Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004737

Physical Location & Seq

Genomic Coordinates Forward (+)

41895006 .. 41896381

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1303600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTGCTCAAGCTGCATGGACTTTCTGTGTCGACCTGCACAGCTCGCGTCGTCGCTTGTCTCCACGAAAAAAGCGTTGATTTCGAGCTTGTCCCCGTTGATCTTTTCGCCTGCGAAAACAAGCAGCCTGAGTTTCTTGCCAAGAATCCCTTTGGCCTGATTCCAGTATTAGAAGACGATGGCATCACACTTTTCGAATCTAGGGCAATCACAGCATATGTAGCTGAAAAATTCAAGGAAACGGGACACGATCTCGTTCGTCGCGAAAACTTCAACGAAGCTGCATTGGTGAAGGTATGGACAGAAGTGGAATCCCAACAATACAACCCTGCAATCGAACCGATTATTTTCGAGTTTTTCGCAAAGCCTGTGGTAGGAATCGAACCAGATCAAACGGTGATCGATGCAAGTTTAGAGAAGCTGAAGAAGGTGCTCGACGTGTATGAAGCCAGGTTGAGCAGCAACAAGTTCCTAGCTGGTGATTTCTACAGCCTGGCTGACCTGCACCACTTTCCGGGCACCTTCTATTTCATGAAGACGCCTTGGTCTTCGTTGGTCGACGATCGTCCTCTCGTCAAGGCGTGGTGGGAGGAGATTTCAGCTCGGCCGGCCTCCAAGAAGGTGGCTGAGGGTATGAATTTTGGTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009635 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0032991 GO:0034641 GO:0042221 GO:0042802 GO:0042803 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

218

Amino Acids

24.52

Weight (kDa)

