MD05G1122200.v1.1

Cytochrome C biogenesis protein transmembrane region

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
24478721 .. 24481899
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1122200.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGAAAGGCTTCTGTCCTCTTCACCCCCAACCCCTTTGAAACTCCATCTAAAACCCTCTCCTTTCCTCAGTCGACTCGCCCGTATTGACTCGGCCAAACTCGGTTTTCCCGCTTCACAACTGCCCAATCTCAGACGGGTCCGCTTGGTTTCCTGCAAACATCAAAACCCATCTCCATTTTCTTCTGGGTCTCCTTCATCGGCGCCGTCGAACATTCTGCCGTCTCTCTCGTCGAACCGCGCCGGGTCGCCAAATGGGTCGGAGCCAAAATCCCAGATTCTCAATCAGATCGCAACCAGGGATTCTAAGCTGCGCAAGGCCATCACCACTGGAGCATTTGTTGCGCTTTCTGCACTTGTTTTGATCTTAATACAACCAGCTTTTGCACCAGCGGCTTTTGCATCCTTTCCAACTGCAACCAACACTGGTAGCCCAGCGGCTGCTATTGGGGGAAGACTGATCCAGACAGAGTTGCTTAGTAGTGCATGGACTGGTTTCTTTGCTGGTTGCTTACACACATTATCGGGGCCAGACCACCTAGCAGCTTTGGCTCCACTCTCAATTGGACGTACCCGCATAGAAAGTGCTCTAGTCGGAGCCCTCTGGGGATGTGGCCATGACGCTGGCCAGGTTATCTTTGGCTTGATATTTCTTTTACTAAAGGATAGGCTTCATATTGAGATTATCCGAACTTGGGGCACAAGAGTTGTGGGGCTTACCCTACTAGTTATTGGTGGTATGGGTATTAAGGAAGCTTCAGAAATCCCTACTCCTTGTGTTGCCTTAGAGAATGGCGAGTGTGATGTTAGTGTATATGAGTCTCTAGATAACCCTACAGTCGGAAAGAAGAAGATTGGTTTTGCTACTTTTGCCACTGGAATTGTCCACGGGCTGCAGCCAGATGCATTGATGATGGTCTTGCCAGCCCTCGCTTTGCCATCTCGAGTAGCTGGCGCTGCATTCCTGGTTATGTTTTTAGTTGGGACCGTAGTTGCAATGGGAAGCTATACTGTCTTTCTAGGTTCATGTAGTCGGGCATTAAAGGATCGAGTTCCCAGAATTACAGAGAAACTGACATGGGCTTCTTCCCTGGTTGCAATTGCTCTTGGGTTCGCCATCATCATCAGCCAGTTCTTCGGGTATAGCCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

385

Amino Acids

40.44

Weight (kDa)

