Rw7G022100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013331
Physical Location & Seq
Reverse (-)
25927338 .. 25928017
680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022100.1

Sequence Viewer

Length: 435 bp
ATGCAAAGGCAGTCCCTGGGCTCACCGGTCTCCAAGCTCCACCAGGCCCACGGCGGCGACGACACTCTGATCCACGACGACAAGCGCTCCAAGGACATTTTAGCCTTTTCCCCTCACCGACTGTCCTCACCGCCTCCCACCACTCCCGACAAAGTCATCCACGTCATCCCTATCCTCACCGTCCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACACACCATCCCAGTCAGATTTGGCTCAGTTCAATGGATTCACTAGACTATCCGCGCCCGAGCGCGTAGACTCTGTTAACGAAGAAATCGGCGACATCCGGCGATTCATCGACGTCCGGAAAAGCGATGCGTTGGCGATCCGGAGCCTGAGGGACTTAGGATCCGAAACCCGGAAACTCACCCCGAGATCTCGCTCCCACAGAAAAATCGCCGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.2

Weight (kDa)

9.64

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 282
AccII CGCG 2 cut(s) 269, 279
AccIII TCCGGA 2 cut(s) 330, 354
AciI CCGC 3 cut(s) 54, 131, 267
AclWI GGATC 4 cut(s) 64, 346, 369, 382
AcyI GRCGYC 1 cut(s) 327
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 384
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 247
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 15, 42
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 4 cut(s) 64, 346, 369, 382
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 2 cut(s) 272, 397
Aor13HI TCCGGA 2 cut(s) 330, 354
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 1 cut(s) 45
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 3 cut(s) 87, 271, 279
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 5 cut(s) 15, 107, 120, 169, 385
AvaI CYCGRG 2 cut(s) 272, 397
AxyI CCTNAGG 1 cut(s) 362
BamHI GGATCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 23
BccI CCATC 1 cut(s) 229
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 17, 44
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 88
BglII AGATCT 1 cut(s) 401
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 17, 44, 385
BmeT110I CYCGRG 2 cut(s) 272, 397
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 359, 376
BmrFI CCNGG 3 cut(s) 17, 44, 385
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 385
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 15, 16, 49, 90
BsaWI WCCGGW 3 cut(s) 25, 330, 354
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 226
Bse21I CCTNAGG 1 cut(s) 362
BseAI TCCGGA 2 cut(s) 330, 354
BseBI CCWGG 2 cut(s) 17, 44
BseDI CCNNGG 4 cut(s) 15, 16, 49, 90
BseGI GGATG 5 cut(s) 156, 165, 195, 221, 309
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 254, 353
BseNI ACTGG 1 cut(s) 226
Bsh1236I CGCG 2 cut(s) 269, 279
BshFI GGCC 1 cut(s) 47
BshTI ACCGGT 1 cut(s) 25
BsiHKCI CYCGRG 2 cut(s) 272, 397
BsiSI CCGG 5 cut(s) 26, 313, 331, 355, 385
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 2 cut(s) 272, 397
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 2 cut(s) 330, 354
Bsp143I GATC 4 cut(s) 69, 351, 374, 401
BspACI CCGC 3 cut(s) 54, 131, 267
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 253, 354
BspEI TCCGGA 2 cut(s) 330, 354
BspFNI CGCG 2 cut(s) 269, 279
BspLI GGNNCC 2 cut(s) 359, 376
BspPI GGATC 4 cut(s) 64, 346, 369, 382
BspTNI GGTCTC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 15, 16, 49, 90
BssMI GATC 4 cut(s) 69, 351, 374, 401
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 17, 44
Bst4CI ACNGT 2 cut(s) 123, 181
Bst6I CTCTTC 2 cut(s) 206, 212
BstACI GRCGYC 1 cut(s) 327
BstDEI CTNAG 3 cut(s) 240, 362, 370
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 5 cut(s) 156, 165, 195, 221, 309
BstFNI CGCG 2 cut(s) 269, 279
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 3 cut(s) 87, 271, 279
BstKTI GATC 4 cut(s) 72, 354, 377, 404
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 4 cut(s) 69, 351, 374, 401
BstNI CCWGG 2 cut(s) 17, 44
BstSCI CCNGG 3 cut(s) 15, 42, 383
