Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004737

Physical Location & Seq

Genomic Coordinates Forward (+)

37483443 .. 37484803

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCACTCAAGCTTCATGGCCTGGCTCTCTCAACATGCACAGCTCGTGCCGCAACCGCCATTTACGAGAAAGAACAGCAATTCGAGCTTGTCCCTGTCAACCTTACTGCAGGAGAACACAAGCAGCCAGGTTTCCTCGCCAAAAATCCCTTTGGCCAAATTCCAGCCCTAGAGGATGGTGATCTCACTCTTTTTGAGTCTAGAGCAATTGCAACGTATGTGGCTGAAAAATACAAGGACTCGGGTTCCGATCTGATCAGGCACCAAAACCTCAAGGAAGCCGCACTTGTCAAGGTGTGGTCAGAGGTGGAGTCCCAGACCTTCCACCCTGTAATCTCCGCCATTGTCTACCAGTTTCTCATTGCGCCATTGTTCGGACAGCAGCCAGACCAAGCCGTGATCGATGCAAACCTGGAGAAGCTCAAGAAGATCCTTGATGTCTACGAGTCGAGGTTGACGAGCAGCAAGTACTTGGCAGGAGATTTCTTCAGCCTTGCAGATCTTAACCACTTGCCATACCTTTTCTACTTCATGAGGAGTCCGTGGACTTCGGTGGTGAATGAACGTCCTCATGTGAAAGCCTGGTGGGAGGACATTTCTTCAAGGCCAAGCTTCAAGAAAGTGGCCGAGGGAATGACCTTAGGTCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009635 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0032991 GO:0034641 GO:0042221 GO:0042802 GO:0042803 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

217

Amino Acids

24.43

Weight (kDa)

