Prupe.5G029800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013331
Physical Location & Seq
Forward (+)
3469442 .. 3470992
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G029800.1

Sequence Viewer

Length: 510 bp
ATGCAAAGACAATCGCTGGGGGGCTCACCGGGCTCCAAGCTCCACCAGGCCCATGGCGGAGCCAAGGAACAGGCTCTGCTCCTAGACGATGCTCCCAACCGCAGTAACAAGGACCTTTTAGTCTTTTCCACCTCCACCTCCTCTTCAATCTCCGCAGACGACGACCACAAAGCATCAAAGCCTCACCGCCTGTCATCACCGCCCCCCACCGCTCCACACAAATCCATTCACGTCATCCCCGTCCTTACCCTCCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACAGCCCCTCCCAATCAGATTTGGCTCAGTTCAATGGCTTTACGAAACTACCAGGGAAAAAGCGCGCAGACGCCACCGACAACCAAATCGGCAACTTGAGCCGATTTATTGATATCCGGAAGAGCGATGTTTTGGCGATCCGCAGCCTCAGGAACTTGCAGGACACCCAAGGAACCCGAAAACTCCCTCCGAGATCTCGCTCCCACCGGAAAATAGCCGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.54

Weight (kDa)

10.27

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 212
AccII CGCG 1 cut(s) 348
AccIII TCCGGA 1 cut(s) 399
AciI CCGC 7 cut(s) 57, 100, 153, 187, 200, 210, 424
AclWI GGATC 1 cut(s) 415
AcyI GRCGYC 1 cut(s) 354
AgsI TTSAA 2 cut(s) 147, 316
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 45, 334
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 1 cut(s) 415
AlwNI CAGNNNCTG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 399
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 426
AspLEI GCGC 2 cut(s) 348, 350
AspS9I GGNCC 2 cut(s) 49, 112
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 3 cut(s) 18, 176, 189
AvaII GGWCC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 431
BanII GRGCYC 2 cut(s) 26, 35
BbvI GCAGC 1 cut(s) 438
BciT130I CCWGG 2 cut(s) 47, 336
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 83
BglII AGATCT 1 cut(s) 476
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme1390I CCNGG 3 cut(s) 30, 47, 336
Bme18I GGWCC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 49, 112
BmiI GGNNCC 3 cut(s) 34, 61, 457
BmrFI CCNGG 3 cut(s) 30, 47, 336
BmsI GCATC 2 cut(s) 79, 182
BpuEI CTTGAG 1 cut(s) 400
BpuMI CCSGG 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 52, 63, 335, 451
BsaWI WCCGGW 2 cut(s) 399, 489
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse21I CCTNAGG 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 399
BseBI CCWGG 2 cut(s) 47, 336
BseDI CCNNGG 4 cut(s) 52, 63, 335, 451
BseGI GGATG 2 cut(s) 234, 264
BseMII CTCAG 2 cut(s) 323, 445
BsePI GCGCGC 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 130, 242
BseXI GCAGC 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 50
BsiSI CCGG 3 cut(s) 29, 400, 490
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 26, 35
Bsp13I TCCGGA 1 cut(s) 399
Bsp143I GATC 2 cut(s) 420, 476
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 7 cut(s) 57, 100, 153, 187, 200, 210, 424
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 322, 444
BspEI TCCGGA 1 cut(s) 399
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 34, 61, 457
BspPI GGATC 1 cut(s) 415
BspQI GCTCTTC 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 212
BssECI CCNNGG 4 cut(s) 52, 63, 335, 451
BssHII GCGCGC 1 cut(s) 346
BssMI GATC 2 cut(s) 420, 476
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 3 cut(s) 52, 63, 451
Bst2UI CCWGG 2 cut(s) 47, 336
Bst6I CTCTTC 4 cut(s) 148, 275, 281, 398
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 309, 431
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 2 cut(s) 234, 264
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 2 cut(s) 348, 350
BstKTI GATC 2 cut(s) 423, 479
BstMBI GATC 2 cut(s) 420, 476
BstMWI GCNNNNNNNGC 2 cut(s) 30, 381
BstNI CCWGG 2 cut(s) 47, 336
BstSCI CCNGG 3 cut(s) 28, 45, 334
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 476
