Rh7AG258400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013331
Physical Location & Seq
Reverse (-)
26332745 .. 26333746
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG258400.1

Sequence Viewer

Length: 582 bp
ATGCAAAGGCAGTCCCTGGGCTCACCGGTCTCCAAGCTCCACCAGGCCCACGGCGGCGACGACACTCTGATCCACGACGACAAGCGCTCCAAGGACATTTTAGCCTTTTCCGCCTCCTCCTCCTCTTCTCCAGACTTCGACGACAACAAAGCAACAAAGCCTCACCGACTGTCCTCACCGCCTCCCACCACTCCCGACAAAGTCATCCACGTCATCCCTATCCTCACCGTCCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACACACCCTCCCAGTCAGGTACTACCACTCCCTCTCTCCCTCACTCTTCTCATCTCAATCAACGGCTGTTGCTCTTTTCAGCTAAAATCCTCACCGTCCGGATTTTTTTGCTCTCAGATTTGGCGCAGTTCAATGGATTCACTAGACTATCCGCGCCCAAGCGCGTAGACTCTGTTAACGAAGAAATCGGCGACATCCGGCGATTCATCGACGTCCGCAAAAGCGATGCGTTGGCGATCCGGAGCCTGAGAGACTTTGGATCCGAAACCCGGAAACTCACCCCGAGATCTCGCTCCCACAGAAAAATCGCCGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.52

Weight (kDa)