6.31

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	2 - 76	1.2e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	5 - 80	1.4e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	11 - 76	3.4e-11	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	112 - 203	6.8e-18	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	131 - 195	2.4e-06	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	137 - 207	1.4e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62760
fragaria_vesca	FvH4_2g25180 FvH4_2g25180 FvH4_5g24660
malus_domestica	MD03G1283000.v1.1 MD06G1012200.v1.1 MD11G1303600.v1.1
prunus_persica	Prupe.5G014900_v2.0.a1 Prupe.8G256600_v2.0.a1 Prupe.8G260300_v2.0.a1
pyrus_communis	pycom06g01020
rosa_chinensis	RchiOBHm_Chr6g0293301 RchiOBHm_Chr7g0215041
rosa_laevigata	RLG00000002697 RLG00000011960
rosa_multiflora	Rmu_ssc0000134.1_g000067 Rmu_ssc0000162.1_g000037
rosa_roxburghii	Rroxscaffold_3G00244640 Rroxscaffold_7G00174270
rosa_rugosa	Rorug06G0234400 Rorug07G0149700
rosa_samantha	Rh6AG347200 Rh6BG354500 Rh6CG361000 Rh6DG347600 Rh7AG286700 Rh7BG278200 Rh7CG306100 Rh7DG290200
rosa_wichuraiana	Rw6G030220 Rw7G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	2 cut(s)	348, 441
AciI	CCGC	4 cut(s)	51, 57, 282, 339
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	2 cut(s)	154, 624
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	472
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	603, 616
AhdI	GACNNNNNGTC	1 cut(s)	642
AjnI	CCWGG	4 cut(s)	21, 127, 411, 581
AluBI	AGCT	5 cut(s)	13, 44, 88, 421, 612
AluI	AGCT	5 cut(s)	13, 44, 88, 421, 612
AlwI	GGATC	1 cut(s)	424
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	4 cut(s)	19, 154, 605, 624
ApeKI	GCWGC	3 cut(s)	124, 382, 462
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	191, 568
AvaI	CYCGRG	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	136, 394, 474
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	4 cut(s)	23, 129, 413, 583
BclI	TGATCA	1 cut(s)	255
BfaI	CTAG	2 cut(s)	170, 201
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	5 cut(s)	51, 125, 282, 383, 463
BlsI	GCNGC	5 cut(s)	52, 126, 283, 384, 464
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	4 cut(s)	23, 129, 413, 583
BmeRI	GACNNNNNGTC	1 cut(s)	642
BmeT110I	CYCGRG	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	247, 263
BmrFI	CCNGG	4 cut(s)	23, 129, 413, 583
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	2 cut(s)	257, 407
Bsa29I	ATCGAT	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	542, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	352
Bse21I	CCTNAGG	1 cut(s)	640
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	4 cut(s)	23, 129, 413, 583
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	542, 627
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	3 cut(s)	136, 394, 474
BshFI	GGCC	4 cut(s)	21, 156, 607, 626
BshNI	GGYRCC	1 cut(s)	261
BshVI	ATCGAT	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	241
BslFI	GGGAC	2 cut(s)	77, 298
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	77, 298
BsnI	GGCC	4 cut(s)	21, 156, 607, 626
BsoBI	CYCGRG	1 cut(s)	241
Bsp143I	GATC	6 cut(s)	181, 250, 255, 399, 429, 499
BspACI	CCGC	4 cut(s)	51, 57, 282, 339
BspANI	GGCC	4 cut(s)	21, 156, 607, 626
BspDI	ATCGAT	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	247, 263
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	542, 627
BssMI	GATC	6 cut(s)	181, 250, 255, 399, 429, 499
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	4 cut(s)	23, 129, 413, 583
BstDEI	CTNAG	1 cut(s)	640
BstDSI	CCRYGG	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	6 cut(s)	184, 253, 258, 402, 432, 502
BstMBI	GATC	6 cut(s)	181, 250, 255, 399, 429, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 56, 85
BstNI	CCWGG	4 cut(s)	23, 129, 413, 583
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	4 cut(s)	21, 127, 411, 581
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	136, 394, 474
BstX2I	RGATCY	2 cut(s)	429, 499
BstYI	RGATCY	2 cut(s)	429, 499
Bsu15I	ATCGAT	1 cut(s)	402
Bsu36I	CCTNAGG	1 cut(s)	640
BsuRI	GGCC	4 cut(s)	21, 156, 607, 626
BsuTUI	ATCGAT	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	181
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	1 cut(s)	367
