RchiOBHm_Chr7g0211581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013331
Physical Location & Seq
Reverse (-)
28714866 .. 28716162
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18929

Sequence Viewer

Length: 591 bp
ATGAGAAATCCCCTATATATAAACGATAAAAATCTACACCCACAGGCCAGGTCACACAGCTCACACCTGTCTCTACTTCTTCTCCTCCTCTCTCTCTCTCTCACCATGCAAAGGCAGTCCCTGGGCTCACCGGTCTCCAAGCTCCACCAGGCCCACGGCGGCGACGACACTCTGATCCACGACGACAAGCGCTCCAAGGACATTTTAGCCTTTTCCGCCTCCTCCTCCTCCTCTCCTCCAGACTTCGACGACAACAAAGCAACAAAGCCTCACCGACTGTCCTCACCGCCACCCATCACTCCCGACAAAGTCATCCACGTCATCCCTATCCTCACCGTTCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACACACCCTCCCAGTCAGATTTGGCTCAGTTCAATGGATTCACTAGACTATCCGCGCCCAAGCGCGTAGACTCTGTTAACGAAGAAATCGGCGACATCCGGCGATTCATCGACGTCCGGAAAACCGATGCGTTGGCGATCCGGAGCCTGAGGGACTTAGGATCCGAAACCCGGAAACTCACCCCGAGATCTCGCTCCCACAGAAAAATCGCCGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.94

Weight (kDa)