BstUI CGCG 2 cut(s) 269, 279
BstX2I RGATCY 2 cut(s) 374, 401
BstYI RGATCY 2 cut(s) 374, 401
Bsu36I CCTNAGG 1 cut(s) 362
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 5 cut(s) 156, 165, 195, 221, 309
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 3 cut(s) 87, 271, 279
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 46
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 6 cut(s) 21, 37, 47, 104, 239, 360
CviKI_1 RGCY 6 cut(s) 21, 37, 47, 104, 239, 360
DdeI CTNAG 3 cut(s) 240, 362, 370
DpnI GATC 4 cut(s) 71, 353, 376, 403
DpnII GATC 4 cut(s) 69, 351, 374, 401
Eam1104I CTCTTC 2 cut(s) 206, 212
EarI CTCTTC 2 cut(s) 206, 212
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 34
Eco47III AGCGCT 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 362
Eco88I CYCGRG 2 cut(s) 272, 397
EcoRII CCWGG 2 cut(s) 15, 42
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 90
FaqI GGGAC 1 cut(s) 380
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 5 cut(s) 143, 152, 182, 208, 296
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 258
GlaI GCGC 3 cut(s) 86, 270, 278
GluI GCNGC 1 cut(s) 55
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 26, 313, 331, 355, 385
HhaI GCGC 3 cut(s) 87, 271, 279
Hin1I GRCGYC 1 cut(s) 327
Hin6I GCGC 3 cut(s) 85, 269, 277
HinP1I GCGC 3 cut(s) 85, 269, 277
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 3 cut(s) 252, 284, 318
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 5 cut(s) 26, 313, 331, 355, 385
HphI GGTGA 5 cut(s) 15, 107, 120, 169, 385
Hpy166II GTNNAC 2 cut(s) 283, 292
Hpy188I TCNGA 3 cut(s) 69, 232, 379
Hpy188III TCNNGA 3 cut(s) 146, 331, 355
Hpy8I GTNNAC 2 cut(s) 283, 292
Hpy99I CGWCG 3 cut(s) 62, 80, 329
HpyCH4III ACNGT 2 cut(s) 123, 181
HpyCH4IV ACGT 2 cut(s) 162, 327
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 3 cut(s) 240, 362, 370
HpySE526I ACGT 2 cut(s) 162, 327
Hsp92I GRCGYC 1 cut(s) 327
HspAI GCGC 3 cut(s) 85, 269, 277
Kpn2I TCCGGA 2 cut(s) 330, 354
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 4 cut(s) 69, 351, 374, 401
LmnI GCTCC 4 cut(s) 42, 92, 357, 413
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 258
MaeII ACGT 2 cut(s) 162, 327
MalI GATC 4 cut(s) 71, 353, 376, 403
MboI GATC 4 cut(s) 69, 351, 374, 401
MboII GAAGA 3 cut(s) 193, 199, 308
MflI RGATCY 2 cut(s) 374, 401
MhlI GDGCHC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 9 cut(s) 123, 136, 144, 185, 194, 203, 209, 215, 357
MroI TCCGGA 2 cut(s) 330, 354
MseI TTAA 1 cut(s) 291
MspI CCGG 5 cut(s) 26, 313, 331, 355, 385
MspR9I CCNGG 3 cut(s) 17, 44, 385
MvaI CCWGG 2 cut(s) 17, 44
MvnI CGCG 2 cut(s) 269, 279
NciI CCSGG 1 cut(s) 385
NdeII GATC 4 cut(s) 69, 351, 374, 401
NlaIV GGNNCC 2 cut(s) 359, 376
PasI CCCWGGG 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 2 cut(s) 252, 318
PflFI GACNNNGTC 1 cut(s) 152
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 15, 42
PspGI CCWGG 2 cut(s) 15, 42
PspN4I GGNNCC 2 cut(s) 359, 376
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 374, 401
PsyI GACNNNGTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 4 cut(s) 69, 351, 374, 401
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 3 cut(s) 17, 44, 385
SduI GDGCHC 1 cut(s) 23
SetI ASST 3 cut(s) 39, 165, 330
SfaNI GCATC 1 cut(s) 331
SsiI CCGC 3 cut(s) 54, 131, 267
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 3 cut(s) 15, 42, 383
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 123, 181
TaiI ACGT 2 cut(s) 165, 330
TaqI TCGA 1 cut(s) 324
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 252, 318
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 310
Tth111I GACNNNGTC 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 1 cut(s) 258
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.