FvH4_5g24660
ERF Family

Belongs to the GST superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004737
Physical Location & Seq
Reverse (-)
16029390 .. 16031424
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24660.t1

Sequence Viewer

Length: 654 bp
ATGGGACTCAAGCTTCATGGCCTTGCTCTCTCAACATGCACTGCTCGTGTCACCACCGCCATTTACGAGAAAGGGCAGGAATTCGAGCTCATCCCTGTTAACCTTACCACCGGAGAACACAAGCAGTCAGGTTTCCTTGCCAAAAATCCCTTTGGTCAAATTCCAGCCCTAGAGGATGGTGATCTCACTCTTTTTGAGTCTAGAGCCATTGCATCATATGTTGCCGAAAAGTACAAGGACTCTGGTTCTGATCTCATCAGGCACAACAACCTCAAGGAAGCTGCACTTGTCAAGGTGTGGTCGGAGGTGGAGGCTCAGACCTTCCACCCGGTAATCTCCACCATTGTCCACCAGCATCTCATTCTCCCATTGTTTGGACAGCAGCCAGACCAAGCAGTGATCGATGCAAACCTGGAGAAGCTCAAGAACATCCTCAATGTCTATGACGCGAGGTTGAAGAGCAGCAAGTACTTGGCAGGAGATTTCTTCAGCATCGCGGATCTTAACCACTTTCCCTACCTTTTCTACTTCATGAGGAGCCCTTGGACTTCGGTGGTGAATGATCGTCCTCATGTGAAAGCCTGGTGGGAGGACATTTCTTCAAGGCCAAGCTTCAAGAAAGTAGCTGAGGGAATGGCCTTAGGTCAGAAGTAG

Protein Analysis

218

Amino Acids

24.41

Weight (kDa)