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 1 cut(s) 476
Bsu36I CCTNAGG 1 cut(s) 431
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 423
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 2 cut(s) 234, 264
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 76
CfoI GCGC 2 cut(s) 348, 350
Cfr13I GGNCC 2 cut(s) 49, 112
CseI GACGC 1 cut(s) 362
CviAII CATG 1 cut(s) 53
DdeI CTNAG 2 cut(s) 309, 431
DpnI GATC 2 cut(s) 422, 478
DpnII GATC 2 cut(s) 420, 476
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 4 cut(s) 148, 275, 281, 398
EarI CTCTTC 4 cut(s) 148, 275, 281, 398
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 3 cut(s) 52, 63, 451
Eco24I GRGCYC 2 cut(s) 26, 35
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 112
Eco81I CCTNAGG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 45, 334
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 3 cut(s) 52, 63, 451
EcoT38I GRGCYC 2 cut(s) 26, 35
ErhI CCWWGG 3 cut(s) 52, 63, 451
FaeI CATG 1 cut(s) 56
FaiI YATR 1 cut(s) 54
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 2 cut(s) 221, 251
FriOI GRGCYC 2 cut(s) 26, 35
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 1 cut(s) 83
GlaI GCGC 2 cut(s) 347, 349
GluI GCNGC 1 cut(s) 427
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 50
HapII CCGG 3 cut(s) 29, 400, 490
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 348, 350
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 2 cut(s) 346, 348
HinP1I GCGC 2 cut(s) 346, 348
HpaII CCGG 3 cut(s) 29, 400, 490
HphI GGTGA 3 cut(s) 18, 176, 189
Hpy188I TCNGA 2 cut(s) 301, 474
Hpy188III TCNNGA 2 cut(s) 400, 433
Hpy99I CGWCG 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 4, 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 381
HpyF3I CTNAG 2 cut(s) 309, 431
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 2 cut(s) 346, 348
Kpn2I TCCGGA 1 cut(s) 399
Kzo9I GATC 2 cut(s) 420, 476
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 7 cut(s) 38, 45, 59, 84, 97, 217, 488
Lsp1109I GCAGC 1 cut(s) 438
LweI GCATC 2 cut(s) 79, 182
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 104
MalI GATC 2 cut(s) 422, 478
MbiI CCGCTC 1 cut(s) 212
MboI GATC 2 cut(s) 420, 476
MboII GAAGA 4 cut(s) 135, 262, 268, 415
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 26, 35
MroI TCCGGA 1 cut(s) 399
MseI TTAA 1 cut(s) 508
MspI CCGG 3 cut(s) 29, 400, 490
MspR9I CCNGG 3 cut(s) 30, 47, 336
MvaI CCWGG 2 cut(s) 47, 336
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 30, 381
NciI CCSGG 1 cut(s) 30
NcoI CCATGG 1 cut(s) 52
NdeII GATC 2 cut(s) 420, 476
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 3 cut(s) 34, 61, 457
PauI GCGCGC 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PkrI GCNGC 1 cut(s) 428
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 45, 334
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 2 cut(s) 45, 334
PspN4I GGNNCC 3 cut(s) 34, 61, 457
PspPI GGNCC 2 cut(s) 49, 112
PspPPI RGGWCCY 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 476
PteI GCGCGC 1 cut(s) 346
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 1 cut(s) 508
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 2 cut(s) 420, 476
Sau96I GGNCC 2 cut(s) 49, 112
ScrFI CCNGG 3 cut(s) 30, 47, 336
SduI GDGCHC 2 cut(s) 26, 35
SetI ASST 5 cut(s) 42, 117, 134, 140, 234
SfaNI GCATC 2 cut(s) 79, 182
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
SsiI CCGC 7 cut(s) 57, 100, 153, 187, 200, 210, 424
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 3 cut(s) 28, 45, 334
StyI CCWWGG 3 cut(s) 52, 63, 451
TaiI ACGT 1 cut(s) 234
Tru1I TTAA 1 cut(s) 508
Tru9I TTAA 1 cut(s) 508
TseI GCWGC 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.