pycom16g25090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013331
Physical Location & Seq
Forward (+)
26847841 .. 26848555
715 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g25090.3

Sequence Viewer

Length: 528 bp
ATGCAAAGACAGTCACTGGGCGGGTCACCGGCGTCGAAGCTCCACCAGACACACGGCGGACCCAACGACCAGACCCTCACCGTCGTTGAGTCCCCCAACCGCAATAAGGACCTGTCAGTCTTTTCCACCACCGCCGCCTCCTCCTCCTCCTCAATCACTGCTGCCTACCAAGACGACGAGGATCACAAAGCATCGAAGCCTCACCGTCTGTCGTCACCGCCGCCCATCACACCACACAAATCCATCCACGTTATCCCCGTCCTCACTCTCCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACATCCCCTCCCAATCAGATTTGGCTCAGTTCAATGGCTTCACTAAACTGCCTGGATCGGCGAAACGCGTAGTTTCTGCCGACAGCGAAATCGATGACATCGGGCGATTTATTGACATCCGGAAGAGCGATGTTTTGGCTATCCGCAGCCTCCGGAATTTGCAGGACACCCAAACCCAAAAACTCGTCCCCAGATCTCGCTCTCATCGAAAAATCGCCGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.23

Weight (kDa)

9.61

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccII CGCG 1 cut(s) 369
AccIII TCCGGA 2 cut(s) 420, 453
AciI CCGC 8 cut(s) 21, 57, 100, 132, 135, 218, 221, 445
AclWI GGATC 2 cut(s) 189, 364
AcsI RAATTY 1 cut(s) 457
AcyI GRCGYC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 2 cut(s) 189, 364
AlwNI CAGNNNCTG 1 cut(s) 16
Aor13HI TCCGGA 2 cut(s) 420, 453
ApeKI GCWGC 2 cut(s) 161, 447
ApoI RAATTY 1 cut(s) 457
AspS9I GGNCC 2 cut(s) 59, 109
AsuHPI GGTGA 4 cut(s) 18, 70, 194, 207
AvaII GGWCC 2 cut(s) 59, 109
BbvI GCAGC 2 cut(s) 148, 459
BccI CCATC 2 cut(s) 233, 251
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 354
BglII AGATCT 1 cut(s) 494
BisI GCNGC 4 cut(s) 135, 162, 221, 448
BlsI GCNGC 4 cut(s) 136, 163, 222, 449
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 2 cut(s) 59, 109
BmgT120I GGNCC 2 cut(s) 59, 109
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 32
BsaWI WCCGGW 2 cut(s) 420, 453
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 21
BseAI TCCGGA 2 cut(s) 420, 453
BseBI CCWGG 1 cut(s) 354
BseCI ATCGAT 1 cut(s) 393
BseGI GGATG 4 cut(s) 243, 282, 303, 417
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 5 cut(s) 130, 133, 136, 139, 260
BseXI GCAGC 2 cut(s) 148, 459
Bsh1236I CGCG 1 cut(s) 369
BshVI ATCGAT 1 cut(s) 393
BsiSI CCGG 3 cut(s) 29, 421, 454
BslFI GGGAC 2 cut(s) 76, 473
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 76, 473
Bsp13I TCCGGA 2 cut(s) 420, 453
Bsp143I GATC 3 cut(s) 181, 356, 494
BspACI CCGC 8 cut(s) 21, 57, 100, 132, 135, 218, 221, 445
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 393
BspEI TCCGGA 2 cut(s) 420, 453
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 2 cut(s) 189, 364
BspQI GCTCTTC 1 cut(s) 419
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 3 cut(s) 181, 356, 494
BssNI GRCGYC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 12, 82, 206
Bst6I CTCTTC 3 cut(s) 293, 299, 419
BstACI GRCGYC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 327
BstEII GGTNACC 1 cut(s) 24
BstF5I GGATG 4 cut(s) 243, 282, 303, 417
BstFNI CGCG 1 cut(s) 369
BstKTI GATC 3 cut(s) 184, 359, 497
BstMBI GATC 3 cut(s) 181, 356, 494
BstNI CCWGG 1 cut(s) 354
BstPI GGTNACC 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 352
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 148, 459
BstX2I RGATCY 1 cut(s) 494
BstYI RGATCY 1 cut(s) 494
Bsu15I ATCGAT 1 cut(s) 393
BsuTUI ATCGAT 1 cut(s) 393
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 4 cut(s) 243, 282, 303, 417