9.78

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 73
AccII CGCG 1 cut(s) 240
AciI CCGC 6 cut(s) 111, 142, 238, 392, 437, 574
AclWI GGATC 2 cut(s) 454, 1053
AcoI YGGCCR 3 cut(s) 93, 613, 625
AcuI CTGAAG 1 cut(s) 741
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 2 cut(s) 694, 839
AgsI TTSAA 1 cut(s) 40
AhlI ACTAGT 1 cut(s) 724
AjnI CCWGG 4 cut(s) 296, 627, 963, 1089
AluBI AGCT 6 cut(s) 310, 380, 545, 755, 950, 1005
AluI AGCT 6 cut(s) 310, 380, 545, 755, 950, 1005
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 3 cut(s) 195, 228, 825
AlwI GGATC 2 cut(s) 454, 1053
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 942
AoxI GGCC 5 cut(s) 93, 318, 527, 613, 625
ApeKI GCWGC 6 cut(s) 310, 440, 542, 892, 895, 956
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 5 cut(s) 205, 242, 315, 346, 956
AspS9I GGNCC 3 cut(s) 139, 527, 984
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 15, 316
AvaI CYCGRG 1 cut(s) 942
AvaII GGWCC 2 cut(s) 139, 984
BaeGI GKGCMC 1 cut(s) 701
BalI TGGCCA 2 cut(s) 615, 627
BanI GGYRCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 6 cut(s) 297, 427, 554, 879, 907, 943
BccI CCATC 6 cut(s) 54, 178, 329, 907, 946, 1124
BceAI ACGGC 2 cut(s) 190, 205
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 4 cut(s) 298, 629, 965, 1091
BcnI CCSGG 1 cut(s) 244
BcoDI GTCTC 3 cut(s) 195, 228, 825
BcuI ACTAGT 1 cut(s) 724
BfaI CTAG 5 cut(s) 539, 590, 725, 824, 1019
BfmI CTRYAG 2 cut(s) 834, 893
BfoI RGCGCY 2 cut(s) 206, 957
BisI GCNGC 8 cut(s) 311, 393, 438, 441, 543, 893, 896, 957
BlsI GCNGC 8 cut(s) 312, 394, 439, 442, 544, 894, 897, 958
Bme1390I CCNGG 5 cut(s) 244, 298, 629, 965, 1091
Bme18I GGWCC 2 cut(s) 139, 984
BmeT110I CYCGRG 1 cut(s) 942
BmgT120I GGNCC 3 cut(s) 139, 527, 984
BmiI GGNNCC 7 cut(s) 140, 204, 264, 528, 552, 598, 985
BmrFI CCNGG 5 cut(s) 244, 298, 629, 965, 1091
BmsI GCATC 2 cut(s) 410, 892
BpiI GAAGAC 1 cut(s) 460
BpmI CTGGAG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 3 cut(s) 297, 886, 1089
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 839
Bse1I ACTGG 5 cut(s) 334, 430, 496, 880, 1129
Bse3DI GCAATG 1 cut(s) 1002
BseBI CCWGG 4 cut(s) 298, 629, 965, 1091
BseDI CCNNGG 3 cut(s) 297, 886, 1089
BseGI GGATG 2 cut(s) 401, 614
BseLI CCNNNNNNNGG 2 cut(s) 694, 839
BseMI GCAATG 1 cut(s) 1002
BseMII CTCAG 2 cut(s) 82, 145
BseNI ACTGG 5 cut(s) 334, 430, 496, 880, 1129
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 6 cut(s) 297, 427, 554, 879, 907, 943
BseYI CCCAGC 1 cut(s) 433
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 5 cut(s) 95, 320, 529, 615, 627
BshNI GGYRCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 589
BsiHKCI CYCGRG 1 cut(s) 942
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 997
BslI CCNNNNNNNGG 2 cut(s) 694, 839
BsmAI GTCTC 3 cut(s) 195, 228, 825
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 997
BsmI GAATGC 1 cut(s) 959
BsnI GGCC 5 cut(s) 95, 320, 529, 615, 627
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 942
Bsp1286I GDGCHC 3 cut(s) 589, 601, 701
Bsp143I GATC 4 cut(s) 288, 363, 459, 1045
BspACI CCGC 6 cut(s) 111, 142, 238, 392, 437, 574
BspANI GGCC 5 cut(s) 95, 320, 529, 615, 627
BspCNI CTCAG 2 cut(s) 81, 144
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 7 cut(s) 140, 204, 264, 528, 552, 598, 985
BspMAI CTGCAG 1 cut(s) 897
BspPI GGATC 2 cut(s) 454, 1053
BspT107I GGYRCC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 1002
BsrI ACTGG 5 cut(s) 334, 430, 496, 880, 1129
BssECI CCNNGG 3 cut(s) 297, 886, 1089
BssMI GATC 4 cut(s) 288, 363, 459, 1045
BssNI GRCGYC 1 cut(s) 203
