Rmu_ssc0000317.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000317.1
OG0013331
Physical Location & Seq
Reverse (-)
25453 .. 26131
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000317.1_g000007.1.cds

Sequence Viewer

Length: 492 bp
atgcaaaggcagtccctgggctcaccggtctccaagctccaccaggcccacggcggcgacgacactctgatccacgacgacaagcgctccaaggacattttagccttttccgcctccgcctcctcctcctcctcttctccagacttcgacgacaacaaagcaacaaagcctcaccgactgtcctcaccgcctcccaccactcccgacaaagtcatccacgtcatccctatcctcaccgtcctctgcttcctcatcctcttcctcttctcccacacaccctcccagtcagatttggctcagttcaatggattcactagactatccgcgcccaagcgcgtagactctgttaacgacgaaatcggcgacatccggcgattcatcgacgtccggaaaagcgatgcgttggcgatccggagcctgagagacttaggatccgaaacccggaaactcaccccgagatctcgctcccacagaaaaatcgccgatttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.07

Weight (kDa)

9.66

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccI GTMKAC 1 cut(s) 339
AccII CGCG 2 cut(s) 326, 336
AccIII TCCGGA 2 cut(s) 387, 411
AciI CCGC 5 cut(s) 54, 111, 117, 188, 324
AclWI GGATC 4 cut(s) 64, 403, 426, 439
AcyI GRCGYC 1 cut(s) 384
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 441
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 304
AjiI CACGTC 1 cut(s) 220
AjnI CCWGG 2 cut(s) 15, 42
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 2 cut(s) 34, 417
AlwI GGATC 4 cut(s) 64, 403, 426, 439
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 454
Aor13HI TCCGGA 2 cut(s) 387, 411
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 1 cut(s) 45
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 3 cut(s) 87, 328, 336
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 5 cut(s) 15, 164, 177, 226, 442
AvaI CYCGRG 1 cut(s) 454
BamHI GGATCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 17, 44
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 34, 417
BfaI CTAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 88
BglII AGATCT 1 cut(s) 458
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 17, 44, 442
BmeT110I CYCGRG 1 cut(s) 454
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 416, 433
BmrFI CCNGG 3 cut(s) 17, 44, 442
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 388
BmuI ACTGGG 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 442
BsaHI GRCGYC 1 cut(s) 384
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 15, 16, 49, 90
BsaWI WCCGGW 3 cut(s) 25, 387, 411
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 283
BseAI TCCGGA 2 cut(s) 387, 411
BseBI CCWGG 2 cut(s) 17, 44
BseDI CCNNGG 4 cut(s) 15, 16, 49, 90
BseGI GGATG 4 cut(s) 213, 222, 252, 366
BseLI CCNNNNNNNGG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 311, 410
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 4 cut(s) 112, 115, 118, 121
Bsh1236I CGCG 2 cut(s) 326, 336
BshFI GGCC 1 cut(s) 47
BshTI ACCGGT 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 454
BsiSI CCGG 5 cut(s) 26, 370, 388, 412, 442
BslI CCNNNNNNNGG 1 cut(s) 441
BsmAI GTCTC 2 cut(s) 34, 417
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 2 cut(s) 387, 411
Bsp143I GATC 4 cut(s) 69, 408, 431, 458
BspACI CCGC 5 cut(s) 54, 111, 117, 188, 324
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 310, 411
BspEI TCCGGA 2 cut(s) 387, 411
BspFNI CGCG 2 cut(s) 326, 336
BspLI GGNNCC 2 cut(s) 416, 433
BspPI GGATC 4 cut(s) 64, 403, 426, 439
BspTNI GGTCTC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 15, 16, 49, 90
BssMI GATC 4 cut(s) 69, 408, 431, 458
BssNI GRCGYC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 17, 44
Bst4CI ACNGT 2 cut(s) 180, 238
Bst6I CTCTTC 3 cut(s) 139, 263, 269
BstACI GRCGYC 1 cut(s) 384
BstDEI CTNAG 3 cut(s) 297, 419, 427
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 4 cut(s) 213, 222, 252, 366
BstFNI CGCG 2 cut(s) 326, 336
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 3 cut(s) 87, 328, 336
BstKTI GATC 4 cut(s) 72, 411, 434, 461
