Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004737

Physical Location & Seq

Genomic Coordinates Reverse (-)

14094901 .. 14097028

Gene Structure 2128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTGCTCAAGCTGCATGGACTTTCTGTGTCGACCAACACAGCTCGCGTAGTGGCTTGTCTCCATGAAAAAGATGTCGATTTCGAGCTTGTCCCGGTTGATCTTTTTGCCCGTGGAAACAAGGAGCCTTCTTTTCTTGCCAAGAATCCCTTTGGCCAGATTCCAGTATTAGAAGATGGTGACATCACACTTTTTGAATCTAGGGCAATCACATCATATGTAGCTGAAAAATTCAAGGAAACCGGAACTGATCTCGTAAGGCACAAAAGCTTTGATGAAGCTGCATTGGTGAAGGTATGGACAGAAGTTGAATCCCAACAATACCACCCAGCAATCTGTCCCATTATATACGAGTTTTTTGGAAAACCAGTACAAGGCTTGGAACCAGACCAGGCAGTGATTGATGCAAATTTGGAGAAGCTAGAGAAGGTGCTCGACGTTTACGAGGCCAAGCTGAGCAGCACCAAGTACCTTGCTGGTGATTTCTATAGCCTAGCAGATCTTCACCATTTCCCTTACACTTATTATTTCATGAAGACTACTTGGGGCTCAGTGATCAGTGATCGTCCTCATGTTAAGGCCTGGTGGGATGACATTACGTCTAGGCCTGCTTTGAAGAAAGTTGCTGAGGACCACCACTTTGAACTACCAGCACTCAAGCTTATACCGTTGTCGAGTAGTAAGGCCAAGATCGACGGCGAGTGTGATGGTGTTGATCATCGTGAATTAGCTGAACTAAGCGAAGTTCTGGATGTGTTCGTACGAGGCGCAGCTGGGAAGTTTCAAGTACCTGGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009635 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0032991 GO:0034641 GO:0042221 GO:0042802 GO:0042803 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

267

Amino Acids

29.84

Weight (kDa)

