FvH4_5g30360

Cytochrome C biogenesis protein transmembrane region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009309
Physical Location & Seq
Forward (+)
21247717 .. 21251083
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30360.t1

Sequence Viewer

Length: 1149 bp
ATGGAAAGGCTTCTGTCCTCTTCAACCTCGACCCCTAAACTCCATCTTAAACCCTCTTCCTTTCACCACCGCCTCGCCCGTCTCGACTCCTCCAACCTCAATTTCCCATCTTCAAAGCTGCCCAGTTTGAGACGCGTCGCCTCTGTTTCCTGCAAACATCAAAACCCATCTCCATTTTCTTCTTCTTCGTCTTCGCCGGAGGGTTTGCCGTCTCTCTCTCTGAAGCGGGCCGGGTCGGGGCCAAATGGGTCGGAGCCAAAAACCCATCTTCTCAATCAGATCGCAGATGGAGCTTCTAAGCAACGCAAGGCAATCACCACTGGGGCATTTGTTGCACTTTCTGCTCTTATTTTGGTCTTAGTACAACCTGCCTTTGCACCAGCCGCTCTTGCTTCTTTTCAAACTGCAACAAAAACAGGTGGTCCAGCTGCTGTTGCAGTCGGGGGAAGACTCATCCAGACTGAATTACTCAGTAGTGCATGGACTGGTTTCTTTGCTGGTTGCTTGCACACATTATCAGGGCCTGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGGCGTACCCGTATTGAAAGTGCTCTTGTTGGAGCCCTCTGGGGATGTGGCCATGATGCTGGCCAGGTTATCTTTGGATTATTATTTCTGCTACTAAAGGACCGGCTCCATATTGAAATTATCCGTACTTGGGGCACAAGAGTTGTTGGGCTTACTCTATTAGTTATTGGTGCTATGGGCATTAAGGAAGCTTCAGAAGTCCCAAGTCCTTGTGTTGCCTTGGAGAATGGTGAGTGTGATGTTAGTGTATATGAATCTCTTGATAATCCAACTGTTGGGAAGAAGAAGATTGGTTTTGCCACTTTTGCCACCGGAATTGTGCATGGGTTGCAGCCAGATGCATTGATGATGGTGTTGCCTGCACTTGCTTTGCCATCTCGTGTTGCTGGTGCTGCATTTCTAGTTATGTTCTTAGTTGGGACCGTGGTTGCCATGGGAAGCTACACAGTTTTTCTAGGCTCATGTAGTCAGGCATTAAAGGACAGAGTGCCCAGAATAACAGAGAAACTGACATGGGCTTCTTCCCTGATTGCTATTGCTCTTGGATTTTCCATCATCATCAGCCAGTTCTTTGGGTACAGCCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DsbD_2

Protein Analysis

383

Amino Acids

40.1

Weight (kDa)

