Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000134.1

Orthogroup ID

OG0004737

Physical Location & Seq

Genomic Coordinates Reverse (-)

265922 .. 267173

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000134.1_g000067.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggcactcaagcttcatggcctggctttctcaacatgcacagctcgtgccgcaaccgccatttacgagaaaggacagcaattcgagcttgtccctgtcaaccttactgcaggagaacacaagcagccaggtttcctcgccaaaaatccctttggccaaattccagccctagaggatggtgatctcactctttttgagtctagagcaattgcaacatatgtggctgaaaaatacaaggactcgggttccgatctgatcaggcaccaaaacctcaaggaagctgcacttgtcaaggtgtggtcggaggtggagtcccagaccttccaccccgtaatctccgccattgtctaccagtttctcattgcgccattgttcggacagcagacagaccaagccgtgatcgacgcaaacctggagaagctcaagaacatcctcgatgtctacgagtcaaggttgaacagcagcaagtacttggcaggagatttcttcagccttgcagatcttaaccactgtccctaccttttctacttcatgaggagtccgtggacttcggtggtgaatgaacgtcctcatgtgaaagcctggtgggaggacatttcttcaaggccaagcttcaagaaagtagccgagggaatgacctttggtcagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009635 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0032991 GO:0034641 GO:0042221 GO:0042802 GO:0042803 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

217

Amino Acids

24.42

Weight (kDa)