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 14, 156
CaiI CAGNNNCTG 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 59, 109
ClaI ATCGAT 1 cut(s) 393
CseI GACGC 1 cut(s) 21
CviJI RGCY 6 cut(s) 40, 199, 326, 339, 440, 450
CviKI_1 RGCY 6 cut(s) 40, 199, 326, 339, 440, 450
DdeI CTNAG 1 cut(s) 327
DpnI GATC 3 cut(s) 183, 358, 496
DpnII GATC 3 cut(s) 181, 356, 494
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 3 cut(s) 293, 299, 419
EarI CTCTTC 3 cut(s) 293, 299, 419
EciI GGCGGA 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 59, 109
Eco91I GGTNACC 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 109
EcoO65I GGTNACC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 352
FaqI GGGAC 2 cut(s) 76, 473
FauI CCCGC 1 cut(s) 14
Fnu4HI GCNGC 4 cut(s) 135, 162, 221, 448
FokI GGATG 4 cut(s) 230, 269, 290, 404
Fsp4HI GCNGC 4 cut(s) 135, 162, 221, 448
GluI GCNGC 4 cut(s) 135, 162, 221, 448
HapII CCGG 3 cut(s) 29, 421, 454
HgaI GACGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 32
HinfI GANTC 1 cut(s) 89
HpaII CCGG 3 cut(s) 29, 421, 454
HphI GGTGA 4 cut(s) 18, 70, 194, 207
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 421, 454
Hpy99I CGWCG 3 cut(s) 37, 86, 179
HpyCH4III ACNGT 3 cut(s) 12, 82, 206
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 4, 463
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 32
Kpn2I TCCGGA 2 cut(s) 420, 453
Kzo9I GATC 3 cut(s) 181, 356, 494
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 2 cut(s) 148, 459
LweI GCATC 1 cut(s) 200
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 3 cut(s) 12, 24, 213
MalI GATC 3 cut(s) 183, 358, 496
MboI GATC 3 cut(s) 181, 356, 494
MboII GAAGA 3 cut(s) 280, 286, 436
MflI RGATCY 1 cut(s) 494
MluCI AATT 1 cut(s) 457
MluI ACGCGT 1 cut(s) 367
MlyI GAGTC 1 cut(s) 98
MroI TCCGGA 2 cut(s) 420, 453
MseI TTAA 1 cut(s) 526
MspI CCGG 3 cut(s) 29, 421, 454
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 369
NdeII GATC 3 cut(s) 181, 356, 494
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 3 cut(s) 12, 24, 213
PciSI GCTCTTC 1 cut(s) 419
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 505
PkrI GCNGC 4 cut(s) 136, 163, 222, 449
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 24
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 59, 109
PspPPI RGGWCCY 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 494
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 526
SatI GCNGC 4 cut(s) 135, 162, 221, 448
Sau3AI GATC 3 cut(s) 181, 356, 494
Sau96I GGNCC 2 cut(s) 59, 109
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 354
SetI ASST 3 cut(s) 42, 114, 252
SfaNI GCATC 1 cut(s) 200
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 2 cut(s) 59, 109
Sse9I AATT 1 cut(s) 457
SsiI CCGC 8 cut(s) 21, 57, 100, 132, 135, 218, 221, 445
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 3 cut(s) 12, 82, 206
TaiI ACGT 1 cut(s) 252
TaqI TCGA 4 cut(s) 35, 194, 393, 508
TasI AATT 1 cut(s) 457
TauI GCSGC 2 cut(s) 137, 223
Tru1I TTAA 1 cut(s) 526
Tru9I TTAA 1 cut(s) 526
TscAI CASTG 2 cut(s) 21, 163
TseFI GTSAC 3 cut(s) 12, 24, 213
TseI GCWGC 2 cut(s) 161, 447
Tsp45I GTSAC 3 cut(s) 12, 24, 213
TspRI CASTG 2 cut(s) 21, 163
VpaK11BI GGWCC 2 cut(s) 59, 109
XapI RAATTY 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.