BstMAI GTCTC 2 cut(s) 34, 417
BstMBI GATC 4 cut(s) 69, 408, 431, 458
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 17, 44
BstSCI CCNGG 3 cut(s) 15, 42, 440
BstUI CGCG 2 cut(s) 326, 336
BstX2I RGATCY 2 cut(s) 431, 458
BstYI RGATCY 2 cut(s) 431, 458
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 4 cut(s) 213, 222, 252, 366
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 3 cut(s) 87, 328, 336
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 46
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 7 cut(s) 21, 37, 47, 104, 169, 296, 417
CviKI_1 RGCY 7 cut(s) 21, 37, 47, 104, 169, 296, 417
DdeI CTNAG 3 cut(s) 297, 419, 427
DpnI GATC 4 cut(s) 71, 410, 433, 460
DpnII GATC 4 cut(s) 69, 408, 431, 458
Eam1104I CTCTTC 3 cut(s) 139, 263, 269
EarI CTCTTC 3 cut(s) 139, 263, 269
EciI GGCGGA 2 cut(s) 100, 106
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 34
Eco47III AGCGCT 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 454
EcoRII CCWGG 2 cut(s) 15, 42
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 4 cut(s) 200, 209, 239, 353
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 315
GlaI GCGC 3 cut(s) 86, 327, 335
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 26, 370, 388, 412, 442
HhaI GCGC 3 cut(s) 87, 328, 336
Hin1I GRCGYC 1 cut(s) 384
Hin6I GCGC 3 cut(s) 85, 326, 334
HinP1I GCGC 3 cut(s) 85, 326, 334
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 3 cut(s) 309, 341, 375
HpaI GTTAAC 1 cut(s) 349
HpaII CCGG 5 cut(s) 26, 370, 388, 412, 442
HphI GGTGA 5 cut(s) 15, 164, 177, 226, 442
Hpy166II GTNNAC 2 cut(s) 340, 349
Hpy188I TCNGA 3 cut(s) 69, 289, 436
Hpy188III TCNNGA 4 cut(s) 140, 203, 388, 412
Hpy8I GTNNAC 2 cut(s) 340, 349
Hpy99I CGWCG 5 cut(s) 62, 80, 152, 356, 386
HpyCH4III ACNGT 2 cut(s) 180, 238
HpyCH4IV ACGT 2 cut(s) 219, 384
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 297, 419, 427
HpySE526I ACGT 2 cut(s) 219, 384
Hsp92I GRCGYC 1 cut(s) 384
HspAI GCGC 3 cut(s) 85, 326, 334
Kpn2I TCCGGA 2 cut(s) 387, 411
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 4 cut(s) 69, 408, 431, 458
LmnI GCTCC 4 cut(s) 42, 92, 414, 470
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 315
MaeII ACGT 2 cut(s) 219, 384
MalI GATC 4 cut(s) 71, 410, 433, 460
MboI GATC 4 cut(s) 69, 408, 431, 458
MboII GAAGA 3 cut(s) 126, 250, 256
MflI RGATCY 2 cut(s) 431, 458
MhlI GDGCHC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 335
MroI TCCGGA 2 cut(s) 387, 411
MseI TTAA 1 cut(s) 348
MspI CCGG 5 cut(s) 26, 370, 388, 412, 442
MspR9I CCNGG 3 cut(s) 17, 44, 442
MvaI CCWGG 2 cut(s) 17, 44
MvnI CGCG 2 cut(s) 326, 336
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 442
NdeII GATC 4 cut(s) 69, 408, 431, 458
NlaIV GGNNCC 2 cut(s) 416, 433
PasI CCCWGGG 1 cut(s) 16
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 360
PfeI GAWTC 2 cut(s) 309, 375
PflFI GACNNNGTC 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 2 cut(s) 15, 42
PspGI CCWGG 2 cut(s) 15, 42
PspN4I GGNNCC 2 cut(s) 416, 433
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 431, 458
PsyI GACNNNGTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 4 cut(s) 69, 408, 431, 458
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 3 cut(s) 17, 44, 442
SduI GDGCHC 1 cut(s) 23
SetI ASST 3 cut(s) 39, 222, 387
SfaNI GCATC 1 cut(s) 388
SsiI CCGC 5 cut(s) 54, 111, 117, 188, 324
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 3 cut(s) 15, 42, 440
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 180, 238
TaiI ACGT 2 cut(s) 222, 387
TaqI TCGA 2 cut(s) 147, 381
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 309, 375
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TspDTI ATGAA 1 cut(s) 367
Tth111I GACNNNGTC 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 1 cut(s) 315
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.