6.71

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 2 - 76 1.4e-18 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 5 - 80 2.4e-12 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 11 - 76 4.2e-12 Glutathione S-transferase, N-terminal domain
GST_C PF00043 116 - 203 2.3e-18 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 131 - 195 3.4e-07 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 136 - 207 7.6e-07 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AccII CGCG 2 cut(s) 449, 497
AciI CCGC 2 cut(s) 57, 497
AclWI GGATC 1 cut(s) 507
AcsI RAATTY 2 cut(s) 80, 159
AcuI CTGAAG 1 cut(s) 472
AfaI GTAC 2 cut(s) 233, 470
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 3 cut(s) 457, 603, 616
AjnI CCWGG 2 cut(s) 411, 581
AluBI AGCT 6 cut(s) 13, 88, 281, 421, 612, 626
AluI AGCT 6 cut(s) 13, 88, 281, 421, 612, 626
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 507
AoxI GGCC 3 cut(s) 19, 605, 636
ApeKI GCWGC 3 cut(s) 281, 382, 462
ApoI RAATTY 2 cut(s) 80, 159
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 43, 191, 568
AxyI CCTNAGG 1 cut(s) 640
BanII GRGCYC 2 cut(s) 90, 542
BauI CACGAG 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 627
BbvI GCAGC 3 cut(s) 268, 394, 474
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 413, 583
BcnI CCSGG 1 cut(s) 329
BfaI CTAG 2 cut(s) 170, 201
BisI GCNGC 3 cut(s) 282, 383, 463
BlsI GCNGC 3 cut(s) 283, 384, 464
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 3 cut(s) 329, 413, 583
BmiI GGNNCC 1 cut(s) 539
BmrFI CCNGG 3 cut(s) 329, 413, 583
BmsI GCATC 4 cut(s) 221, 364, 394, 501
BpmI CTGGAG 1 cut(s) 434
Bpu10I CCTNAGC 1 cut(s) 627
BpuEI CTTGAG 2 cut(s) 257, 407
BpuMI CCSGG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 402
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 542
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse21I CCTNAGG 1 cut(s) 640
Bse3DI GCAATG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 2 cut(s) 413, 583
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 3 cut(s) 90, 181, 429
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 329, 618
BseRI GAGGAG 1 cut(s) 550
BseXI GCAGC 3 cut(s) 268, 394, 474
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 2 cut(s) 449, 497
BshFI GGCC 3 cut(s) 21, 607, 638
BshVI ATCGAT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 111, 329
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 3 cut(s) 21, 607, 638
Bsp1286I GDGCHC 2 cut(s) 90, 542
Bsp143I GATC 5 cut(s) 181, 250, 399, 499, 562
BspACI CCGC 2 cut(s) 57, 497
BspANI GGCC 3 cut(s) 21, 607, 638
BspCNI CTCAG 2 cut(s) 328, 619
BspDI ATCGAT 1 cut(s) 402
BspFNI CGCG 2 cut(s) 449, 497
BspHI TCATGA 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 539
BspPI GGATC 1 cut(s) 507
BspQI GCTCTTC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 5 cut(s) 181, 250, 399, 499, 562
BssSI CACGAG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 542
Bst2BI CACGAG 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 413, 583
Bst6I CTCTTC 1 cut(s) 452
BstDEI CTNAG 3 cut(s) 315, 627, 640
BstF5I GGATG 3 cut(s) 90, 181, 429
BstFNI CGCG 2 cut(s) 449, 497
BstKTI GATC 5 cut(s) 184, 253, 402, 502, 565
BstMBI GATC 5 cut(s) 181, 250, 399, 499, 562
BstNI CCWGG 2 cut(s) 413, 583
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 3 cut(s) 327, 411, 581
BstUI CGCG 2 cut(s) 449, 497
BstV1I GCAGC 3 cut(s) 268, 394, 474
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
Bsu15I ATCGAT 1 cut(s) 402
Bsu36I CCTNAGG 1 cut(s) 640
BsuRI GGCC 3 cut(s) 21, 607, 638
BsuTUI ATCGAT 1 cut(s) 402
BtgZI GCGATG 1 cut(s) 478
BtsCI GGATG 3 cut(s) 90, 181, 429
BtsI GCAGTG 2 cut(s) 39, 402
BtsIMutI CAGTG 2 cut(s) 39, 402
CciI TCATGA 1 cut(s) 531
ClaI ATCGAT 1 cut(s) 402
CseI GACGC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 232, 469
CviAII CATG 4 cut(s) 17, 36, 532, 572
CviQI GTAC 2 cut(s) 232, 469