ClaI	ATCGAT	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	469
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	4 cut(s)	17, 36, 532, 572
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	640
DpnI	GATC	6 cut(s)	183, 252, 257, 401, 431, 501
DpnII	GATC	6 cut(s)	181, 250, 255, 399, 429, 499
DriI	GACNNNNNGTC	1 cut(s)	642
EaeI	YGGCCR	2 cut(s)	154, 624
Eam1105I	GACNNNNNGTC	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	472
Eco81I	CCTNAGG	1 cut(s)	640
Eco88I	CYCGRG	1 cut(s)	241
EcoRII	CCWGG	4 cut(s)	21, 127, 411, 581
FaeI	CATG	4 cut(s)	20, 39, 535, 575
FaiI	YATR	6 cut(s)	18, 37, 219, 517, 533, 573
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	77, 298
FatI	CATG	4 cut(s)	16, 35, 531, 571
FbaI	TGATCA	1 cut(s)	255
FblI	GTMKAC	2 cut(s)	348, 441
Fnu4HI	GCNGC	5 cut(s)	51, 125, 282, 383, 463
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	5 cut(s)	51, 125, 282, 383, 463
FspBI	CTAG	2 cut(s)	170, 201
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	5 cut(s)	51, 125, 282, 383, 463
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	4 cut(s)	21, 156, 607, 626
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	4 cut(s)	20, 39, 535, 575
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	2 cut(s)	100, 456
HindII	GTYRAC	2 cut(s)	100, 456
HindIII	AAGCTT	2 cut(s)	11, 610
HinfI	GANTC	5 cut(s)	197, 239, 311, 446, 538
HphI	GGTGA	2 cut(s)	191, 568
Hpy166II	GTNNAC	5 cut(s)	100, 349, 442, 456, 546
Hpy188I	TCNGA	5 cut(s)	250, 255, 304, 377, 648
Hpy188III	TCNNGA	4 cut(s)	201, 424, 532, 616
Hpy8I	GTNNAC	5 cut(s)	100, 349, 442, 456, 546
HpyAV	CCTTC	1 cut(s)	331
HpyCH4IV	ACGT	2 cut(s)	215, 565
HpyCH4V	TGCA	5 cut(s)	39, 110, 212, 407, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 56, 85
HpyF3I	CTNAG	1 cut(s)	640
HpySE526I	ACGT	2 cut(s)	215, 565
Hsp92II	CATG	4 cut(s)	20, 39, 535, 575
HspAI	GCGC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	6 cut(s)	181, 250, 255, 399, 429, 499
Lsp1109I	GCAGC	3 cut(s)	136, 394, 474
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	170, 201
MaeII	ACGT	2 cut(s)	215, 565
MalI	GATC	6 cut(s)	183, 252, 257, 401, 431, 501
MboI	GATC	6 cut(s)	181, 250, 255, 399, 429, 499
MboII	GAAGA	3 cut(s)	439, 478, 591
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	2 cut(s)	429, 499
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	3 cut(s)	80, 159, 207
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	5 cut(s)	206, 233, 320, 455, 547
MnlI	CCTC	9 cut(s)	146, 166, 281, 298, 444, 528, 579, 583, 622
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	156
MspR9I	CCNGG	4 cut(s)	23, 129, 413, 583
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	4 cut(s)	23, 129, 413, 583
MwoI	GCNNNNNNNGC	3 cut(s)	50, 56, 85
NdeII	GATC	6 cut(s)	181, 250, 255, 399, 429, 499
NlaIII	CATG	4 cut(s)	20, 39, 535, 575
NlaIV	GGNNCC	2 cut(s)	247, 263
NmeAIII	GCCGAG	1 cut(s)	652
NspI	RCATGY	1 cut(s)	39
PagI	TCATGA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	455
PkrI	GCNGC	5 cut(s)	52, 126, 283, 384, 464
PleI	GAGTC	5 cut(s)	205, 233, 319, 454, 546
PpsI	GAGTC	5 cut(s)	205, 233, 319, 454, 546
Psp6I	CCWGG	4 cut(s)	21, 127, 411, 581
PspGI	CCWGG	4 cut(s)	21, 127, 411, 581
PspN4I	GGNNCC	2 cut(s)	247, 263
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	2 cut(s)	429, 499
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	5 cut(s)	51, 125, 282, 383, 463
Sau3AI	GATC	6 cut(s)	181, 250, 255, 399, 429, 499
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	5 cut(s)	206, 233, 320, 455, 547
ScrFI	CCNGG	4 cut(s)	23, 129, 413, 583
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	3 cut(s)	8, 272, 422
SmoI	CTYRAG	3 cut(s)	8, 272, 422
Sse9I	AATT	3 cut(s)	80, 159, 207
SsiI	CCGC	4 cut(s)	51, 57, 282, 339
SspMI	CTAG	2 cut(s)	170, 201
StyD4I	CCNGG	4 cut(s)	21, 127, 411, 581
TaiI	ACGT	2 cut(s)	218, 568
TaqI	TCGA	3 cut(s)	84, 402, 449
TasI	AATT	3 cut(s)	80, 159, 207
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	2 cut(s)	53, 284
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TseI	GCWGC	3 cut(s)	124, 382, 462
TspDTI	ATGAA	3 cut(s)	5, 520, 576
TspGWI	ACGGA	1 cut(s)	531
XapI	RAATTY	1 cut(s)	159
XbaI	TCTAGA	1 cut(s)	200
XceI	RCATGY	1 cut(s)	39
XmiI	GTMKAC	2 cut(s)	348, 441
XspI	CTAG	2 cut(s)	170, 201
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.