pycom06g02040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013331
Physical Location & Seq
Reverse (-)
2507247 .. 2507960
714 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02040.2

Sequence Viewer

Length: 525 bp
ATGCAAAGACAGTCACTGGGCGGTTCGCCGTCGAAGCTCCACCAGGCCCACGGCGGACCCAAGGACCAGACTCTCACCGTCGATGACTCCCCCAACCGCATTAAGGATCTTTTAGCCTTTTCCACCACCGCCTCCTCCTCCTCCTCTTCAATCTCTGCAGCCTACGAAGGCGACGAGGACCACAAAGCATCGAAGCCTCACCGTCTTTCATCACCGCCGTCCATTGCACCGCACAAATCCATCCACGTCATCCCCGTCCTCACCCTCCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACGTCCCCTCCCAATCAGATTTGGCTCAGTTCAATGGCTTCACTAAACTGCCTGGATCGGCGAAGCGCGTAGTTTCTGCCGACAGCGAAATCGACGGCATCGGGCGATTTATTGACATCCGGAAGAGCGATGTTTTGGCGATCCGCAGCCTGAGGAATTTGCAGGACACCCAAACCCAAAAACTCGTCCCCAGATCTCGCTCTCACCGAAAAATCGCCGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

18.98

Weight (kDa)