9.86

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
AccI GTMKAC 1 cut(s) 438
AccII CGCG 2 cut(s) 425, 435
AccIII TCCGGA 2 cut(s) 486, 510
AciI CCGC 4 cut(s) 159, 216, 287, 423
AclWI GGATC 4 cut(s) 169, 502, 525, 538
AcyI GRCGYC 1 cut(s) 483
AfeI AGCGCT 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 111, 540
AgeI ACCGGT 1 cut(s) 130
AgsI TTSAA 1 cut(s) 403
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 3 cut(s) 47, 120, 147
AluBI AGCT 2 cut(s) 60, 142
AluI AGCT 2 cut(s) 60, 142
Alw26I GTCTC 2 cut(s) 75, 139
AlwI GGATC 4 cut(s) 169, 502, 525, 538
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 553
Aor13HI TCCGGA 2 cut(s) 486, 510
Aor51HI AGCGCT 1 cut(s) 191
AoxI GGCC 2 cut(s) 45, 150
AsiGI ACCGGT 1 cut(s) 130
AspLEI GCGC 3 cut(s) 192, 427, 435
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 6 cut(s) 94, 120, 263, 276, 325, 541
AvaI CYCGRG 1 cut(s) 553
AxyI CCTNAGG 1 cut(s) 518
BamHI GGATCC 1 cut(s) 530
BanII GRGCYC 1 cut(s) 128
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 3 cut(s) 49, 122, 149
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 2 cut(s) 75, 139
BfaI CTAG 1 cut(s) 414
BfoI RGCGCY 1 cut(s) 193
BglII AGATCT 1 cut(s) 557
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 4 cut(s) 49, 122, 149, 541
BmeT110I CYCGRG 1 cut(s) 553
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 515, 532
BmrFI CCNGG 4 cut(s) 49, 122, 149, 541
BmrI ACTGGG 1 cut(s) 376
BmsI GCATC 1 cut(s) 487
BmuI ACTGGG 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 541
BsaBI GATNNNNATC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 4 cut(s) 120, 121, 154, 195
BsaWI WCCGGW 3 cut(s) 130, 486, 510
BsaXI ACNNNNNCTCC 6 cut(s) 66, 96, 176, 206, 362, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 540
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 382
Bse21I CCTNAGG 1 cut(s) 518
Bse8I GATNNNNATC 1 cut(s) 30
BseAI TCCGGA 2 cut(s) 486, 510
BseBI CCWGG 3 cut(s) 49, 122, 149
BseDI CCNNGG 4 cut(s) 120, 121, 154, 195
BseGI GGATG 4 cut(s) 312, 321, 351, 465
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 2 cut(s) 111, 540
BseMII CTCAG 2 cut(s) 410, 509
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 7 cut(s) 74, 77, 211, 214, 217, 220, 225
Bsh1236I CGCG 2 cut(s) 425, 435
BshFI GGCC 2 cut(s) 47, 152
BshTI ACCGGT 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 5 cut(s) 131, 469, 487, 511, 541
BslFI GGGAC 2 cut(s) 103, 536
BslI CCNNNNNNNGG 2 cut(s) 111, 540
BsmAI GTCTC 2 cut(s) 75, 139
BsmFI GGGAC 2 cut(s) 103, 536
BsnI GGCC 2 cut(s) 47, 152
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 553
Bsp1286I GDGCHC 1 cut(s) 128
Bsp13I TCCGGA 2 cut(s) 486, 510
Bsp143I GATC 4 cut(s) 174, 507, 530, 557
BspACI CCGC 4 cut(s) 159, 216, 287, 423
BspANI GGCC 2 cut(s) 47, 152
BspCNI CTCAG 2 cut(s) 409, 510
BspEI TCCGGA 2 cut(s) 486, 510
BspFNI CGCG 2 cut(s) 425, 435
BspLI GGNNCC 2 cut(s) 515, 532
BspPI GGATC 4 cut(s) 169, 502, 525, 538
BspTNI GGTCTC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 4 cut(s) 120, 121, 154, 195
BssMI GATC 4 cut(s) 174, 507, 530, 557
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 3 cut(s) 49, 122, 149
Bst4CI ACNGT 2 cut(s) 279, 337
Bst6I CTCTTC 2 cut(s) 362, 368
BstACI GRCGYC 1 cut(s) 483
BstDEI CTNAG 3 cut(s) 396, 518, 526
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 4 cut(s) 312, 321, 351, 465
BstFNI CGCG 2 cut(s) 425, 435
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 3 cut(s) 192, 427, 435
BstKTI GATC 4 cut(s) 177, 510, 533, 560
BstMAI GTCTC 2 cut(s) 75, 139
BstMBI GATC 4 cut(s) 174, 507, 530, 557
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 3 cut(s) 49, 122, 149
BstSCI CCNGG 4 cut(s) 47, 120, 147, 539
BstUI CGCG 2 cut(s) 425, 435
BstX2I RGATCY 2 cut(s) 530, 557
BstYI RGATCY 2 cut(s) 530, 557
Bsu36I CCTNAGG 1 cut(s) 518
BsuRI GGCC 2 cut(s) 47, 152
BtgI CCRYGG 1 cut(s) 154
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 4 cut(s) 312, 321, 351, 465
