Rh7CG275500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013331
Physical Location & Seq
Reverse (-)
27617450 .. 27622259
4810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG275500.1

Sequence Viewer

Length: 531 bp
ATGCAAAGGCAGTCCCTGGGCTCACCGGTCTCCAAGCTCCACCAGGCCCACGGCGGCGACGACACTCTGATCCACGACGACAAGCGCTCCAAGGACATTTTAGCCTTTTCCGCCTCCTCCTCCTCTTCTCCAGACTTCGACGACAACAAAGCAACAAAGCCTCACCGACTGTCCTCACCGCCTCCCACCACTCCCGACAAAGTCATCCACGTCATCCCTATCCTCACCGTCCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACACACCCTCCCAGTCAGGTACTACCACTCCCTCTCTCCCTCACTCTTCTCATCTCAATCAACGGCTGTTGCTCTTTTCAGCTAAAATCCTCACCGTCCGGATTTTTTTGCTCTCAGATTTGGCGCAGTTCAATGGATTCACTAGACTATCCGCGCCCAAGCGCGTAGGTACGTACAATGCCGGTTTTCATTGCCCCCTTCTCAATCTTAATCCGAAACTGTTTCGATTAATTTTTGTTTGTTTTTTTTTTTGTTACAGACTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.62

Weight (kDa)