10.06

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 477
AccI GTMKAC 1 cut(s) 429
AccII CGCG 2 cut(s) 416, 426
AccIII TCCGGA 2 cut(s) 360, 501
AciI CCGC 5 cut(s) 54, 111, 179, 414, 478
AclWI GGATC 4 cut(s) 64, 493, 516, 529
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 1 cut(s) 283
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 531
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 394
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 2 cut(s) 15, 42
AluBI AGCT 2 cut(s) 37, 344
AluI AGCT 2 cut(s) 37, 344
Alw26I GTCTC 2 cut(s) 34, 507
AlwI GGATC 4 cut(s) 64, 493, 516, 529
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 544
Aor13HI TCCGGA 2 cut(s) 360, 501
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 1 cut(s) 45
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 4 cut(s) 87, 388, 418, 426
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 532
AsuHPI GGTGA 6 cut(s) 15, 155, 168, 217, 346, 532
AvaI CYCGRG 1 cut(s) 544
BamHI GGATCC 1 cut(s) 521
BanII GRGCYC 1 cut(s) 23
BceAI ACGGC 2 cut(s) 67, 341
BciT130I CCWGG 2 cut(s) 17, 44
BcnI CCSGG 1 cut(s) 532
BcoDI GTCTC 2 cut(s) 34, 507
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 88
BglII AGATCT 1 cut(s) 548
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 17, 44, 532
BmeT110I CYCGRG 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 506, 523
BmrFI CCNGG 3 cut(s) 17, 44, 532
BmrI ACTGGG 1 cut(s) 268
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 532
BsaHI GRCGYC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 15, 16, 49, 90
BsaWI WCCGGW 3 cut(s) 25, 360, 501
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 254, 274, 284, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 531
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 274
BseAI TCCGGA 2 cut(s) 360, 501
BseBI CCWGG 2 cut(s) 17, 44
BseDI CCNNGG 4 cut(s) 15, 16, 49, 90
BseGI GGATG 4 cut(s) 204, 213, 243, 456
BseLI CCNNNNNNNGG 1 cut(s) 531
BseMII CTCAG 2 cut(s) 390, 500
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 3 cut(s) 106, 109, 112
Bsh1236I CGCG 2 cut(s) 416, 426
BshFI GGCC 1 cut(s) 47
BshTI ACCGGT 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 5 cut(s) 26, 361, 460, 502, 532
BslI CCNNNNNNNGG 1 cut(s) 531
BsmAI GTCTC 2 cut(s) 34, 507
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 2 cut(s) 360, 501
Bsp143I GATC 4 cut(s) 69, 498, 521, 548
BspACI CCGC 5 cut(s) 54, 111, 179, 414, 478
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 389, 501
BspEI TCCGGA 2 cut(s) 360, 501
BspFNI CGCG 2 cut(s) 416, 426
BspLI GGNNCC 2 cut(s) 506, 523
BspPI GGATC 4 cut(s) 64, 493, 516, 529
BspTNI GGTCTC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 15, 16, 49, 90
BssMI GATC 4 cut(s) 69, 498, 521, 548
BssNI GRCGYC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 17, 44
Bst4CI ACNGT 3 cut(s) 171, 229, 358
Bst6I CTCTTC 4 cut(s) 130, 254, 260, 313
BstACI GRCGYC 1 cut(s) 474
BstDEI CTNAG 2 cut(s) 376, 509
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 4 cut(s) 204, 213, 243, 456
BstFNI CGCG 2 cut(s) 416, 426
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 4 cut(s) 87, 388, 418, 426
BstKTI GATC 4 cut(s) 72, 501, 524, 551
BstMAI GTCTC 2 cut(s) 34, 507
BstMBI GATC 4 cut(s) 69, 498, 521, 548
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 17, 44
BstSCI CCNGG 3 cut(s) 15, 42, 530
BstUI CGCG 2 cut(s) 416, 426
BstX2I RGATCY 2 cut(s) 521, 548
BstYI RGATCY 2 cut(s) 521, 548
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 4 cut(s) 204, 213, 243, 456
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 4 cut(s) 87, 388, 418, 426
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 282
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 8 cut(s) 21, 37, 47, 104, 160, 328, 344, 507
CviKI_1 RGCY 8 cut(s) 21, 37, 47, 104, 160, 328, 344, 507
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 2 cut(s) 376, 509
DpnI GATC 4 cut(s) 71, 500, 523, 550
DpnII GATC 4 cut(s) 69, 498, 521, 548
Eam1104I CTCTTC 4 cut(s) 130, 254, 260, 313
EarI CTCTTC 4 cut(s) 130, 254, 260, 313
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 34
Eco47III AGCGCT 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 15, 42
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 4 cut(s) 191, 200, 230, 443
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 405
GlaI GCGC 4 cut(s) 86, 387, 417, 425
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 26, 361, 460, 502, 532
HhaI GCGC 4 cut(s) 87, 388, 418, 426
Hin1I GRCGYC 1 cut(s) 474
Hin6I GCGC 4 cut(s) 85, 386, 416, 424
HinP1I GCGC 4 cut(s) 85, 386, 416, 424
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 3 cut(s) 399, 431, 465
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 5 cut(s) 26, 361, 460, 502, 532
HphI GGTGA 6 cut(s) 15, 155, 168, 217, 346, 532
Hpy166II GTNNAC 2 cut(s) 430, 439
Hpy188I TCNGA 3 cut(s) 69, 379, 526
Hpy188III TCNNGA 4 cut(s) 131, 194, 361, 502
Hpy8I GTNNAC 2 cut(s) 430, 439
Hpy99I CGWCG 4 cut(s) 62, 80, 143, 476
HpyCH4III ACNGT 3 cut(s) 171, 229, 358
HpyCH4IV ACGT 2 cut(s) 210, 474
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 376, 509
HpySE526I ACGT 2 cut(s) 210, 474
Hsp92I GRCGYC 1 cut(s) 474
HspAI GCGC 4 cut(s) 85, 386, 416, 424
Kpn2I TCCGGA 2 cut(s) 360, 501
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 4 cut(s) 69, 498, 521, 548
LmnI GCTCC 4 cut(s) 42, 92, 504, 560
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 405
MaeII ACGT 2 cut(s) 210, 474
MalI GATC 4 cut(s) 71, 500, 523, 550
MboI GATC 4 cut(s) 69, 498, 521, 548
MboII GAAGA 5 cut(s) 117, 241, 247, 300, 455
MflI RGATCY 2 cut(s) 521, 548
MhlI GDGCHC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 425
MroI TCCGGA 2 cut(s) 360, 501
MseI TTAA 1 cut(s) 438
MspI CCGG 5 cut(s) 26, 361, 460, 502, 532
MspR9I CCNGG 3 cut(s) 17, 44, 532
MvaI CCWGG 2 cut(s) 17, 44
MvnI CGCG 2 cut(s) 416, 426
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 532
NdeII GATC 4 cut(s) 69, 498, 521, 548
NlaIV GGNNCC 2 cut(s) 506, 523
PasI CCCWGGG 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 2 cut(s) 399, 465
PflFI GACNNNGTC 1 cut(s) 200
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 15, 42
PspGI CCWGG 2 cut(s) 15, 42
PspN4I GGNNCC 2 cut(s) 506, 523
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 521, 548
PsyI GACNNNGTC 1 cut(s) 200
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 4 cut(s) 69, 498, 521, 548
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 3 cut(s) 17, 44, 532
SduI GDGCHC 1 cut(s) 23
SetI ASST 5 cut(s) 39, 213, 283, 346, 477
SfaNI GCATC 1 cut(s) 478
SsiI CCGC 5 cut(s) 54, 111, 179, 414, 478
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 15, 42, 530
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 3 cut(s) 171, 229, 358
TaiI ACGT 2 cut(s) 213, 477
TaqI TCGA 2 cut(s) 138, 471
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 399, 465
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TspDTI ATGAA 1 cut(s) 457
Tth111I GACNNNGTC 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 1 cut(s) 405
ZraI GACGTC 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.