Bst2UI CCWGG 4 cut(s) 298, 629, 965, 1091
Bst4CI ACNGT 3 cut(s) 838, 988, 1012
Bst6I CTCTTC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 3 cut(s) 625, 924, 952
BstDEI CTNAG 5 cut(s) 68, 131, 306, 476, 784
BstDSI CCRYGG 1 cut(s) 886
BstF5I GGATG 2 cut(s) 401, 614
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 2 cut(s) 206, 957
BstHHI GCGC 5 cut(s) 205, 242, 315, 346, 956
BstKTI GATC 4 cut(s) 291, 366, 462, 1048
BstMAI GTCTC 3 cut(s) 195, 228, 825
BstMBI GATC 4 cut(s) 288, 363, 459, 1045
BstMWI GCNNNNNNNGC 7 cut(s) 341, 350, 392, 398, 548, 869, 956
BstNI CCWGG 4 cut(s) 298, 629, 965, 1091
BstSCI CCNGG 5 cut(s) 242, 296, 627, 963, 1089
BstSFI CTRYAG 2 cut(s) 834, 893
BstSLI GKGCMC 1 cut(s) 701
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 6 cut(s) 297, 427, 554, 879, 907, 943
BstV2I GAAGAC 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 623
BsuRI GGCC 5 cut(s) 95, 320, 529, 615, 627
BtgI CCRYGG 1 cut(s) 886
BtsCI GGATG 2 cut(s) 401, 614
BtsIMutI CAGTG 3 cut(s) 327, 423, 873
Cac8I GCNNGC 3 cut(s) 625, 924, 952
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 5 cut(s) 205, 242, 315, 346, 956
Cfr13I GGNCC 3 cut(s) 139, 527, 984
CseI GACGC 1 cut(s) 629
Csp6I GTAC 1 cut(s) 570
CspCI CAANNNNNGTGG 4 cut(s) 690, 725, 862, 897
CviAII CATG 4 cut(s) 486, 617, 1026, 1077
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 5 cut(s) 68, 131, 306, 476, 784
DinI GGCGCC 1 cut(s) 204
DpnI GATC 4 cut(s) 290, 365, 461, 1047
DpnII GATC 4 cut(s) 288, 363, 459, 1045
EaeI YGGCCR 3 cut(s) 93, 613, 625
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 601
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 139, 984
Eco57I CTGAAG 1 cut(s) 741
Eco88I CYCGRG 1 cut(s) 942
EcoRII CCWGG 4 cut(s) 296, 627, 963, 1089
EcoT22I ATGCAT 1 cut(s) 907
EcoT38I GRGCYC 1 cut(s) 601
EgeI GGCGCC 1 cut(s) 204
EheI GGCGCC 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 4 cut(s) 489, 620, 1029, 1080
FaqI GGGAC 1 cut(s) 997
FatI CATG 4 cut(s) 485, 616, 1025, 1076
FauI CCCGC 2 cut(s) 118, 581
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 8 cut(s) 311, 393, 438, 441, 543, 893, 896, 957
FokI GGATG 2 cut(s) 388, 621
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 8 cut(s) 311, 393, 438, 441, 543, 893, 896, 957
FspBI CTAG 5 cut(s) 539, 590, 725, 824, 1019
FspI TGCGCA 1 cut(s) 314
GlaI GCGC 5 cut(s) 204, 241, 314, 345, 955
GluI GCNGC 8 cut(s) 311, 393, 438, 441, 543, 893, 896, 957
GsaI CCCAGC 1 cut(s) 437
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 2 cut(s) 206, 957
HaeIII GGCC 5 cut(s) 95, 320, 529, 615, 627
HapII CCGG 1 cut(s) 243
HgaI GACGC 1 cut(s) 629
HhaI GCGC 5 cut(s) 205, 242, 315, 346, 956
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 4 cut(s) 489, 620, 1029, 1080
Hin6I GCGC 5 cut(s) 203, 240, 313, 344, 954
HinP1I GCGC 5 cut(s) 203, 240, 313, 344, 954
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 5 cut(s) 75, 89, 277, 302, 818
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 15, 316
Hpy166II GTNNAC 2 cut(s) 74, 886
Hpy188I TCNGA 7 cut(s) 134, 262, 288, 596, 689, 760, 842
Hpy188III TCNNGA 3 cut(s) 463, 824, 942
Hpy8I GTNNAC 2 cut(s) 74, 886
Hpy99I CGWCG 2 cut(s) 211, 235
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 3 cut(s) 838, 988, 1012
HpyCH4IV ACGT 1 cut(s) 568
HpyF10VI GCNNNNNNNGC 7 cut(s) 341, 350, 392, 398, 548, 869, 956
HpyF3I CTNAG 5 cut(s) 68, 131, 306, 476, 784
HpySE526I ACGT 1 cut(s) 568
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 4 cut(s) 489, 620, 1029, 1080
HspAI GCGC 5 cut(s) 203, 240, 313, 344, 954
KasI GGCGCC 1 cut(s) 202