6.31

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62760
fragaria_vesca	FvH4_2g25180 FvH4_2g25180 FvH4_5g24660
malus_domestica	MD03G1283000.v1.1 MD06G1012200.v1.1 MD11G1303600.v1.1
prunus_persica	Prupe.5G014900_v2.0.a1 Prupe.8G256600_v2.0.a1 Prupe.8G260300_v2.0.a1
pyrus_communis	pycom06g01020
rosa_chinensis	RchiOBHm_Chr6g0293301 RchiOBHm_Chr7g0215041
rosa_laevigata	RLG00000002697 RLG00000011960
rosa_multiflora	Rmu_ssc0000134.1_g000067 Rmu_ssc0000162.1_g000037
rosa_roxburghii	Rroxscaffold_3G00244640 Rroxscaffold_7G00174270
rosa_rugosa	Rorug06G0234400 Rorug07G0149700
rosa_samantha	Rh6AG347200 Rh6BG354500 Rh6CG361000 Rh6DG347600 Rh7AG286700 Rh7BG278200 Rh7CG306100 Rh7DG290200
rosa_wichuraiana	Rw6G030220 Rw7G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	2 cut(s)	348, 441
AciI	CCGC	3 cut(s)	51, 57, 339
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	457, 603, 616
AhdI	GACNNNNNGTC	1 cut(s)	642
AjnI	CCWGG	4 cut(s)	21, 127, 411, 581
AluBI	AGCT	6 cut(s)	13, 44, 88, 281, 421, 612
AluI	AGCT	6 cut(s)	13, 44, 88, 281, 421, 612
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	3 cut(s)	19, 154, 605
ApeKI	GCWGC	3 cut(s)	124, 281, 462
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	191, 568
AvaI	CYCGRG	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	136, 268, 474
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	4 cut(s)	23, 129, 413, 583
BclI	TGATCA	1 cut(s)	255
BfaI	CTAG	2 cut(s)	170, 201
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	4 cut(s)	51, 125, 282, 463
BlsI	GCNGC	4 cut(s)	52, 126, 283, 464
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	4 cut(s)	23, 129, 413, 583
BmeRI	GACNNNNNGTC	1 cut(s)	642
BmeT110I	CYCGRG	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	247, 263
BmrFI	CCNGG	4 cut(s)	23, 129, 413, 583
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	2 cut(s)	257, 407
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	542, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	4 cut(s)	23, 129, 413, 583
BseDI	CCNNGG	2 cut(s)	542, 627
BseGI	GGATG	2 cut(s)	181, 429
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	3 cut(s)	136, 268, 474
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	21, 156, 607
BshNI	GGYRCC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	241
BslFI	GGGAC	3 cut(s)	77, 298, 498
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmFI	GGGAC	3 cut(s)	77, 298, 498
BsnI	GGCC	3 cut(s)	21, 156, 607
BsoBI	CYCGRG	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	181, 250, 255, 399, 499
BspACI	CCGC	3 cut(s)	51, 57, 339
BspANI	GGCC	3 cut(s)	21, 156, 607
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	247, 263
BspMAI	CTGCAG	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	542, 627
BssMI	GATC	5 cut(s)	181, 250, 255, 399, 499
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	4 cut(s)	23, 129, 413, 583
Bst4CI	ACNGT	1 cut(s)	512
BstDSI	CCRYGG	1 cut(s)	542
BstF5I	GGATG	2 cut(s)	181, 429
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	5 cut(s)	184, 253, 258, 402, 502
BstMBI	GATC	5 cut(s)	181, 250, 255, 399, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 56, 85
BstNI	CCWGG	4 cut(s)	23, 129, 413, 583
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	4 cut(s)	21, 127, 411, 581
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	136, 268, 474
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	21, 156, 607
BtgI	CCRYGG	1 cut(s)	542
BtsCI	GGATG	2 cut(s)	181, 429
BtsIMutI	CAGTG	1 cut(s)	508
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	1 cut(s)	367
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	469
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	4 cut(s)	17, 36, 532, 572
CviQI	GTAC	1 cut(s)	469
DpnI	GATC	5 cut(s)	183, 252, 257, 401, 501
DpnII	GATC	5 cut(s)	181, 250, 255, 399, 499
DriI	GACNNNNNGTC	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	154
Eam1105I	GACNNNNNGTC	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	241
EcoRII	CCWGG	4 cut(s)	21, 127, 411, 581
FaeI	CATG	4 cut(s)	20, 39, 535, 575
FaiI	YATR	6 cut(s)	18, 37, 217, 219, 533, 573
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	3 cut(s)	77, 298, 498
FatI	CATG	4 cut(s)	16, 35, 531, 571
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	255
FblI	GTMKAC	2 cut(s)	348, 441
Fnu4HI	GCNGC	4 cut(s)	51, 125, 282, 463
FokI	GGATG	2 cut(s)	188, 416
Fsp4HI	GCNGC	4 cut(s)	51, 125, 282, 463
FspBI	CTAG	2 cut(s)	170, 201
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	4 cut(s)	51, 125, 282, 463
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	3 cut(s)	21, 156, 607
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	4 cut(s)	20, 39, 535, 575
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	2 cut(s)	11, 610
HinfI	GANTC	5 cut(s)	197, 239, 311, 446, 538
HphI	GGTGA	2 cut(s)	191, 568
Hpy166II	GTNNAC	4 cut(s)	100, 349, 442, 546
Hpy188I	TCNGA	5 cut(s)	250, 255, 304, 377, 648
Hpy188III	TCNNGA	4 cut(s)	201, 424, 532, 616
Hpy8I	GTNNAC	4 cut(s)	100, 349, 442, 546
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	5 cut(s)	39, 110, 212, 284, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 56, 85
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	4 cut(s)	20, 39, 535, 575
HspAI	GCGC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	5 cut(s)	181, 250, 255, 399, 499
Lsp1109I	GCAGC	3 cut(s)	136, 268, 474
MaeI	CTAG	2 cut(s)	170, 201
MaeII	ACGT	1 cut(s)	565
MalI	GATC	5 cut(s)	183, 252, 257, 401, 501
MboI	GATC	5 cut(s)	181, 250, 255, 399, 499
MboII	GAAGA	2 cut(s)	478, 591
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	499
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	3 cut(s)	80, 159, 207
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	5 cut(s)	206, 233, 320, 455, 547
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	9 cut(s)	146, 166, 281, 298, 443, 528, 579, 583, 622
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	156
MspR9I	CCNGG	4 cut(s)	23, 129, 413, 583
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	4 cut(s)	23, 129, 413, 583
MwoI	GCNNNNNNNGC	3 cut(s)	50, 56, 85
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	5 cut(s)	181, 250, 255, 399, 499
NlaIII	CATG	4 cut(s)	20, 39, 535, 575
NlaIV	GGNNCC	2 cut(s)	247, 263
NmeAIII	GCCGAG	1 cut(s)	652
NspI	RCATGY	1 cut(s)	39
PagI	TCATGA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PkrI	GCNGC	4 cut(s)	52, 126, 283, 464
PleI	GAGTC	5 cut(s)	205, 233, 319, 454, 546
PpsI	GAGTC	5 cut(s)	205, 233, 319, 454, 546
Psp6I	CCWGG	4 cut(s)	21, 127, 411, 581
PspGI	CCWGG	4 cut(s)	21, 127, 411, 581
PspN4I	GGNNCC	2 cut(s)	247, 263
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	4 cut(s)	51, 125, 282, 463
Sau3AI	GATC	5 cut(s)	181, 250, 255, 399, 499
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	5 cut(s)	206, 233, 320, 455, 547
ScrFI	CCNGG	4 cut(s)	23, 129, 413, 583
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	3 cut(s)	8, 272, 422
SmoI	CTYRAG	3 cut(s)	8, 272, 422
Sse9I	AATT	3 cut(s)	80, 159, 207
SsiI	CCGC	3 cut(s)	51, 57, 339
SspMI	CTAG	2 cut(s)	170, 201
StyD4I	CCNGG	4 cut(s)	21, 127, 411, 581
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	3 cut(s)	84, 402, 435
TasI	AATT	3 cut(s)	80, 159, 207
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	515
TseI	GCWGC	3 cut(s)	124, 281, 462
TspDTI	ATGAA	3 cut(s)	5, 520, 576
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	1 cut(s)	515
XapI	RAATTY	1 cut(s)	159
XbaI	TCTAGA	1 cut(s)	200
XceI	RCATGY	1 cut(s)	39
XmiI	GTMKAC	2 cut(s)	348, 441
XspI	CTAG	2 cut(s)	170, 201
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.