9.55

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_2 PF13386 210 - 354 6.2e-06 Cytochrome C biogenesis protein transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 833
AccBSI CCGCTC 1 cut(s) 386
AccII CGCG 1 cut(s) 135
AciI CCGC 3 cut(s) 70, 226, 384
AcoI YGGCCR 2 cut(s) 607, 619
AcuI CTGAAG 2 cut(s) 242, 735
AfaI GTAC 4 cut(s) 363, 565, 685, 1136
AfiI CCNNNNNNNGG 3 cut(s) 237, 688, 833
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 5 cut(s) 24, 114, 401, 575, 674
AjnI CCWGG 1 cut(s) 621
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 6 cut(s) 118, 293, 428, 536, 749, 999
AluI AGCT 6 cut(s) 118, 293, 428, 536, 749, 999
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 3 cut(s) 86, 124, 216
AlwNI CAGNNNCTG 2 cut(s) 431, 524
AoxI GGCC 5 cut(s) 228, 239, 521, 607, 619
ApeKI GCWGC 5 cut(s) 118, 428, 536, 889, 950
Asp700I GAANNNNTTC 1 cut(s) 9
AspS9I GGNCC 6 cut(s) 228, 239, 422, 521, 658, 978
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 56, 307, 800
AvaII GGWCC 3 cut(s) 422, 658, 978
BaeGI GKGCMC 2 cut(s) 695, 1050
BalI TGGCCA 2 cut(s) 609, 621
BanII GRGCYC 1 cut(s) 595
BauI CACGAG 1 cut(s) 936
BbsI GAAGAC 2 cut(s) 183, 454
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 5 cut(s) 105, 415, 523, 901, 937
BccI CCATC 8 cut(s) 51, 115, 175, 273, 281, 901, 940, 1118
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 623
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 3 cut(s) 86, 124, 216
BfaI CTAG 3 cut(s) 533, 959, 1013
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 6 cut(s) 119, 384, 429, 537, 890, 951
BlsI GCNGC 6 cut(s) 120, 385, 430, 538, 891, 952
Bme1390I CCNGG 2 cut(s) 232, 623
Bme18I GGWCC 3 cut(s) 422, 658, 978
BmgT120I GGNCC 6 cut(s) 228, 239, 422, 521, 658, 978
BmiI GGNNCC 6 cut(s) 240, 255, 546, 592, 665, 979
BmrFI CCNGG 2 cut(s) 232, 623
BmrI ACTGGG 2 cut(s) 117, 330
BmsI GCATC 2 cut(s) 604, 886
BmuI ACTGGG 2 cut(s) 117, 330
BpiI GAAGAC 2 cut(s) 183, 454
BpuMI CCSGG 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 777, 981, 990
BsaWI WCCGGW 1 cut(s) 869
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 688, 833
Bse118I RCCGGY 1 cut(s) 660
Bse1I ACTGG 4 cut(s) 123, 325, 490, 1123
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 3 cut(s) 777, 981, 990
BseGI GGATG 2 cut(s) 453, 608
BseLI CCNNNNNNNGG 3 cut(s) 237, 688, 833
BseMII CTCAG 1 cut(s) 484
BseNI ACTGG 4 cut(s) 123, 325, 490, 1123
BseRI GAGGAG 1 cut(s) 79
BseSI GKGCMC 2 cut(s) 695, 1050
BseXI GCAGC 5 cut(s) 105, 415, 523, 901, 937
BsgI GTGCAG 1 cut(s) 903
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 5 cut(s) 230, 241, 523, 609, 621
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 4 cut(s) 197, 231, 661, 870
BslFI GGGAC 2 cut(s) 743, 991
BslI CCNNNNNNNGG 3 cut(s) 237, 688, 833
BsmAI GTCTC 3 cut(s) 86, 124, 216
BsmBI CGTCTC 3 cut(s) 86, 124, 216
BsmFI GGGAC 2 cut(s) 743, 991
BsnI GGCC 5 cut(s) 230, 241, 523, 609, 621
Bsp1286I GDGCHC 4 cut(s) 583, 595, 695, 1050