5.29

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 76	3e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	5 - 80	4.1e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	11 - 76	2.4e-12	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	109 - 203	1.6e-18	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	138 - 207	1.7e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62760
fragaria_vesca	FvH4_2g25180 FvH4_2g25180 FvH4_5g24660
malus_domestica	MD03G1283000.v1.1 MD06G1012200.v1.1 MD11G1303600.v1.1
prunus_persica	Prupe.5G014900_v2.0.a1 Prupe.8G256600_v2.0.a1 Prupe.8G260300_v2.0.a1
pyrus_communis	pycom06g01020
rosa_chinensis	RchiOBHm_Chr6g0293301 RchiOBHm_Chr7g0215041
rosa_laevigata	RLG00000002697 RLG00000011960
rosa_multiflora	Rmu_ssc0000134.1_g000067 Rmu_ssc0000162.1_g000037
rosa_roxburghii	Rroxscaffold_3G00244640 Rroxscaffold_7G00174270
rosa_rugosa	Rorug06G0234400 Rorug07G0149700
rosa_samantha	Rh6AG347200 Rh6BG354500 Rh6CG361000 Rh6DG347600 Rh7AG286700 Rh7BG278200 Rh7CG306100 Rh7DG290200
rosa_wichuraiana	Rw6G030220 Rw7G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	230, 409
AfaI	GTAC	4 cut(s)	372, 470, 762, 789
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	6 cut(s)	197, 235, 311, 616, 644, 785
AhdI	GACNNNNNGTC	1 cut(s)	598
AjnI	CCWGG	3 cut(s)	390, 581, 790
Alw21I	GWGCWC	2 cut(s)	9, 435
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	5 cut(s)	154, 447, 579, 605, 684
ApeKI	GCWGC	4 cut(s)	13, 281, 459, 770
ApoI	RAATTY	2 cut(s)	230, 409
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
AspLEI	GCGC	1 cut(s)	770
AspS9I	GGNCC	1 cut(s)	631
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	4 cut(s)	191, 301, 491, 497
AvaII	GGWCC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	9, 435
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	268, 471, 782
BccI	CCATC	2 cut(s)	170, 701
BceAI	ACGGC	1 cut(s)	712
BciT130I	CCWGG	3 cut(s)	392, 583, 792
BclI	TGATCA	2 cut(s)	555, 715
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	4 cut(s)	201, 422, 494, 603
BfmI	CTRYAG	1 cut(s)	487
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	4 cut(s)	14, 282, 460, 771
BlpI	GCTNAGC	1 cut(s)	455
BlsI	GCNGC	4 cut(s)	15, 283, 461, 772
Bme1390I	CCNGG	4 cut(s)	95, 392, 583, 792
Bme18I	GGWCC	1 cut(s)	631
BmeRI	GACNNNNNGTC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	2 cut(s)	126, 384
BmrFI	CCNGG	4 cut(s)	95, 392, 583, 792
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	641
BpuMI	CCSGG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	164, 368
BseBI	CCWGG	3 cut(s)	392, 583, 792
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	595, 757
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	3 cut(s)	446, 564, 618
BseNI	ACTGG	2 cut(s)	164, 368
BseXI	GCAGC	3 cut(s)	268, 471, 782
BseYI	CCCAGC	2 cut(s)	328, 773
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	5 cut(s)	156, 449, 581, 607, 686
BsiHKAI	GWGCWC	2 cut(s)	9, 435
BsiSI	CCGG	2 cut(s)	95, 243
BsiWI	CGTACG	1 cut(s)	760
BslFI	GGGAC	2 cut(s)	77, 324
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	77, 324
BsnI	GGCC	5 cut(s)	156, 449, 581, 607, 686
Bsp1286I	GDGCHC	3 cut(s)	9, 435, 551
Bsp143I	GATC	7 cut(s)	100, 250, 499, 555, 562, 690, 715
Bsp1720I	GCTNAGC	1 cut(s)	455
BspANI	GGCC	5 cut(s)	156, 449, 581, 607, 686
BspCNI	CTCAG	3 cut(s)	447, 563, 619
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	126, 384
BsrI	ACTGG	2 cut(s)	164, 368
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	7 cut(s)	100, 250, 499, 555, 562, 690, 715
Bst2UI	CCWGG	3 cut(s)	392, 583, 792
Bst4CI	ACNGT	1 cut(s)	669
BstC8I	GCNNGC	2 cut(s)	46, 609
BstDEI	CTNAG	4 cut(s)	455, 550, 627, 737
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	595, 757
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	770
BstKTI	GATC	7 cut(s)	103, 253, 502, 558, 565, 693, 718
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	7 cut(s)	100, 250, 499, 555, 562, 690, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	3 cut(s)	392, 583, 792
BstSCI	CCNGG	4 cut(s)	93, 390, 581, 790
BstSFI	CTRYAG	1 cut(s)	487
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	268, 471, 782
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	5 cut(s)	156, 449, 581, 607, 686
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	595, 757
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	3 cut(s)	402, 558, 565
Cac8I	GCNNGC	2 cut(s)	46, 609
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	1 cut(s)	770
Cfr13I	GGNCC	1 cut(s)	631
Csp6I	GTAC	4 cut(s)	371, 469, 761, 788
CviAII	CATG	4 cut(s)	17, 65, 532, 572