5.03

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 76	4.2e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	5 - 80	4.8e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	11 - 76	1.1e-13	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	111 - 203	1.3e-18	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	138 - 204	5.7e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62760
fragaria_vesca	FvH4_2g25180 FvH4_2g25180 FvH4_5g24660
malus_domestica	MD03G1283000.v1.1 MD06G1012200.v1.1 MD11G1303600.v1.1
prunus_persica	Prupe.5G014900_v2.0.a1 Prupe.8G256600_v2.0.a1 Prupe.8G260300_v2.0.a1
pyrus_communis	pycom06g01020
rosa_chinensis	RchiOBHm_Chr6g0293301 RchiOBHm_Chr7g0215041
rosa_laevigata	RLG00000002697 RLG00000011960
rosa_multiflora	Rmu_ssc0000134.1_g000067 Rmu_ssc0000162.1_g000037
rosa_roxburghii	Rroxscaffold_3G00244640 Rroxscaffold_7G00174270
rosa_rugosa	Rorug06G0234400 Rorug07G0149700
rosa_samantha	Rh6AG347200 Rh6BG354500 Rh6CG361000 Rh6DG347600 Rh7AG286700 Rh7BG278200 Rh7CG306100 Rh7DG290200
rosa_wichuraiana	Rw6G030220 Rw7G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	544
Acc36I	ACCTGC	2 cut(s)	44, 510
AccB1I	GGYRCC	1 cut(s)	518
AccI	GTMKAC	2 cut(s)	32, 558
AccII	CGCG	2 cut(s)	48, 264
AcoI	YGGCCR	1 cut(s)	605
AcsI	RAATTY	2 cut(s)	230, 637
AcuI	CTGAAG	1 cut(s)	443
AcyI	GRCGYC	1 cut(s)	539
AfiI	CCNNNNNNNGG	2 cut(s)	374, 514
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	235, 274
AjiI	CACGTC	1 cut(s)	439
AjnI	CCWGG	2 cut(s)	449, 492
AluBI	AGCT	8 cut(s)	13, 44, 88, 224, 281, 421, 476, 602
AluI	AGCT	8 cut(s)	13, 44, 88, 224, 281, 421, 476, 602
Alw21I	GWGCWC	2 cut(s)	9, 435
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	3 cut(s)	154, 605, 609
ApeKI	GCWGC	4 cut(s)	13, 124, 281, 459
ApoI	RAATTY	2 cut(s)	230, 637
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	3 cut(s)	301, 409, 491
AsuII	TTCGAA	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	518
BbsI	GAAGAC	3 cut(s)	180, 540, 542
Bbv12I	GWGCWC	2 cut(s)	9, 435
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	136, 268, 471
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	451, 494
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	201, 473
BfmI	CTRYAG	1 cut(s)	487
BfuAI	ACCTGC	2 cut(s)	44, 510
BisI	GCNGC	4 cut(s)	14, 125, 282, 460
BlsI	GCNGC	4 cut(s)	15, 126, 283, 461
Bme1390I	CCNGG	3 cut(s)	451, 494, 516
BmgBI	CACGTC	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	3 cut(s)	451, 494, 516
BmsI	GCATC	2 cut(s)	192, 394
BoxI	GACNNNNGTC	1 cut(s)	564
BpiI	GAAGAC	3 cut(s)	180, 540, 542
Bpu10I	CCTNAGC	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	516
Bsa29I	ATCGAT	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 514
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	451, 494
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	542
BseLI	CCNNNNNNNGG	2 cut(s)	374, 514
BseMII	CTCAG	2 cut(s)	120, 618
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	605
BseSI	GKGCMC	1 cut(s)	521
BseX3I	CGGCCG	1 cut(s)	605
BseXI	GCAGC	3 cut(s)	136, 268, 471
BsgI	GTGCAG	2 cut(s)	22, 488
Bsh1236I	CGCG	2 cut(s)	48, 264
Bsh1285I	CGRYCG	2 cut(s)	565, 608
BshFI	GGCC	3 cut(s)	156, 607, 611
BshNI	GGYRCC	1 cut(s)	518
BshVI	ATCGAT	1 cut(s)	402
BsiEI	CGRYCG	2 cut(s)	565, 608
BsiHKAI	GWGCWC	2 cut(s)	9, 435
BsiSI	CCGG	2 cut(s)	515, 608
BslFI	GGGAC	2 cut(s)	77, 258
BslI	CCNNNNNNNGG	2 cut(s)	374, 514
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	77, 258
BsnI	GGCC	3 cut(s)	156, 607, 611
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	3 cut(s)	9, 435, 521
Bsp143I	GATC	5 cut(s)	100, 250, 388, 399, 562
Bsp68I	TCGCGA	1 cut(s)	264
BspANI	GGCC	3 cut(s)	156, 607, 611
BspCNI	CTCAG	2 cut(s)	121, 619
BspDI	ATCGAT	1 cut(s)	402
BspFNI	CGCG	2 cut(s)	48, 264
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	520
BspMI	ACCTGC	2 cut(s)	44, 510
BspT104I	TTCGAA	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	518
BsrFI	RCCGGY	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	5 cut(s)	100, 250, 388, 399, 562
BssNI	GRCGYC	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	542
Bst2UI	CCWGG	2 cut(s)	451, 494
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	46, 112, 609
BstDEI	CTNAG	2 cut(s)	129, 627
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstFNI	CGCG	2 cut(s)	48, 264
BstKTI	GATC	5 cut(s)	103, 253, 391, 402, 565
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	5 cut(s)	100, 250, 388, 399, 562
BstMCI	CGRYCG	2 cut(s)	565, 608
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 45, 212, 221, 608
BstNI	CCWGG	2 cut(s)	451, 494