Bsp143I GATC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 3 cut(s) 70, 226, 384
BspANI GGCC 5 cut(s) 230, 241, 523, 609, 621
BspCNI CTCAG 1 cut(s) 483
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 6 cut(s) 240, 255, 546, 592, 665, 979
BspMI ACCTGC 1 cut(s) 376
BsrBI CCGCTC 1 cut(s) 386
BsrFI RCCGGY 1 cut(s) 660
BsrI ACTGG 4 cut(s) 123, 325, 490, 1123
BssAI RCCGGY 1 cut(s) 660
BssECI CCNNGG 3 cut(s) 777, 981, 990
BssMI GATC 1 cut(s) 279
BssSI CACGAG 1 cut(s) 936
BssT1I CCWWGG 2 cut(s) 777, 990
Bst2BI CACGAG 1 cut(s) 936
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 3 cut(s) 832, 982, 1006
Bst6I CTCTTC 2 cut(s) 25, 61
BstAPI GCANNNNNTGC 3 cut(s) 332, 341, 886
BstC8I GCNNGC 4 cut(s) 228, 506, 619, 918
BstDEI CTNAG 4 cut(s) 297, 358, 470, 970
BstDSI CCRYGG 2 cut(s) 981, 990
BstF5I GGATG 2 cut(s) 453, 608
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 3 cut(s) 86, 124, 216
BstMBI GATC 1 cut(s) 279
BstNI CCWGG 1 cut(s) 623
BstSCI CCNGG 2 cut(s) 230, 621
BstSLI GKGCMC 2 cut(s) 695, 1050
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 105, 415, 523, 901, 937
BstV2I GAAGAC 2 cut(s) 183, 454
BstXI CCANNNNNNTGG 2 cut(s) 617, 1130
BsuRI GGCC 5 cut(s) 230, 241, 523, 609, 621
BtgI CCRYGG 2 cut(s) 981, 990
BtsCI GGATG 2 cut(s) 453, 608
BtsIMutI CAGTG 1 cut(s) 318
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 4 cut(s) 228, 506, 619, 918
CaiI CAGNNNCTG 2 cut(s) 431, 524
Cfr10I RCCGGY 1 cut(s) 660
Cfr13I GGNCC 6 cut(s) 228, 239, 422, 521, 658, 978
CseI GACGC 2 cut(s) 124, 141
Csp6I GTAC 4 cut(s) 362, 564, 684, 1135
CspCI CAANNNNNGTGG 2 cut(s) 856, 891
CviAII CATG 6 cut(s) 480, 611, 881, 991, 1020, 1071
CviQI GTAC 4 cut(s) 362, 564, 684, 1135
DdeI CTNAG 4 cut(s) 297, 358, 470, 970
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 607, 619
Eam1104I CTCTTC 2 cut(s) 25, 61
EarI CTCTTC 2 cut(s) 25, 61
Eco130I CCWWGG 2 cut(s) 777, 990
Eco24I GRGCYC 1 cut(s) 595
Eco47I GGWCC 3 cut(s) 422, 658, 978
Eco57I CTGAAG 2 cut(s) 242, 735
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 777, 990
EcoT22I ATGCAT 1 cut(s) 901
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 2 cut(s) 777, 990
Esp3I CGTCTC 3 cut(s) 86, 124, 216
FaeI CATG 6 cut(s) 483, 614, 884, 994, 1023, 1074
FaqI GGGAC 2 cut(s) 743, 991
FatI CATG 6 cut(s) 479, 610, 880, 990, 1019, 1070
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 6 cut(s) 119, 384, 429, 537, 890, 951
FokI GGATG 2 cut(s) 440, 615
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 6 cut(s) 119, 384, 429, 537, 890, 951
FspBI CTAG 3 cut(s) 533, 959, 1013
GluI GCNGC 6 cut(s) 119, 384, 429, 537, 890, 951
HaeIII GGCC 5 cut(s) 230, 241, 523, 609, 621
HapII CCGG 4 cut(s) 197, 231, 661, 870
HgaI GACGC 2 cut(s) 124, 141
Hin1II CATG 6 cut(s) 483, 614, 884, 994, 1023, 1074
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 3 cut(s) 86, 450, 812
HpaII CCGG 4 cut(s) 197, 231, 661, 870
HphI GGTGA 3 cut(s) 56, 307, 800
Hpy188I TCNGA 4 cut(s) 222, 253, 279, 754
Hpy188III TCNNGA 3 cut(s) 83, 457, 818
