MD16G1281100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013331
Physical Location & Seq
Forward (+)
38285712 .. 38286967
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1281100.v1.1.491

Sequence Viewer

Length: 534 bp
ATGCAAAGACAGTCACTGGGCGGGTCACCGGCGTCGAAGCTCCACCAGACACACGGCGGACCCAACGACCAGACCCTCACCGTCGTTGACTCCCCCAACCGCAATAAGGACCTTTCAGTCTTTTCTACCACCGCTTCCACCTCCTCCTCCTCCTCCTCAATCTCTGCTGCCTACCAAGACGACGAGGATCACAAAGCATCGAAGCCTCACCGTCTGTCGTCACCGCCGCCCATCGCACCACACAAATCCATCCACGTCATCCCCGTCCTCACTCTCCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACATCCCCTCCCAATCAGATTTGGCTCAGTTCAATGGCTTCACTAAACTGCCTGGATCGGCGAAACGCGTAGTTTCTGCCGACAGCGAAATCGATGACATCGGGCGATTTATTGACATCCGGAAGAGCGATGTTTTGGCTATCCGAAGCCTCCGGAATTTGCAGGACACCCAAACCCAAAAACTCGTCCCCAGATCTCGCTCTCATCGAAAAATCGCCGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.38

Weight (kDa)

9.61

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccII CGCG 1 cut(s) 375
AccIII TCCGGA 2 cut(s) 426, 459
AciI CCGC 6 cut(s) 21, 57, 100, 132, 224, 227
AclWI GGATC 2 cut(s) 195, 370
AcsI RAATTY 1 cut(s) 463
AcyI GRCGYC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 1 cut(s) 340
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 2 cut(s) 195, 370
AlwNI CAGNNNCTG 1 cut(s) 16
Aor13HI TCCGGA 2 cut(s) 426, 459
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 463
AspS9I GGNCC 2 cut(s) 59, 109
AsuHPI GGTGA 4 cut(s) 18, 70, 200, 213
AvaII GGWCC 2 cut(s) 59, 109
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 239, 257
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 360
BglII AGATCT 1 cut(s) 500
BisI GCNGC 2 cut(s) 168, 227
BlsI GCNGC 2 cut(s) 169, 228
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 2 cut(s) 59, 109
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 59, 109
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 32
BsaWI WCCGGW 2 cut(s) 426, 459
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 21
BseAI TCCGGA 2 cut(s) 426, 459
BseBI CCWGG 1 cut(s) 360
BseCI ATCGAT 1 cut(s) 399
BseGI GGATG 5 cut(s) 249, 258, 288, 309, 423
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 6 cut(s) 133, 136, 139, 142, 145, 266
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 375
BshVI ATCGAT 1 cut(s) 399
BsiSI CCGG 3 cut(s) 29, 427, 460
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 479
Bsp13I TCCGGA 2 cut(s) 426, 459
Bsp143I GATC 3 cut(s) 187, 362, 500
BspACI CCGC 6 cut(s) 21, 57, 100, 132, 224, 227
BspCNI CTCAG 1 cut(s) 346
BspDI ATCGAT 1 cut(s) 399
BspEI TCCGGA 2 cut(s) 426, 459
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 2 cut(s) 195, 370
BspQI GCTCTTC 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 3 cut(s) 187, 362, 500
BssNI GRCGYC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 3 cut(s) 12, 82, 212
Bst6I CTCTTC 3 cut(s) 299, 305, 425
BstACI GRCGYC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 333
BstEII GGTNACC 1 cut(s) 24
BstF5I GGATG 5 cut(s) 249, 258, 288, 309, 423
BstFNI CGCG 1 cut(s) 375
BstKTI GATC 3 cut(s) 190, 365, 503
BstMBI GATC 3 cut(s) 187, 362, 500
BstNI CCWGG 1 cut(s) 360
BstPI GGTNACC 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 358
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 500
BstYI RGATCY 1 cut(s) 500
Bsu15I ATCGAT 1 cut(s) 399
BsuTUI ATCGAT 1 cut(s) 399
BtgZI GCGATG 2 cut(s) 217, 450
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 5 cut(s) 249, 258, 288, 309, 423
BtsIMutI CAGTG 1 cut(s) 14
CaiI CAGNNNCTG 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 59, 109
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 1 cut(s) 21
CviJI RGCY 6 cut(s) 40, 205, 332, 345, 446, 456
CviKI_1 RGCY 6 cut(s) 40, 205, 332, 345, 446, 456
DdeI CTNAG 1 cut(s) 333
DpnI GATC 3 cut(s) 189, 364, 502
DpnII GATC 3 cut(s) 187, 362, 500
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 3 cut(s) 299, 305, 425
EarI CTCTTC 3 cut(s) 299, 305, 425
EciI GGCGGA 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 59, 109
Eco91I GGTNACC 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 109
EcoO65I GGTNACC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 358
FaqI GGGAC 1 cut(s) 479
FauI CCCGC 1 cut(s) 14
Fnu4HI GCNGC 2 cut(s) 168, 227
FokI GGATG 5 cut(s) 236, 245, 275, 296, 410
Fsp4HI GCNGC 2 cut(s) 168, 227
GluI GCNGC 2 cut(s) 168, 227
HapII CCGG 3 cut(s) 29, 427, 460
HgaI GACGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 89
HpaII CCGG 3 cut(s) 29, 427, 460
HphI GGTGA 4 cut(s) 18, 70, 200, 213
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 325, 452
Hpy188III TCNNGA 2 cut(s) 427, 460
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 3 cut(s) 37, 86, 185
HpyCH4III ACNGT 3 cut(s) 12, 82, 212
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 4, 469
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 32
Kpn2I TCCGGA 2 cut(s) 426, 459
Kzo9I GATC 3 cut(s) 187, 362, 500
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 206
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 12, 24, 219
MalI GATC 3 cut(s) 189, 364, 502
MboI GATC 3 cut(s) 187, 362, 500
MboII GAAGA 3 cut(s) 286, 292, 442
MflI RGATCY 1 cut(s) 500
MluCI AATT 1 cut(s) 463
MluI ACGCGT 1 cut(s) 373
MlyI GAGTC 1 cut(s) 83
MroI TCCGGA 2 cut(s) 426, 459
MseI TTAA 1 cut(s) 532
MspI CCGG 3 cut(s) 29, 427, 460
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 1 cut(s) 375
NdeII GATC 3 cut(s) 187, 362, 500
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 3 cut(s) 12, 24, 219
PciSI GCTCTTC 1 cut(s) 425
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 511
PkrI GCNGC 2 cut(s) 169, 228
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 358
PspEI GGTNACC 1 cut(s) 24
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 59, 109
PspPPI RGGWCCY 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 532
SatI GCNGC 2 cut(s) 168, 227
Sau3AI GATC 3 cut(s) 187, 362, 500
Sau96I GGNCC 2 cut(s) 59, 109
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 360
SetI ASST 4 cut(s) 42, 114, 143, 258
SfaNI GCATC 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 2 cut(s) 59, 109
Sse9I AATT 1 cut(s) 463
SsiI CCGC 6 cut(s) 21, 57, 100, 132, 224, 227
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 3 cut(s) 12, 82, 212
TaiI ACGT 1 cut(s) 258
TaqI TCGA 4 cut(s) 35, 200, 399, 514
TasI AATT 1 cut(s) 463
TauI GCSGC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 532
Tru9I TTAA 1 cut(s) 532
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 3 cut(s) 12, 24, 219
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 3 cut(s) 12, 24, 219
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 59, 109
XapI RAATTY 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.