Rh7BG252700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013331
Physical Location & Seq
Reverse (-)
22934710 .. 22935773
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG252700.1

Sequence Viewer

Length: 348 bp
ATGCAAAGGCAGTCCCTGGGCTCACCGGTCTCCAAGCTCCACCAGGCCCACGGCGGCGACGACACTCTGATCCACGACGACAAGCGCTCCAAGGACATTTTAGCCTTTTCCGTCTCCTCCTCCTCCTCCTCTTCTCCAGACTTCGACGACAACAAAGCAACAAAGCCTCACCGACTGTCCTCACCGCCTCCCACCACTCCCGACAAAGTCATCCACCTCATCCCTATCCTCACCGTTCTCTGCTTCCTCATCCTCTTCCTCTTCTCCCACACACCCTCCCAGTCAGGTACTACCACTCCCTCTCTCCCTCACTCTTCTCATCTCAATCAACGGCTGTTGCTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.54

Weight (kDa)

8.02

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35470
fragaria_vesca FvH4_5g22880
malus_domestica MD06G1025300.v1.1 MD16G1281100.v1.1
prunus_persica Prupe.5G029800_v2.0.a1
pyrus_communis pycom06g02040 pycom16g25090
rosa_chinensis RchiOBHm_Chr7g0211581
rosa_laevigata RLG00000002997
rosa_multiflora Rmu_ssc0000317.1_g000007
rosa_roxburghii Rroxscaffold_3G00247720
rosa_rugosa Rorug07G0126100 Rorug07G0126100
rosa_samantha Rh7AG258400 Rh7BG252700 Rh7CG275500 Rh7DG266000
rosa_wichuraiana Rw7G022100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 54, 185
AclWI GGATC 1 cut(s) 64
AfaI GTAC 1 cut(s) 289
AfeI AGCGCT 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 25
AjnI CCWGG 2 cut(s) 15, 42
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 2 cut(s) 34, 118
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 1 cut(s) 45
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 4 cut(s) 15, 161, 174, 223
BanII GRGCYC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 17, 44
BcoDI GTCTC 2 cut(s) 34, 118
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 17, 44
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 17, 44
BmrI ACTGGG 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 15, 16, 49, 90
BsaWI WCCGGW 1 cut(s) 25
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 260, 280, 290, 310
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 280
BseBI CCWGG 2 cut(s) 17, 44
BseDI CCNNGG 4 cut(s) 15, 16, 49, 90
BseGI GGATG 3 cut(s) 210, 219, 249
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 5 cut(s) 106, 109, 112, 115, 118
BshFI GGCC 1 cut(s) 47
BshTI ACCGGT 1 cut(s) 25
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 2 cut(s) 34, 118
BsmBI CGTCTC 1 cut(s) 118
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 2 cut(s) 54, 185
BspANI GGCC 1 cut(s) 47
BspPI GGATC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 15, 16, 49, 90
BssMI GATC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 17, 44
Bst4CI ACNGT 2 cut(s) 177, 235
Bst6I CTCTTC 4 cut(s) 136, 260, 266, 319
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 3 cut(s) 210, 219, 249
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 2 cut(s) 34, 118
BstMBI GATC 1 cut(s) 69
BstNI CCWGG 2 cut(s) 17, 44
BstSCI CCNGG 2 cut(s) 15, 42
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 49
BtsCI GGATG 3 cut(s) 210, 219, 249
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 288
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 6 cut(s) 21, 37, 47, 104, 166, 334
CviKI_1 RGCY 6 cut(s) 21, 37, 47, 104, 166, 334
CviQI GTAC 1 cut(s) 288
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 4 cut(s) 136, 260, 266, 319
EarI CTCTTC 4 cut(s) 136, 260, 266, 319
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 34
Eco47III AGCGCT 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 15, 42
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 3 cut(s) 197, 206, 236
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 55
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HpaII CCGG 1 cut(s) 26
HphI GGTGA 4 cut(s) 15, 161, 174, 223
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 137, 200
Hpy99I CGWCG 3 cut(s) 62, 80, 149
HpyCH4III ACNGT 2 cut(s) 177, 235
HpyCH4V TGCA 1 cut(s) 4
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 3 cut(s) 42, 92, 345
LpnPI CCDG 8 cut(s) 2, 29, 29, 39, 56, 150, 270, 293
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 4 cut(s) 123, 247, 253, 306
MhlI GDGCHC 1 cut(s) 23
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 17, 44
MvaI CCWGG 2 cut(s) 17, 44
NdeII GATC 1 cut(s) 69
PasI CCCWGGG 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 206
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 15, 42
PspGI CCWGG 2 cut(s) 15, 42
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 206
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 17, 44
SduI GDGCHC 1 cut(s) 23
SetI ASST 3 cut(s) 39, 219, 289
SsiI CCGC 2 cut(s) 54, 185
StyD4I CCNGG 2 cut(s) 15, 42
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 177, 235
TaqI TCGA 1 cut(s) 144
TauI GCSGC 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.