BstPAI	GACNNNNGTC	1 cut(s)	564
BstSCI	CCNGG	3 cut(s)	449, 492, 514
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	521
BstUI	CGCG	2 cut(s)	48, 264
BstV1I	GCAGC	3 cut(s)	136, 268, 471
BstV2I	GAAGAC	3 cut(s)	180, 540, 542
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstZI	CGGCCG	1 cut(s)	605
Bsu15I	ATCGAT	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	156, 607, 611
BsuTUI	ATCGAT	1 cut(s)	402
BtrI	CACGTC	1 cut(s)	439
BtuMI	TCGCGA	1 cut(s)	264
BveI	ACCTGC	2 cut(s)	44, 510
Cac8I	GCNNGC	3 cut(s)	46, 112, 609
CciI	TCATGA	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	607
ClaI	ATCGAT	1 cut(s)	402
CseI	GACGC	2 cut(s)	37, 547
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	2 cut(s)	17, 532
DdeI	CTNAG	2 cut(s)	129, 627
DpnI	GATC	5 cut(s)	102, 252, 390, 401, 564
DpnII	GATC	5 cut(s)	100, 250, 388, 399, 562
DrdI	GACNNNNNNGTC	1 cut(s)	544
DseDI	GACNNNNNNGTC	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	605
EagI	CGGCCG	1 cut(s)	605
EclXI	CGGCCG	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	542
Eco52I	CGGCCG	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	443
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	449, 492
EcoT14I	CCWWGG	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	2 cut(s)	20, 535
FaiI	YATR	7 cut(s)	18, 217, 219, 298, 444, 533, 635
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	77, 258
FatI	CATG	2 cut(s)	16, 531
FauNDI	CATATG	1 cut(s)	217
FblI	GTMKAC	2 cut(s)	32, 558
Fnu4HI	GCNGC	4 cut(s)	14, 125, 282, 460
FseI	GGCCGGCC	1 cut(s)	611
Fsp4HI	GCNGC	4 cut(s)	14, 125, 282, 460
FspBI	CTAG	2 cut(s)	201, 473
GluI	GCNGC	4 cut(s)	14, 125, 282, 460
HaeIII	GGCC	3 cut(s)	156, 607, 611
HapII	CCGG	2 cut(s)	515, 608
HgaI	GACGC	2 cut(s)	37, 547
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	20, 535
HincII	GTYRAC	2 cut(s)	33, 559
HindII	GTYRAC	2 cut(s)	33, 559
HinfI	GANTC	5 cut(s)	145, 160, 197, 311, 378
HpaII	CCGG	2 cut(s)	515, 608
HphI	GGTGA	3 cut(s)	301, 409, 491
Hpy166II	GTNNAC	2 cut(s)	33, 559
Hpy188III	TCNNGA	2 cut(s)	263, 532
Hpy8I	GTNNAC	2 cut(s)	33, 559
Hpy99I	CGWCG	5 cut(s)	53, 56, 264, 440, 563
HpyAV	CCTTC	4 cut(s)	286, 421, 532, 613
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	6 cut(s)	16, 39, 284, 332, 407, 505
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 45, 212, 221, 608
HpyF3I	CTNAG	2 cut(s)	129, 627
HpySE526I	ACGT	1 cut(s)	438
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	20, 535
KroI	GCCGGC	1 cut(s)	607
KroNI	GCCGGC	1 cut(s)	609
Kzo9I	GATC	5 cut(s)	100, 250, 388, 399, 562
Lsp1109I	GCAGC	3 cut(s)	136, 268, 471
LweI	GCATC	2 cut(s)	192, 394
MaeI	CTAG	2 cut(s)	201, 473
MaeII	ACGT	1 cut(s)	438
MalI	GATC	5 cut(s)	102, 252, 390, 401, 564
MboI	GATC	5 cut(s)	100, 250, 388, 399, 562
MboII	GAAGA	4 cut(s)	185, 436, 540, 547
MhlI	GDGCHC	3 cut(s)	9, 435, 521
MluCI	AATT	2 cut(s)	230, 637
MnlI	CCTC	4 cut(s)	579, 583, 622, 622
MroNI	GCCGGC	1 cut(s)	607
MspI	CCGG	2 cut(s)	515, 608
MspR9I	CCNGG	3 cut(s)	451, 494, 516
MvaI	CCWGG	2 cut(s)	451, 494
MvnI	CGCG	2 cut(s)	48, 264
MwoI	GCNNNNNNNGC	5 cut(s)	13, 45, 212, 221, 608
NaeI	GCCGGC	1 cut(s)	609
NciI	CCSGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	5 cut(s)	100, 250, 388, 399, 562
NgoMIV	GCCGGC	1 cut(s)	607
NlaIII	CATG	2 cut(s)	20, 535
NlaIV	GGNNCC	1 cut(s)	520
NmeAIII	GCCGAG	1 cut(s)	583
NruI	TCGCGA	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	195
PagI	TCATGA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 261
PdiI	GCCGGC	1 cut(s)	609
PfeI	GAWTC	5 cut(s)	145, 160, 197, 311, 378
PkrI	GCNGC	4 cut(s)	15, 126, 283, 461
Ple19I	CGATCG	1 cut(s)	565
PshAI	GACNNNNGTC	1 cut(s)	564
Psp6I	CCWGG	2 cut(s)	449, 492
PspGI	CCWGG	2 cut(s)	449, 492
PspN4I	GGNNCC	1 cut(s)	520
PvuI	CGATCG	1 cut(s)	565
RigI	GGCCGGCC	1 cut(s)	611
RruI	TCGCGA	1 cut(s)	264
SalI	GTCGAC	2 cut(s)	31, 557
SatI	GCNGC	4 cut(s)	14, 125, 282, 460
Sau3AI	GATC	5 cut(s)	100, 250, 388, 399, 562
ScrFI	CCNGG	3 cut(s)	451, 494, 516
SduI	GDGCHC	3 cut(s)	9, 435, 521
SfaNI	GCATC	2 cut(s)	192, 394
SfcI	CTRYAG	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	230, 637
SspMI	CTAG	2 cut(s)	201, 473
StyD4I	CCNGG	3 cut(s)	449, 492, 514
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	9 cut(s)	32, 84, 195, 336, 351, 381, 402, 435, 558
TasI	AATT	2 cut(s)	230, 637
TfiI	GAWTC	5 cut(s)	145, 160, 197, 311, 378
TseI	GCWGC	4 cut(s)	13, 124, 281, 459
TspDTI	ATGAA	4 cut(s)	459, 520, 548, 650
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	2 cut(s)	230, 637
XmiI	GTMKAC	2 cut(s)	32, 558
XspI	CTAG	2 cut(s)	201, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.