Rroxscaffold_3G00247720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013331
Physical Location & Seq
Forward (+)
41122182 .. 41123958
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247720.1

Sequence Viewer

Length: 489 bp
ATGCAAAGGCAGTCCCTGGGCTCACCGGTCTCCAAGCTCCACCAGGCCCACGGCGGCGACGACACTCTGACCCACGACGACAAGCGCTCCAAGGACATTTTAGCCTTTTCCGCCTCCTCCTCCTCCTCCTCTTCTGCAGACTTCGACGACAACAAAGCAACAAAGCCTCACCGACTGTCCTCACCGCCTCCCACCACTCCCGACAAAATCATCCACGTCATCCCTATCCTCACCGTTCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACACACCCTCCCAGTCAGATTTGGCTCAGTTCAATGGATTCACTAGACTATCCGCGCCGCAGCGTGTAGACTCTGTTGACGAAGAAATCGGCGACATCCGGCGATTCATCGATGTCCGGAAAAGCGATGCGTTGGCGATCCGGAGCCTGAGGGACTTAGGATCCGAAACCCGGAAACTCACCCCGAGATCTCGCTCCCACAGAAAAATCGCCGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.99

Weight (kDa)

9.25

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 323
AccIII TCCGGA 2 cut(s) 384, 408
AciI CCGC 5 cut(s) 54, 111, 185, 321, 326
AclWI GGATC 3 cut(s) 400, 423, 436
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 438
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 301
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 2 cut(s) 15, 42
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 3 cut(s) 400, 423, 436
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 451
Aor13HI TCCGGA 2 cut(s) 384, 408
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 328
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 2 cut(s) 87, 325
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 5 cut(s) 15, 161, 174, 223, 439
AvaI CYCGRG 1 cut(s) 451
AxyI CCTNAGG 1 cut(s) 416
BamHI GGATCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 17, 44
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 88
BglII AGATCT 1 cut(s) 455
BisI GCNGC 3 cut(s) 55, 326, 329
BlsI GCNGC 3 cut(s) 56, 327, 330
Bme1390I CCNGG 3 cut(s) 17, 44, 439
BmeT110I CYCGRG 1 cut(s) 451
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 413, 430
BmrFI CCNGG 3 cut(s) 17, 44, 439
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 439
Bsa29I ATCGAT 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 15, 16, 49, 90
BsaWI WCCGGW 3 cut(s) 25, 384, 408
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 280
Bse21I CCTNAGG 1 cut(s) 416
BseAI TCCGGA 2 cut(s) 384, 408
BseBI CCWGG 2 cut(s) 17, 44
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 4 cut(s) 15, 16, 49, 90
BseGI GGATG 4 cut(s) 210, 219, 249, 363
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 2 cut(s) 308, 407
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 5 cut(s) 106, 109, 112, 115, 118
BseXI GCAGC 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 1 cut(s) 47
BshTI ACCGGT 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 5 cut(s) 26, 367, 385, 409, 439
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 2 cut(s) 384, 408
Bsp143I GATC 3 cut(s) 405, 428, 455
BspACI CCGC 5 cut(s) 54, 111, 185, 321, 326
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 307, 408
BspDI ATCGAT 1 cut(s) 378
BspEI TCCGGA 2 cut(s) 384, 408
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 413, 430
BspMAI CTGCAG 1 cut(s) 139
BspPI GGATC 3 cut(s) 400, 423, 436
BspTNI GGTCTC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 15, 16, 49, 90
BssMI GATC 3 cut(s) 405, 428, 455
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 17, 44
Bst4CI ACNGT 2 cut(s) 177, 235
Bst6I CTCTTC 3 cut(s) 136, 260, 266
BstDEI CTNAG 3 cut(s) 294, 416, 424
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 4 cut(s) 210, 219, 249, 363
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 2 cut(s) 87, 325
BstKTI GATC 3 cut(s) 408, 431, 458
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 405, 428, 455
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 17, 44
