Rh7DG266000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013331
Physical Location & Seq
Reverse (-)
28293043 .. 28295670
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG266000.1

Sequence Viewer

Length: 585 bp
ATGCAAAGGCAGTCCCTGGGCTCACCGGTCTCCAAGCTCCACCAGGCCCACGGCGGCGACGACACTCTGATCCACGACGACAAGCGCTCCAAGGACATTTTAGCCTTTTCCGCCTCCTCCTCCTCCTCTTCTCCAGACTTCGACGACAACAAAGCAACAAAGCCTCACCGACTGTCCTCACCGCCTCCCACCACTCCCGACAAAGTCATCCACGTCATCCCTATCCTCACCGTCCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACACACCCTCCCAGTCAGGTACTACCACTCCCTCTCTCCCTCACTCTTCTCATCTCAATCAACGGCTGTTGCTCTTTTCAGCTAAAATCCTCACCGTTCGGATTTTTTTGCTCTCAGATTTGGCTCAGTTCAATGGATTCACTGGACTATCCGCGCCCAAGCGCGTAGACTCTGTTAACGAAGAAATCGGCGACATCCGGCGATTCATCGACGTCCGGAAAAGCGATGCGTTGGCGATCAGGAGCCTGAGGGACTTAGGATCCGAAACCCGGAAACTCACCCCGAGATCTCGCTCCCACAGAAAAATCGCCGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.47

Weight (kDa)

9.92

Isoelectric Point (pI)