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 3 cut(s) 192, 427, 435
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 151
CspAI ACCGGT 1 cut(s) 130
CviAII CATG 1 cut(s) 106
CviJI RGCY 9 cut(s) 47, 60, 126, 142, 152, 209, 268, 395, 516
CviKI_1 RGCY 9 cut(s) 47, 60, 126, 142, 152, 209, 268, 395, 516
DdeI CTNAG 3 cut(s) 396, 518, 526
DpnI GATC 4 cut(s) 176, 509, 532, 559
DpnII GATC 4 cut(s) 174, 507, 530, 557
Eam1104I CTCTTC 2 cut(s) 362, 368
EarI CTCTTC 2 cut(s) 362, 368
EciI GGCGGA 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 139
Eco47III AGCGCT 1 cut(s) 191
Eco81I CCTNAGG 1 cut(s) 518
Eco88I CYCGRG 1 cut(s) 553
EcoRII CCWGG 3 cut(s) 47, 120, 147
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 109
FaiI YATR 4 cut(s) 16, 18, 20, 107
FaqI GGGAC 2 cut(s) 103, 536
FatI CATG 1 cut(s) 105
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 4 cut(s) 299, 308, 338, 452
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 414
GlaI GCGC 3 cut(s) 191, 426, 434
GluI GCNGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 2 cut(s) 47, 152
HapII CCGG 5 cut(s) 131, 469, 487, 511, 541
HhaI GCGC 3 cut(s) 192, 427, 435
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 3 cut(s) 190, 425, 433
HinP1I GCGC 3 cut(s) 190, 425, 433
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 3 cut(s) 408, 440, 474
HpaI GTTAAC 1 cut(s) 448
HpaII CCGG 5 cut(s) 131, 469, 487, 511, 541
HphI GGTGA 6 cut(s) 94, 120, 263, 276, 325, 541
Hpy166II GTNNAC 2 cut(s) 439, 448
Hpy188I TCNGA 3 cut(s) 174, 388, 535
Hpy188III TCNNGA 4 cut(s) 239, 302, 487, 511
Hpy8I GTNNAC 2 cut(s) 439, 448
Hpy99I CGWCG 4 cut(s) 167, 185, 251, 485
HpyCH4III ACNGT 2 cut(s) 279, 337
HpyCH4IV ACGT 2 cut(s) 318, 483
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 3 cut(s) 396, 518, 526
HpySE526I ACGT 2 cut(s) 318, 483
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 3 cut(s) 190, 425, 433
Kpn2I TCCGGA 2 cut(s) 486, 510
KspAI GTTAAC 1 cut(s) 448
Kzo9I GATC 4 cut(s) 174, 507, 530, 557
LmnI GCTCC 4 cut(s) 147, 197, 513, 569
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 414
MaeII ACGT 2 cut(s) 318, 483
MaeIII GTNAC 1 cut(s) 51
MalI GATC 4 cut(s) 176, 509, 532, 559
MboI GATC 4 cut(s) 174, 507, 530, 557
MboII GAAGA 4 cut(s) 71, 349, 355, 464
MflI RGATCY 2 cut(s) 530, 557
MhlI GDGCHC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 434
MroI TCCGGA 2 cut(s) 486, 510
MseI TTAA 1 cut(s) 447
MspI CCGG 5 cut(s) 131, 469, 487, 511, 541
MspR9I CCNGG 4 cut(s) 49, 122, 149, 541
MvaI CCWGG 3 cut(s) 49, 122, 149
MvnI CGCG 2 cut(s) 425, 435
MwoI GCNNNNNNNGC 1 cut(s) 215
NciI CCSGG 1 cut(s) 541
NdeII GATC 4 cut(s) 174, 507, 530, 557
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 2 cut(s) 515, 532
NmuCI GTSAC 1 cut(s) 51
PasI CCCWGGG 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 2 cut(s) 408, 474
PflFI GACNNNGTC 1 cut(s) 308
PinAI ACCGGT 1 cut(s) 130
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp6I CCWGG 3 cut(s) 47, 120, 147
PspGI CCWGG 3 cut(s) 47, 120, 147
PspN4I GGNNCC 2 cut(s) 515, 532
PspPI GGNCC 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 2 cut(s) 530, 557
PsyI GACNNNGTC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 4 cut(s) 174, 507, 530, 557
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 4 cut(s) 49, 122, 149, 541
SduI GDGCHC 1 cut(s) 128
SetI ASST 6 cut(s) 53, 62, 69, 144, 321, 486
SfaNI GCATC 1 cut(s) 487
SsiI CCGC 4 cut(s) 159, 216, 287, 423
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 47, 120, 147, 539
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 279, 337
TaiI ACGT 2 cut(s) 321, 486
TaqI TCGA 2 cut(s) 246, 480
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 2 cut(s) 408, 474
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseFI GTSAC 1 cut(s) 51
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 466
Tth111I GACNNNGTC 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 1 cut(s) 414
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.