DdeI CTNAG 3 cut(s) 315, 627, 640
DpnI GATC 5 cut(s) 183, 252, 401, 501, 564
DpnII GATC 5 cut(s) 181, 250, 399, 499, 562
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 542
Eco24I GRGCYC 2 cut(s) 90, 542
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 472
Eco81I CCTNAGG 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 411, 581
EcoT14I CCWWGG 1 cut(s) 542
EcoT38I GRGCYC 2 cut(s) 90, 542
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 4 cut(s) 20, 39, 535, 575
FaiI YATR 7 cut(s) 18, 37, 217, 219, 444, 533, 573
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 16, 35, 531, 571
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 282, 383, 463
FokI GGATG 3 cut(s) 77, 188, 416
FriOI GRGCYC 2 cut(s) 90, 542
Fsp4HI GCNGC 3 cut(s) 282, 383, 463
FspBI CTAG 2 cut(s) 170, 201
GluI GCNGC 3 cut(s) 282, 383, 463
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 3 cut(s) 21, 607, 638
HapII CCGG 2 cut(s) 111, 329
HgaI GACGC 1 cut(s) 455
Hin1II CATG 4 cut(s) 20, 39, 535, 575
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HindIII AAGCTT 2 cut(s) 11, 610
HinfI GANTC 3 cut(s) 6, 197, 239
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 2 cut(s) 111, 329
HphI GGTGA 3 cut(s) 43, 191, 568
Hpy166II GTNNAC 2 cut(s) 100, 349
Hpy188I TCNGA 4 cut(s) 250, 304, 318, 648
Hpy188III TCNNGA 4 cut(s) 201, 424, 532, 616
Hpy8I GTNNAC 2 cut(s) 100, 349
HpyAV CCTTC 1 cut(s) 331
HpyCH4V TGCA 4 cut(s) 39, 212, 284, 407
HpyF3I CTNAG 3 cut(s) 315, 627, 640
Hsp92II CATG 4 cut(s) 20, 39, 535, 575
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 5 cut(s) 181, 250, 399, 499, 562
LguI GCTCTTC 1 cut(s) 452
LmnI GCTCC 1 cut(s) 537
Lsp1109I GCAGC 3 cut(s) 268, 394, 474
LweI GCATC 4 cut(s) 221, 364, 394, 501
MaeI CTAG 2 cut(s) 170, 201
MaeIII GTNAC 1 cut(s) 49
MalI GATC 5 cut(s) 183, 252, 401, 501, 564
MboI GATC 5 cut(s) 181, 250, 399, 499, 562
MboII GAAGA 3 cut(s) 469, 478, 591
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 2 cut(s) 90, 542
MluCI AATT 2 cut(s) 80, 159
MlyI GAGTC 2 cut(s) 206, 233
MmeI TCCRAC 1 cut(s) 282
MseI TTAA 2 cut(s) 99, 504
MspI CCGG 2 cut(s) 111, 329
MspR9I CCNGG 3 cut(s) 329, 413, 583
MvaI CCWGG 2 cut(s) 413, 583
MvnI CGCG 2 cut(s) 449, 497
NciI CCSGG 1 cut(s) 329
NdeI CATATG 1 cut(s) 217
NdeII GATC 5 cut(s) 181, 250, 399, 499, 562
NlaIII CATG 4 cut(s) 20, 39, 535, 575
NlaIV GGNNCC 1 cut(s) 539
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 39
PagI TCATGA 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 3 cut(s) 283, 384, 464
PleI GAGTC 2 cut(s) 205, 233
PpsI GAGTC 2 cut(s) 205, 233
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 411, 581
PspGI CCWGG 2 cut(s) 411, 581
PspN4I GGNNCC 1 cut(s) 539
PsuI RGATCY 1 cut(s) 499
RsaI GTAC 2 cut(s) 233, 470
RsaNI GTAC 2 cut(s) 232, 469
SacI GAGCTC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 2 cut(s) 99, 504
SatI GCNGC 3 cut(s) 282, 383, 463
Sau3AI GATC 5 cut(s) 181, 250, 399, 499, 562
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 2 cut(s) 206, 233
ScrFI CCNGG 3 cut(s) 329, 413, 583
SduI GDGCHC 2 cut(s) 90, 542
SfaNI GCATC 4 cut(s) 221, 364, 394, 501
SmlI CTYRAG 3 cut(s) 8, 272, 422
SmoI CTYRAG 3 cut(s) 8, 272, 422
Sse9I AATT 2 cut(s) 80, 159
SsiI CCGC 2 cut(s) 57, 497
SspMI CTAG 2 cut(s) 170, 201
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 327, 411, 581
StyI CCWWGG 1 cut(s) 542
TaqI TCGA 2 cut(s) 84, 402
TasI AATT 2 cut(s) 80, 159
TatI WGTACW 2 cut(s) 231, 468
Tru1I TTAA 2 cut(s) 99, 504
Tru9I TTAA 2 cut(s) 99, 504
TscAI CASTG 2 cut(s) 46, 402
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 3 cut(s) 281, 382, 462
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 5, 520
TspRI CASTG 2 cut(s) 46, 402
Van91I CCANNNNNTGG 1 cut(s) 374
XapI RAATTY 2 cut(s) 80, 159
XbaI TCTAGA 1 cut(s) 200
XceI RCATGY 1 cut(s) 39
XspI CTAG 2 cut(s) 170, 201
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.