55.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 480
AccI GTMKAC 1 cut(s) 432
AccII CGCG 2 cut(s) 419, 429
AccIII TCCGGA 1 cut(s) 480
AciI CCGC 4 cut(s) 54, 111, 182, 417
AclWI GGATC 3 cut(s) 64, 519, 532
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 1 cut(s) 286
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 534
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 397
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 2 cut(s) 15, 42
AluBI AGCT 2 cut(s) 37, 347
AluI AGCT 2 cut(s) 37, 347
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 3 cut(s) 64, 519, 532
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 547
Aor13HI TCCGGA 1 cut(s) 480
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 1 cut(s) 45
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 3 cut(s) 87, 421, 429
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 535
AsuHPI GGTGA 6 cut(s) 15, 158, 171, 220, 349, 535
AvaI CYCGRG 1 cut(s) 547
AxyI CCTNAGG 1 cut(s) 512
BamHI GGATCC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 23
BceAI ACGGC 2 cut(s) 67, 344
BciT130I CCWGG 2 cut(s) 17, 44
BcnI CCSGG 1 cut(s) 535
BcoDI GTCTC 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 88
BglII AGATCT 1 cut(s) 551
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 17, 44, 535
BmeT110I CYCGRG 1 cut(s) 547
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 509, 526
BmrFI CCNGG 3 cut(s) 17, 44, 535
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 481
BmuI ACTGGG 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 15, 16, 49, 90
BsaWI WCCGGW 2 cut(s) 25, 480
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 257, 277, 287, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 534
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 277, 412
Bse21I CCTNAGG 1 cut(s) 512
BseAI TCCGGA 1 cut(s) 480
BseBI CCWGG 2 cut(s) 17, 44
BseDI CCNNGG 4 cut(s) 15, 16, 49, 90
BseGI GGATG 4 cut(s) 207, 216, 246, 459
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMII CTCAG 3 cut(s) 393, 404, 503
BseNI ACTGG 2 cut(s) 277, 412
BseRI GAGGAG 4 cut(s) 106, 109, 112, 115
Bsh1236I CGCG 2 cut(s) 419, 429
BshFI GGCC 1 cut(s) 47
BshTI ACCGGT 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 4 cut(s) 26, 463, 481, 535
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 480
Bsp143I GATC 4 cut(s) 69, 501, 524, 551
BspACI CCGC 4 cut(s) 54, 111, 182, 417
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 3 cut(s) 392, 403, 504
BspEI TCCGGA 1 cut(s) 480
BspFNI CGCG 2 cut(s) 419, 429
BspLI GGNNCC 2 cut(s) 509, 526
BspPI GGATC 3 cut(s) 64, 519, 532
BspTNI GGTCTC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 2 cut(s) 277, 412
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 15, 16, 49, 90
BssMI GATC 4 cut(s) 69, 501, 524, 551
BssNI GRCGYC 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 17, 44
Bst4CI ACNGT 3 cut(s) 174, 232, 361
Bst6I CTCTTC 4 cut(s) 133, 257, 263, 316
BstACI GRCGYC 1 cut(s) 477
BstDEI CTNAG 4 cut(s) 379, 390, 512, 520
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 4 cut(s) 207, 216, 246, 459
BstFNI CGCG 2 cut(s) 419, 429
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 3 cut(s) 87, 421, 429
BstKTI GATC 4 cut(s) 72, 504, 527, 554
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 4 cut(s) 69, 501, 524, 551
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 17, 44
BstSCI CCNGG 3 cut(s) 15, 42, 533
BstUI CGCG 2 cut(s) 419, 429
BstX2I RGATCY 2 cut(s) 524, 551
BstYI RGATCY 2 cut(s) 524, 551
Bsu36I CCTNAGG 1 cut(s) 512
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 504
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 4 cut(s) 207, 216, 246, 459
BtsIMutI CAGTG 1 cut(s) 405
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 3 cut(s) 87, 421, 429
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 285
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 9 cut(s) 21, 37, 47, 104, 163, 331, 347, 389, 510
CviKI_1 RGCY 9 cut(s) 21, 37, 47, 104, 163, 331, 347, 389, 510
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 4 cut(s) 379, 390, 512, 520
DpnI GATC 4 cut(s) 71, 503, 526, 553
DpnII GATC 4 cut(s) 69, 501, 524, 551
Eam1104I CTCTTC 4 cut(s) 133, 257, 263, 316
EarI CTCTTC 4 cut(s) 133, 257, 263, 316
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 34
Eco47III AGCGCT 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 15, 42
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 90
FaqI GGGAC 1 cut(s) 530
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 4 cut(s) 194, 203, 233, 446
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 55
GlaI GCGC 3 cut(s) 86, 420, 428
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 47
HapII CCGG 4 cut(s) 26, 463, 481, 535
HhaI GCGC 3 cut(s) 87, 421, 429
Hin1I GRCGYC 1 cut(s) 477
Hin6I GCGC 3 cut(s) 85, 419, 427
HinP1I GCGC 3 cut(s) 85, 419, 427
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 3 cut(s) 402, 434, 468
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 4 cut(s) 26, 463, 481, 535
HphI GGTGA 6 cut(s) 15, 158, 171, 220, 349, 535
Hpy166II GTNNAC 2 cut(s) 433, 442
Hpy188I TCNGA 4 cut(s) 69, 366, 382, 529
Hpy188III TCNNGA 4 cut(s) 134, 197, 481, 505
Hpy8I GTNNAC 2 cut(s) 433, 442
Hpy99I CGWCG 4 cut(s) 62, 80, 146, 479
HpyCH4III ACNGT 3 cut(s) 174, 232, 361
HpyCH4IV ACGT 2 cut(s) 213, 477
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 4 cut(s) 379, 390, 512, 520
HpySE526I ACGT 2 cut(s) 213, 477
Hsp92I GRCGYC 1 cut(s) 477
HspAI GCGC 3 cut(s) 85, 419, 427
Kpn2I TCCGGA 1 cut(s) 480
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 4 cut(s) 69, 501, 524, 551
LmnI GCTCC 4 cut(s) 42, 92, 507, 563
LweI GCATC 1 cut(s) 481
MaeII ACGT 2 cut(s) 213, 477
MalI GATC 4 cut(s) 71, 503, 526, 553
MboI GATC 4 cut(s) 69, 501, 524, 551
MboII GAAGA 5 cut(s) 120, 244, 250, 303, 458
MflI RGATCY 2 cut(s) 524, 551
MhlI GDGCHC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 428
MroI TCCGGA 1 cut(s) 480
MseI TTAA 1 cut(s) 441
MspI CCGG 4 cut(s) 26, 463, 481, 535
MspR9I CCNGG 3 cut(s) 17, 44, 535
MvaI CCWGG 2 cut(s) 17, 44
MvnI CGCG 2 cut(s) 419, 429
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 535
NdeII GATC 4 cut(s) 69, 501, 524, 551
NlaIV GGNNCC 2 cut(s) 509, 526
PasI CCCWGGG 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 2 cut(s) 402, 468
PflFI GACNNNGTC 1 cut(s) 203
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 15, 42
PspGI CCWGG 2 cut(s) 15, 42
PspN4I GGNNCC 2 cut(s) 509, 526
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 524, 551
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 4 cut(s) 69, 501, 524, 551
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 3 cut(s) 17, 44, 535
SduI GDGCHC 1 cut(s) 23
SetI ASST 5 cut(s) 39, 216, 286, 349, 480
SfaNI GCATC 1 cut(s) 481
SsiI CCGC 4 cut(s) 54, 111, 182, 417
StyD4I CCNGG 3 cut(s) 15, 42, 533
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 3 cut(s) 174, 232, 361
TaiI ACGT 2 cut(s) 216, 480
TaqI TCGA 2 cut(s) 141, 474
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 402, 468
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 460
TspRI CASTG 1 cut(s) 412
Tth111I GACNNNGTC 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 432
ZraI GACGTC 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.