Kzo9I GATC 4 cut(s) 288, 363, 459, 1045
LmnI GCTCC 4 cut(s) 262, 332, 556, 596
Lsp1109I GCAGC 6 cut(s) 297, 427, 554, 879, 907, 943
LweI GCATC 2 cut(s) 410, 892
MaeI CTAG 5 cut(s) 539, 590, 725, 824, 1019
MaeII ACGT 1 cut(s) 568
MalI GATC 4 cut(s) 290, 365, 461, 1047
MboI GATC 4 cut(s) 288, 363, 459, 1045
MboII GAAGA 7 cut(s) 12, 174, 465, 859, 862, 1077, 1126
MfeI CAATTG 2 cut(s) 561, 1098
MhlI GDGCHC 3 cut(s) 589, 601, 701
MlsI TGGCCA 2 cut(s) 615, 627
MluCI AATT 4 cut(s) 561, 879, 1059, 1098
MluNI TGGCCA 2 cut(s) 615, 627
Mly113I GGCGCC 1 cut(s) 203
MlyI GAGTC 3 cut(s) 69, 83, 827
MmeI TCCRAC 4 cut(s) 240, 434, 574, 820
MnlI CCTC 5 cut(s) 28, 67, 77, 611, 938
Mox20I TGGCCA 2 cut(s) 615, 627
Mph1103I ATGCAT 1 cut(s) 907
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 2 cut(s) 615, 627
MseI TTAA 3 cut(s) 368, 747, 1040
Msp20I TGGCCA 2 cut(s) 615, 627
MspA1I CMGCKG 2 cut(s) 392, 437
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 5 cut(s) 244, 298, 629, 965, 1091
MunI CAATTG 2 cut(s) 561, 1098
Mva1269I GAATGC 1 cut(s) 959
MvaI CCWGG 4 cut(s) 298, 629, 965, 1091
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 7 cut(s) 341, 350, 392, 398, 548, 869, 956
NarI GGCGCC 1 cut(s) 203
NciI CCSGG 1 cut(s) 244
NdeII GATC 4 cut(s) 288, 363, 459, 1045
NlaIII CATG 4 cut(s) 489, 620, 1029, 1080
NlaIV GGNNCC 7 cut(s) 140, 204, 264, 528, 552, 598, 985
NmeAIII GCCGAG 1 cut(s) 71
NsbI TGCGCA 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 907
PaeR7I CTCGAG 1 cut(s) 942
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 206
PctI GAATGC 1 cut(s) 959
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 277, 302
PkrI GCNGC 8 cut(s) 312, 394, 439, 442, 544, 894, 897, 958
PleI GAGTC 3 cut(s) 69, 83, 826
PluTI GGCGCC 1 cut(s) 206
PpsI GAGTC 3 cut(s) 69, 83, 826
Psp6I CCWGG 4 cut(s) 296, 627, 963, 1089
PspFI CCCAGC 1 cut(s) 433
PspGI CCWGG 4 cut(s) 296, 627, 963, 1089
PspN4I GGNNCC 7 cut(s) 140, 204, 264, 528, 552, 598, 985
PspPI GGNCC 3 cut(s) 139, 527, 984
PstI CTGCAG 1 cut(s) 897
PstNI CAGNNNCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
SalI GTCGAC 1 cut(s) 72
SaqAI TTAA 3 cut(s) 368, 747, 1040
SatI GCNGC 8 cut(s) 311, 393, 438, 441, 543, 893, 896, 957
Sau3AI GATC 4 cut(s) 288, 363, 459, 1045
Sau96I GGNCC 3 cut(s) 139, 527, 984
SchI GAGTC 3 cut(s) 69, 83, 827
ScrFI CCNGG 5 cut(s) 244, 298, 629, 965, 1091
SduI GDGCHC 3 cut(s) 589, 601, 701
SfaNI GCATC 2 cut(s) 410, 892
SfcI CTRYAG 2 cut(s) 834, 893
SfoI GGCGCC 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 942
SinI GGWCC 2 cut(s) 139, 984
SlaI CTCGAG 1 cut(s) 942
SmlI CTYRAG 1 cut(s) 942
SmoI CTYRAG 1 cut(s) 942
SpeI ACTAGT 1 cut(s) 724
Sse9I AATT 4 cut(s) 561, 879, 1059, 1098
SsiI CCGC 6 cut(s) 111, 142, 238, 392, 437, 574
SspDI GGCGCC 1 cut(s) 202
SspMI CTAG 5 cut(s) 539, 590, 725, 824, 1019
StyD4I CCNGG 5 cut(s) 242, 296, 627, 963, 1089
TaaI ACNGT 3 cut(s) 838, 988, 1012
TaiI ACGT 1 cut(s) 571
TaqI TCGA 5 cut(s) 73, 209, 233, 943, 1048
TasI AATT 4 cut(s) 561, 879, 1059, 1098
TauI GCSGC 2 cut(s) 395, 440
TfiI GAWTC 2 cut(s) 277, 302
Tru1I TTAA 3 cut(s) 368, 747, 1040
Tru9I TTAA 3 cut(s) 368, 747, 1040
TscAI CASTG 3 cut(s) 334, 430, 880
TseI GCWGC 6 cut(s) 310, 440, 542, 892, 895, 956
TspDTI ATGAA 3 cut(s) 186, 662, 1014
TspRI CASTG 3 cut(s) 334, 430, 880
VpaK11BI GGWCC 2 cut(s) 139, 984
XbaI TCTAGA 1 cut(s) 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XhoI CTCGAG 1 cut(s) 942
XmiI GTMKAC 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 5 cut(s) 539, 590, 725, 824, 1019
Zsp2I ATGCAT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.