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 17, 44
Bst4CI ACNGT 3 cut(s) 12, 168, 226
Bst6I CTCTTC 2 cut(s) 251, 257
BstACI GRCGYC 3 cut(s) 351, 357, 363
BstDEI CTNAG 3 cut(s) 274, 285, 416
BstDSI CCRYGG 1 cut(s) 49
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 4 cut(s) 113, 201, 210, 240
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 2 cut(s) 81, 324
BstKTI GATC 3 cut(s) 408, 431, 458
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 3 cut(s) 405, 428, 455
BstMWI GCNNNNNNNGC 2 cut(s) 34, 107
BstNI CCWGG 2 cut(s) 17, 44
BstPAI GACNNNNGTC 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 15, 42, 437
BstX2I RGATCY 2 cut(s) 428, 455
BstYI RGATCY 2 cut(s) 428, 455
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 2 cut(s) 47, 317
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 408
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 4 cut(s) 113, 201, 210, 240
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 2 cut(s) 81, 324
Cfr13I GGNCC 1 cut(s) 46
CseI GACGC 3 cut(s) 340, 346, 352
CviJI RGCY 9 cut(s) 21, 37, 47, 101, 157, 284, 297, 317, 414
CviKI_1 RGCY 9 cut(s) 21, 37, 47, 101, 157, 284, 297, 317, 414
DdeI CTNAG 3 cut(s) 274, 285, 416
DpnI GATC 3 cut(s) 407, 430, 457
DpnII GATC 3 cut(s) 405, 428, 455
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 2 cut(s) 251, 257
EarI CTCTTC 2 cut(s) 251, 257
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 23
Eco47III AGCGCT 1 cut(s) 80
Eco81I CCTNAGG 1 cut(s) 416
Eco88I CYCGRG 1 cut(s) 451
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoRII CCWGG 2 cut(s) 15, 42
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 87
FaiI YATR 2 cut(s) 326, 383
Fnu4HI GCNGC 3 cut(s) 55, 158, 179
FokI GGATG 4 cut(s) 100, 188, 197, 227
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 55, 158, 179
GlaI GCGC 2 cut(s) 80, 323
GluI GCNGC 3 cut(s) 55, 158, 179
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 2 cut(s) 47, 317
HapII CCGG 3 cut(s) 191, 409, 439
HgaI GACGC 3 cut(s) 340, 346, 352
HhaI GCGC 2 cut(s) 81, 324
Hin1I GRCGYC 3 cut(s) 351, 357, 363
Hin6I GCGC 2 cut(s) 79, 322
HinP1I GCGC 2 cut(s) 79, 322
HinfI GANTC 5 cut(s) 62, 306, 329, 372, 444
HpaII CCGG 3 cut(s) 191, 409, 439
HphI GGTGA 3 cut(s) 15, 165, 214
Hpy188I TCNGA 2 cut(s) 277, 433
Hpy188III TCNNGA 4 cut(s) 68, 125, 191, 409
Hpy99I CGWCG 7 cut(s) 62, 74, 137, 140, 344, 356, 362
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 3 cut(s) 12, 168, 226
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 107
HpyF3I CTNAG 3 cut(s) 274, 285, 416
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 3 cut(s) 351, 357, 363
HspAI GCGC 2 cut(s) 79, 322
Kpn2I TCCGGA 2 cut(s) 190, 408
Kzo9I GATC 3 cut(s) 405, 428, 455
LmnI GCTCC 4 cut(s) 42, 86, 411, 467
LpnPI CCDG 9 cut(s) 2, 29, 29, 56, 138, 204, 422, 428, 452
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 171
MalI GATC 3 cut(s) 407, 430, 457
MbiI CCGCTC 1 cut(s) 28
MboI GATC 3 cut(s) 405, 428, 455
MboII GAAGA 2 cut(s) 238, 244
MflI RGATCY 2 cut(s) 428, 455
MhlI GDGCHC 1 cut(s) 23
MlyI GAGTC 3 cut(s) 56, 300, 438
MroI TCCGGA 2 cut(s) 190, 408
MspI CCGG 3 cut(s) 191, 409, 439
MspR9I CCNGG 3 cut(s) 17, 44, 439
MvaI CCWGG 2 cut(s) 17, 44
MwoI GCNNNNNNNGC 2 cut(s) 34, 107
NciI CCSGG 1 cut(s) 439
NdeII GATC 3 cut(s) 405, 428, 455
NlaIV GGNNCC 2 cut(s) 413, 430
NmuCI GTSAC 1 cut(s) 171
PasI CCCWGGG 1 cut(s) 16
PcsI WCGNNNNNNNCGW 5 cut(s) 57, 66, 348, 354, 360
PfeI GAWTC 2 cut(s) 329, 372
PflFI GACNNNGTC 2 cut(s) 197, 344
PkrI GCNGC 3 cut(s) 56, 159, 180
PleI GAGTC 3 cut(s) 56, 300, 438
PpsI GAGTC 3 cut(s) 56, 300, 438
PshAI GACNNNNGTC 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 15, 42
PspGI CCWGG 2 cut(s) 15, 42
PspN4I GGNNCC 2 cut(s) 413, 430
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 428, 455
PsyI GACNNNGTC 2 cut(s) 197, 344
SatI GCNGC 3 cut(s) 55, 158, 179
Sau3AI GATC 3 cut(s) 405, 428, 455
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 3 cut(s) 56, 300, 438
ScrFI CCNGG 3 cut(s) 17, 44, 439
SduI GDGCHC 1 cut(s) 23
SetI ASST 4 cut(s) 39, 188, 210, 426
SsiI CCGC 6 cut(s) 26, 54, 108, 158, 176, 179
StyD4I CCNGG 3 cut(s) 15, 42, 437
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 3 cut(s) 12, 168, 226
TaiI ACGT 1 cut(s) 210
TaqI TCGA 4 cut(s) 69, 132, 304, 378
TauI GCSGC 3 cut(s) 57, 160, 181
TfiI GAWTC 2 cut(s) 329, 372
TseFI GTSAC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 364
Tth111I GACNNNGTC 2 cut(s) 197, 344
XagI CCTNNNNNAGG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.