Hpy99I CGWCG 1 cut(s) 140
HpyCH4III ACNGT 3 cut(s) 832, 982, 1006
HpyF3I CTNAG 4 cut(s) 297, 358, 470, 970
Hsp92II CATG 6 cut(s) 483, 614, 884, 994, 1023, 1074
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 5 cut(s) 253, 290, 550, 590, 669
Lsp1109I GCAGC 5 cut(s) 105, 415, 523, 901, 937
LweI GCATC 2 cut(s) 604, 886
MaeI CTAG 3 cut(s) 533, 959, 1013
MalI GATC 1 cut(s) 281
MbiI CCGCTC 1 cut(s) 386
MboI GATC 1 cut(s) 279
MfeI CAATTG 1 cut(s) 555
MhlI GDGCHC 4 cut(s) 583, 595, 695, 1050
MlsI TGGCCA 2 cut(s) 609, 621
MluCI AATT 5 cut(s) 100, 464, 555, 675, 873
MluI ACGCGT 1 cut(s) 133
MluNI TGGCCA 2 cut(s) 609, 621
MlyI GAGTC 2 cut(s) 80, 444
MmeI TCCRAC 4 cut(s) 117, 231, 568, 851
MnlI CCTC 9 cut(s) 28, 37, 64, 83, 100, 107, 151, 193, 605
Mox20I TGGCCA 2 cut(s) 609, 621
Mph1103I ATGCAT 1 cut(s) 901
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 2 cut(s) 609, 621
MseI TTAA 3 cut(s) 48, 741, 1034
Msp20I TGGCCA 2 cut(s) 609, 621
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 4 cut(s) 197, 231, 661, 870
MspR9I CCNGG 2 cut(s) 232, 623
MunI CAATTG 1 cut(s) 555
MvaI CCWGG 1 cut(s) 623
MvnI CGCG 1 cut(s) 135
NciI CCSGG 1 cut(s) 232
NcoI CCATGG 1 cut(s) 990
NdeII GATC 1 cut(s) 279
NlaIII CATG 6 cut(s) 483, 614, 884, 994, 1023, 1074
NlaIV GGNNCC 6 cut(s) 240, 255, 546, 592, 665, 979
NsiI ATGCAT 1 cut(s) 901
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 812
PflMI CCANNNNNTGG 1 cut(s) 833
PkrI GCNGC 6 cut(s) 120, 385, 430, 538, 891, 952
PleI GAGTC 2 cut(s) 80, 444
PpsI GAGTC 2 cut(s) 80, 444
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 6 cut(s) 240, 255, 546, 592, 665, 979
PspPI GGNCC 6 cut(s) 228, 239, 422, 521, 658, 978
PstNI CAGNNNCTG 2 cut(s) 431, 524
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 4 cut(s) 363, 565, 685, 1136
RsaNI GTAC 4 cut(s) 362, 564, 684, 1135
SaqAI TTAA 3 cut(s) 48, 741, 1034
SatI GCNGC 6 cut(s) 119, 384, 429, 537, 890, 951
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 6 cut(s) 228, 239, 422, 521, 658, 978
SchI GAGTC 2 cut(s) 80, 444
ScrFI CCNGG 2 cut(s) 232, 623
SduI GDGCHC 4 cut(s) 583, 595, 695, 1050
SfaNI GCATC 2 cut(s) 604, 886
SinI GGWCC 3 cut(s) 422, 658, 978
Sse9I AATT 5 cut(s) 100, 464, 555, 675, 873
SsiI CCGC 3 cut(s) 70, 226, 384
SspMI CTAG 3 cut(s) 533, 959, 1013
StyD4I CCNGG 2 cut(s) 230, 621
StyI CCWWGG 2 cut(s) 777, 990
TaaI ACNGT 3 cut(s) 832, 982, 1006
TaqI TCGA 2 cut(s) 29, 84
TasI AATT 5 cut(s) 100, 464, 555, 675, 873
TatI WGTACW 1 cut(s) 361
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 1 cut(s) 812
Tru1I TTAA 3 cut(s) 48, 741, 1034
Tru9I TTAA 3 cut(s) 48, 741, 1034
TscAI CASTG 1 cut(s) 325
TseI GCWGC 5 cut(s) 118, 428, 536, 889, 950
TspDTI ATGAA 1 cut(s) 825
TspGWI ACGGA 1 cut(s) 671
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 833
VpaK11BI GGWCC 3 cut(s) 422, 658, 978
XcmI CCANNNNNNNNNTGG 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 3 cut(s) 533, 959, 1013
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.