9.72

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 366
AccIII TCCGGA 1 cut(s) 417
AciI CCGC 7 cut(s) 21, 54, 97, 129, 215, 230, 442
AclWI GGATC 3 cut(s) 114, 361, 433
AcsI RAATTY 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 2 cut(s) 150, 331
AjiI CACGTC 2 cut(s) 247, 301
AjnI CCWGG 2 cut(s) 42, 349
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
AlwI GGATC 3 cut(s) 114, 361, 433
AlwNI CAGNNNCTG 1 cut(s) 16
Aor13HI TCCGGA 1 cut(s) 417
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 158, 444
ApoI RAATTY 1 cut(s) 454
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 4 cut(s) 46, 56, 64, 178
AsuHPI GGTGA 5 cut(s) 67, 191, 204, 253, 494
AvaII GGWCC 3 cut(s) 56, 64, 178
AxyI CCTNAGG 1 cut(s) 449
BbvI GCAGC 2 cut(s) 170, 456
BccI CCATC 1 cut(s) 248
BceAI ACGGC 4 cut(s) 13, 67, 202, 409
BciT130I CCWGG 2 cut(s) 44, 351
BfmI CTRYAG 1 cut(s) 156
BglII AGATCT 1 cut(s) 491
BisI GCNGC 2 cut(s) 159, 445
BlsI GCNGC 2 cut(s) 160, 446
Bme1390I CCNGG 2 cut(s) 44, 351
Bme18I GGWCC 3 cut(s) 56, 64, 178
BmgBI CACGTC 2 cut(s) 247, 301
BmgT120I GGNCC 4 cut(s) 46, 56, 64, 178
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 44, 351
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 2 cut(s) 197, 405
BmuI ACTGGG 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 49, 60
BsaWI WCCGGW 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 21
Bse21I CCTNAGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 222
BseAI TCCGGA 1 cut(s) 417
BseBI CCWGG 2 cut(s) 44, 351
BseDI CCNNGG 2 cut(s) 49, 60
BseGI GGATG 4 cut(s) 240, 249, 279, 414
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 338, 440
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 5 cut(s) 124, 127, 130, 133, 257
BseXI GCAGC 2 cut(s) 170, 456
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 2 cut(s) 287, 470
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 287, 470
BsnI GGCC 1 cut(s) 47
Bsp13I TCCGGA 1 cut(s) 417
Bsp143I GATC 4 cut(s) 106, 353, 438, 491
BspACI CCGC 7 cut(s) 21, 54, 97, 129, 215, 230, 442
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 337, 441
BspEI TCCGGA 1 cut(s) 417
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 3 cut(s) 114, 361, 433
BspQI GCTCTTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 49, 60
BssMI GATC 4 cut(s) 106, 353, 438, 491
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 44, 351
Bst4CI ACNGT 3 cut(s) 12, 79, 203
Bst6I CTCTTC 4 cut(s) 151, 290, 296, 416
BstDEI CTNAG 2 cut(s) 324, 449
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 4 cut(s) 240, 249, 279, 414
BstFNI CGCG 1 cut(s) 366
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 4 cut(s) 109, 356, 441, 494
BstMBI GATC 4 cut(s) 106, 353, 438, 491
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 2 cut(s) 44, 351
BstSCI CCNGG 2 cut(s) 42, 349
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 170, 456
BstX2I RGATCY 2 cut(s) 106, 491
BstYI RGATCY 2 cut(s) 106, 491
Bsu36I CCTNAGG 1 cut(s) 449
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 441
BtrI CACGTC 2 cut(s) 247, 301
BtsCI GGATG 4 cut(s) 240, 249, 279, 414
BtsIMutI CAGTG 1 cut(s) 14
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 4 cut(s) 46, 56, 64, 178
CviJI RGCY 8 cut(s) 37, 47, 116, 161, 196, 323, 336, 447
CviKI_1 RGCY 8 cut(s) 37, 47, 116, 161, 196, 323, 336, 447
DdeI CTNAG 2 cut(s) 324, 449
DpnI GATC 4 cut(s) 108, 355, 440, 493
DpnII GATC 4 cut(s) 106, 353, 438, 491
Eam1104I CTCTTC 4 cut(s) 151, 290, 296, 416
EarI CTCTTC 4 cut(s) 151, 290, 296, 416
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 3 cut(s) 56, 64, 178
Eco81I CCTNAGG 1 cut(s) 449
EcoRII CCWGG 2 cut(s) 42, 349
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaqI GGGAC 2 cut(s) 287, 470
Fnu4HI GCNGC 2 cut(s) 159, 445
FokI GGATG 4 cut(s) 227, 236, 266, 401
Fsp4HI GCNGC 2 cut(s) 159, 445
GlaI GCGC 1 cut(s) 365
GluI GCNGC 2 cut(s) 159, 445
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 418
HhaI GCGC 1 cut(s) 366
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 2 cut(s) 70, 86
HpaII CCGG 1 cut(s) 418
HphI GGTGA 5 cut(s) 67, 191, 204, 253, 494
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 418
Hpy99I CGWCG 4 cut(s) 34, 83, 176, 395
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 3 cut(s) 12, 79, 203
HpyCH4IV ACGT 2 cut(s) 246, 300
HpyCH4V TGCA 4 cut(s) 4, 158, 227, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 324, 449
HpySE526I ACGT 2 cut(s) 246, 300
HspAI GCGC 1 cut(s) 364
Kpn2I TCCGGA 1 cut(s) 417
Kzo9I GATC 4 cut(s) 106, 353, 438, 491
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 2 cut(s) 170, 456
LweI GCATC 2 cut(s) 197, 405
MaeII ACGT 2 cut(s) 246, 300
MaeIII GTNAC 1 cut(s) 12
MalI GATC 4 cut(s) 108, 355, 440, 493
MboI GATC 4 cut(s) 106, 353, 438, 491
MboII GAAGA 4 cut(s) 138, 277, 283, 433
MflI RGATCY 2 cut(s) 106, 491
MluCI AATT 1 cut(s) 454
MlyI GAGTC 2 cut(s) 64, 80
MroI TCCGGA 1 cut(s) 417
MseI TTAA 2 cut(s) 102, 523
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 2 cut(s) 44, 351
MvaI CCWGG 2 cut(s) 44, 351
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 4 cut(s) 106, 353, 438, 491
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 416
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 252, 502
PkrI GCNGC 2 cut(s) 160, 446
PleI GAGTC 2 cut(s) 64, 80
PpsI GAGTC 2 cut(s) 64, 80
Psp6I CCWGG 2 cut(s) 42, 349
PspGI CCWGG 2 cut(s) 42, 349
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 4 cut(s) 46, 56, 64, 178
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 106, 491
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 2 cut(s) 102, 523
SatI GCNGC 2 cut(s) 159, 445
Sau3AI GATC 4 cut(s) 106, 353, 438, 491
Sau96I GGNCC 4 cut(s) 46, 56, 64, 178
SchI GAGTC 2 cut(s) 64, 80
ScrFI CCNGG 2 cut(s) 44, 351
SetI ASST 3 cut(s) 39, 249, 303
SfaNI GCATC 2 cut(s) 197, 405
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 3 cut(s) 56, 64, 178
Sse9I AATT 1 cut(s) 454
SsiI CCGC 7 cut(s) 21, 54, 97, 129, 215, 230, 442
StyD4I CCNGG 2 cut(s) 42, 349
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 12, 79, 203
TaiI ACGT 2 cut(s) 249, 303
TaqI TCGA 4 cut(s) 32, 81, 191, 390
TasI AATT 1 cut(s) 454
Tru1I TTAA 2 cut(s) 102, 523
Tru9I TTAA 2 cut(s) 102, 523
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 2 cut(s) 158, 444
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 3 cut(s) 56, 64, 178
XapI RAATTY 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.