CviQI	GTAC	4 cut(s)	371, 469, 761, 788
DdeI	CTNAG	4 cut(s)	455, 550, 627, 737
DpnI	GATC	7 cut(s)	102, 252, 501, 557, 564, 692, 717
DpnII	GATC	7 cut(s)	100, 250, 499, 555, 562, 690, 715
DriI	GACNNNNNGTC	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	154
Eam1105I	GACNNNNNGTC	1 cut(s)	598
Eco147I	AGGCCT	2 cut(s)	581, 607
Eco24I	GRGCYC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	631
EcoRII	CCWGG	3 cut(s)	390, 581, 790
EcoT38I	GRGCYC	1 cut(s)	551
FaeI	CATG	4 cut(s)	20, 68, 535, 575
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	77, 324
FatI	CATG	4 cut(s)	16, 64, 531, 571
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	2 cut(s)	555, 715
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	4 cut(s)	14, 282, 460, 771
FokI	GGATG	2 cut(s)	602, 764
FriOI	GRGCYC	1 cut(s)	551
Fsp4HI	GCNGC	4 cut(s)	14, 282, 460, 771
FspBI	CTAG	4 cut(s)	201, 422, 494, 603
GlaI	GCGC	1 cut(s)	769
GluI	GCNGC	4 cut(s)	14, 282, 460, 771
GsaI	CCCAGC	2 cut(s)	332, 777
HaeIII	GGCC	5 cut(s)	156, 449, 581, 607, 686
HapII	CCGG	2 cut(s)	95, 243
HhaI	GCGC	1 cut(s)	770
Hin1II	CATG	4 cut(s)	20, 68, 535, 575
Hin6I	GCGC	1 cut(s)	768
HinP1I	GCGC	1 cut(s)	768
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	2 cut(s)	268, 659
HinfI	GANTC	4 cut(s)	145, 160, 197, 311
HpaII	CCGG	2 cut(s)	95, 243
HphI	GGTGA	4 cut(s)	191, 301, 491, 497
Hpy166II	GTNNAC	2 cut(s)	33, 442
Hpy188III	TCNNGA	3 cut(s)	532, 722, 749
Hpy8I	GTNNAC	2 cut(s)	33, 442
Hpy99I	CGWCG	2 cut(s)	440, 698
HpyAV	CCTTC	3 cut(s)	138, 286, 421
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4IV	ACGT	2 cut(s)	438, 599
HpyCH4V	TGCA	3 cut(s)	16, 284, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	4 cut(s)	455, 550, 627, 737
HpySE526I	ACGT	2 cut(s)	438, 599
Hsp92II	CATG	4 cut(s)	20, 68, 535, 575
HspAI	GCGC	1 cut(s)	768
Ksp22I	TGATCA	2 cut(s)	555, 715
Kzo9I	GATC	7 cut(s)	100, 250, 499, 555, 562, 690, 715
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	3 cut(s)	268, 471, 782
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	4 cut(s)	201, 422, 494, 603
MaeII	ACGT	2 cut(s)	438, 599
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	7 cut(s)	102, 252, 501, 557, 564, 692, 717
MboI	GATC	7 cut(s)	100, 250, 499, 555, 562, 690, 715
MboII	GAAGA	4 cut(s)	185, 494, 547, 628
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	3 cut(s)	9, 435, 551
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	3 cut(s)	230, 409, 725
MluNI	TGGCCA	1 cut(s)	156
MnlI	CCTC	4 cut(s)	439, 579, 622, 758
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	2 cut(s)	95, 243
MspR9I	CCNGG	4 cut(s)	95, 392, 583, 792
MvaI	CCWGG	3 cut(s)	392, 583, 792
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	7 cut(s)	100, 250, 499, 555, 562, 690, 715
NlaIII	CATG	4 cut(s)	20, 68, 535, 575
NlaIV	GGNNCC	2 cut(s)	126, 384
NmuCI	GTSAC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	531
PceI	AGGCCT	2 cut(s)	581, 607
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PfeI	GAWTC	4 cut(s)	145, 160, 197, 311
Pfl23II	CGTACG	1 cut(s)	760
PkrI	GCNGC	4 cut(s)	15, 283, 461, 772
Psp6I	CCWGG	3 cut(s)	390, 581, 790
PspFI	CCCAGC	2 cut(s)	328, 773
PspGI	CCWGG	3 cut(s)	390, 581, 790
PspLI	CGTACG	1 cut(s)	760
PspN4I	GGNNCC	2 cut(s)	126, 384
PspPI	GGNCC	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	4 cut(s)	372, 470, 762, 789
RsaNI	GTAC	4 cut(s)	371, 469, 761, 788
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	4 cut(s)	14, 282, 460, 771
Sau3AI	GATC	7 cut(s)	100, 250, 499, 555, 562, 690, 715
Sau96I	GGNCC	1 cut(s)	631
ScrFI	CCNGG	4 cut(s)	95, 392, 583, 792
SduI	GDGCHC	3 cut(s)	9, 435, 551
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	487
SinI	GGWCC	1 cut(s)	631
SmlI	CTYRAG	2 cut(s)	8, 656
SmoI	CTYRAG	2 cut(s)	8, 656
Sse9I	AATT	3 cut(s)	230, 409, 725
SseBI	AGGCCT	2 cut(s)	581, 607
SspMI	CTAG	4 cut(s)	201, 422, 494, 603
StuI	AGGCCT	2 cut(s)	581, 607
StyD4I	CCNGG	4 cut(s)	93, 390, 581, 790
TaaI	ACNGT	1 cut(s)	669
TaiI	ACGT	2 cut(s)	441, 602
TaqI	TCGA	6 cut(s)	32, 78, 84, 435, 674, 693
TasI	AATT	3 cut(s)	230, 409, 725
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	4 cut(s)	145, 160, 197, 311
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	3 cut(s)	402, 558, 565
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	4 cut(s)	13, 281, 459, 770
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	4 cut(s)	81, 291, 520, 548
TspRI	CASTG	3 cut(s)	402, 558, 565
VpaK11BI	GGWCC	1 cut(s)	631
XapI	RAATTY	2 cut(s)	230, 409
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	4 cut(s)	201, 422, 494, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.