9.58

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 416, 426
AccIII TCCGGA 1 cut(s) 360
AciI CCGC 4 cut(s) 54, 111, 179, 414
AclWI GGATC 1 cut(s) 64
AfaI GTAC 3 cut(s) 283, 433, 437
AfeI AGCGCT 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 394
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 2 cut(s) 15, 42
AluBI AGCT 2 cut(s) 37, 344
AluI AGCT 2 cut(s) 37, 344
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 2 cut(s) 16, 525
Aor13HI TCCGGA 1 cut(s) 360
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 1 cut(s) 45
AseI ATTAAT 1 cut(s) 491
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 4 cut(s) 87, 388, 418, 426
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 5 cut(s) 15, 155, 168, 217, 346
BanII GRGCYC 1 cut(s) 23
BceAI ACGGC 2 cut(s) 67, 341
BciT130I CCWGG 2 cut(s) 17, 44
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 17, 44
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 17, 44
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 15, 16, 49, 90
BsaWI WCCGGW 2 cut(s) 25, 360
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 254, 274, 284, 304
Bse118I RCCGGY 2 cut(s) 25, 443
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 451
BseAI TCCGGA 1 cut(s) 360
BseBI CCWGG 2 cut(s) 17, 44
BseDI CCNNGG 4 cut(s) 15, 16, 49, 90
BseGI GGATG 3 cut(s) 204, 213, 243
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 3 cut(s) 106, 109, 112
Bsh1236I CGCG 2 cut(s) 416, 426
BshFI GGCC 1 cut(s) 47
BshTI ACCGGT 1 cut(s) 25
BsiSI CCGG 3 cut(s) 26, 361, 444
BsmAI GTCTC 1 cut(s) 34
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 360
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 4 cut(s) 54, 111, 179, 414
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 389
BspEI TCCGGA 1 cut(s) 360
BspFNI CGCG 2 cut(s) 416, 426
BspPI GGATC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 2 cut(s) 25, 443
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 2 cut(s) 25, 443
BssECI CCNNGG 4 cut(s) 15, 16, 49, 90
BssMI GATC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 17, 44
Bst4CI ACNGT 4 cut(s) 171, 229, 358, 483
Bst6I CTCTTC 4 cut(s) 130, 254, 260, 313
BstBAI YACGTR 1 cut(s) 435
BstDEI CTNAG 1 cut(s) 376
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 3 cut(s) 204, 213, 243
BstFNI CGCG 2 cut(s) 416, 426
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 4 cut(s) 87, 388, 418, 426
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 17, 44
BstSCI CCNGG 2 cut(s) 15, 42
BstSNI TACGTA 1 cut(s) 435
BstUI CGCG 2 cut(s) 416, 426
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 3 cut(s) 204, 213, 243
CaiI CAGNNNCTG 2 cut(s) 16, 525
CfoI GCGC 4 cut(s) 87, 388, 418, 426
Cfr10I RCCGGY 2 cut(s) 25, 443
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 3 cut(s) 282, 432, 436
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 7 cut(s) 21, 37, 47, 104, 160, 328, 344
CviKI_1 RGCY 7 cut(s) 21, 37, 47, 104, 160, 328, 344
CviQI GTAC 3 cut(s) 282, 432, 436
DdeI CTNAG 1 cut(s) 376
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 4 cut(s) 130, 254, 260, 313
EarI CTCTTC 4 cut(s) 130, 254, 260, 313
EciI GGCGGA 1 cut(s) 100
Eco105I TACGTA 1 cut(s) 435
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 34
Eco47III AGCGCT 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 15, 42
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 3 cut(s) 191, 200, 230
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 405
GlaI GCGC 4 cut(s) 86, 387, 417, 425
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 47
HapII CCGG 3 cut(s) 26, 361, 444
HhaI GCGC 4 cut(s) 87, 388, 418, 426
Hin6I GCGC 4 cut(s) 85, 386, 416, 424
HinP1I GCGC 4 cut(s) 85, 386, 416, 424
HinfI GANTC 2 cut(s) 399, 522
HpaII CCGG 3 cut(s) 26, 361, 444
HphI GGTGA 5 cut(s) 15, 155, 168, 217, 346
Hpy188I TCNGA 3 cut(s) 69, 379, 477
Hpy188III TCNNGA 3 cut(s) 131, 194, 361
Hpy99I CGWCG 3 cut(s) 62, 80, 143
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 4 cut(s) 171, 229, 358, 483
HpyCH4IV ACGT 2 cut(s) 210, 434
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 2 cut(s) 210, 434
HspAI GCGC 4 cut(s) 85, 386, 416, 424
Kpn2I TCCGGA 1 cut(s) 360
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 2 cut(s) 42, 92
MaeI CTAG 1 cut(s) 405
MaeII ACGT 2 cut(s) 210, 434
MaeIII GTNAC 1 cut(s) 515
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 4 cut(s) 117, 241, 247, 300
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 1 cut(s) 492
MlyI GAGTC 1 cut(s) 516
MroI TCCGGA 1 cut(s) 360
MseI TTAA 3 cut(s) 471, 491, 529
MspI CCGG 3 cut(s) 26, 361, 444
MspR9I CCNGG 2 cut(s) 17, 44
MvaI CCWGG 2 cut(s) 17, 44
MvnI CGCG 2 cut(s) 416, 426
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 69
PasI CCCWGGG 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 399
PflFI GACNNNGTC 1 cut(s) 200
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 516
Ppu21I YACGTR 1 cut(s) 435
PshBI ATTAAT 1 cut(s) 491
Psp6I CCWGG 2 cut(s) 15, 42
PspGI CCWGG 2 cut(s) 15, 42
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 2 cut(s) 16, 525
PsyI GACNNNGTC 1 cut(s) 200
RsaI GTAC 3 cut(s) 283, 433, 437
RsaNI GTAC 3 cut(s) 282, 432, 436
SaqAI TTAA 3 cut(s) 471, 491, 529
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 2 cut(s) 17, 44
SduI GDGCHC 1 cut(s) 23
SetI ASST 6 cut(s) 39, 213, 283, 346, 433, 437
SnaBI TACGTA 1 cut(s) 435
Sse9I AATT 1 cut(s) 492
SsiI CCGC 4 cut(s) 54, 111, 179, 414
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 15, 42
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 4 cut(s) 171, 229, 358, 483
TaiI ACGT 2 cut(s) 213, 437
TaqI TCGA 2 cut(s) 138, 487
TasI AATT 1 cut(s) 492
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 3 cut(s) 471, 491, 529
Tru9I TTAA 3 cut(s) 471, 491, 529
TspDTI ATGAA 1 cut(s) 440
Tth111I GACNNNGTC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 491
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.