BstSCI CCNGG 3 cut(s) 15, 42, 437
BstSFI CTRYAG 1 cut(s) 135
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 2 cut(s) 428, 455
BstYI RGATCY 2 cut(s) 428, 455
Bsu15I ATCGAT 1 cut(s) 378
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 1 cut(s) 47
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 408
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 4 cut(s) 210, 219, 249, 363
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 2 cut(s) 87, 325
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 378
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 7 cut(s) 21, 37, 47, 104, 166, 293, 414
CviKI_1 RGCY 7 cut(s) 21, 37, 47, 104, 166, 293, 414
DdeI CTNAG 3 cut(s) 294, 416, 424
DpnI GATC 3 cut(s) 407, 430, 457
DpnII GATC 3 cut(s) 405, 428, 455
Eam1104I CTCTTC 3 cut(s) 136, 260, 266
EarI CTCTTC 3 cut(s) 136, 260, 266
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 34
Eco47III AGCGCT 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 416
Eco88I CYCGRG 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 15, 42
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 90
FaqI GGGAC 1 cut(s) 434
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 3 cut(s) 55, 326, 329
FokI GGATG 4 cut(s) 197, 206, 236, 350
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 55, 326, 329
FspBI CTAG 1 cut(s) 312
GlaI GCGC 2 cut(s) 86, 324
GluI GCNGC 3 cut(s) 55, 326, 329
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 26, 367, 385, 409, 439
HhaI GCGC 2 cut(s) 87, 325
Hin6I GCGC 2 cut(s) 85, 323
HinP1I GCGC 2 cut(s) 85, 323
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 3 cut(s) 306, 338, 372
HpaII CCGG 5 cut(s) 26, 367, 385, 409, 439
HphI GGTGA 5 cut(s) 15, 161, 174, 223, 439
Hpy166II GTNNAC 2 cut(s) 337, 346
Hpy188I TCNGA 3 cut(s) 69, 286, 433
Hpy188III TCNNGA 3 cut(s) 200, 385, 409
Hpy8I GTNNAC 2 cut(s) 337, 346
Hpy99I CGWCG 3 cut(s) 62, 80, 149
HpyCH4III ACNGT 2 cut(s) 177, 235
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 4, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 294, 416, 424
HpySE526I ACGT 1 cut(s) 216
HspAI GCGC 2 cut(s) 85, 323
Kpn2I TCCGGA 2 cut(s) 384, 408
Kzo9I GATC 3 cut(s) 405, 428, 455
LmnI GCTCC 4 cut(s) 42, 92, 411, 467
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 216
MalI GATC 3 cut(s) 407, 430, 457
MboI GATC 3 cut(s) 405, 428, 455
MboII GAAGA 4 cut(s) 123, 247, 253, 362
MflI RGATCY 2 cut(s) 428, 455
MhlI GDGCHC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 332
MroI TCCGGA 2 cut(s) 384, 408
MspI CCGG 5 cut(s) 26, 367, 385, 409, 439
MspR9I CCNGG 3 cut(s) 17, 44, 439
MvaI CCWGG 2 cut(s) 17, 44
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 439
NdeII GATC 3 cut(s) 405, 428, 455
NlaIV GGNNCC 2 cut(s) 413, 430
PasI CCCWGGG 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 2 cut(s) 306, 372
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 3 cut(s) 56, 327, 330
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 15, 42
PspGI CCWGG 2 cut(s) 15, 42
PspN4I GGNNCC 2 cut(s) 413, 430
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 428, 455
SatI GCNGC 3 cut(s) 55, 326, 329
Sau3AI GATC 3 cut(s) 405, 428, 455
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 17, 44, 439
SduI GDGCHC 1 cut(s) 23
SetI ASST 2 cut(s) 39, 219
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 135
SsiI CCGC 5 cut(s) 54, 111, 185, 321, 326
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 3 cut(s) 15, 42, 437
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 177, 235
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 144, 378
TauI GCSGC 2 cut(s) 57, 328
TfiI GAWTC 2 cut(s) 306, 372
TseI GCWGC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 364
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.