Rmu_co8174708.1_g000001

Cytochrome C biogenesis protein transmembrane region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8174708.1
OG0009309
Physical Location & Seq
Forward (+)
1 .. 585
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8174708.1_g000001.1.cds

Sequence Viewer

Length: 585 bp
acccgcattgaaagtgctcttgttggagccctctggggatgtggccatgatgctggccaggttatctttggattagtatttctactactgaaggaccagctccatattgaagttattcgaacttggggcacaagagttgttgggcttactttactagttattggtgctatgggcatcaaggaagcttcagaagtcccaagtccttgtgttgccttggagaatggcgagtgtgatgttagtgtgtacgaaactcttgataacccaactgttgggaagaagaagattggatttgctacttttgccaccggaattgtgcatgggctgcagccagatgcattgatgatggtgttgcctgcacttgctttgccatctcgtgttgctggcgctgcatttctagttatgttcttagttgggaccgtagttgccatgggaagctacacagtctttctaggctcatgtagtcaggcattaaaggacagagtgcccagaataacagagaaactgacatgggcttcttccctgattgcaattgctcttggatttgccattattatcagccagttctttgggtatagcctgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DsbD_2

Protein Analysis

194

Amino Acids

20.6

Weight (kDa)

6.25

Isoelectric Point (pI)

24.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 269
AciI CCGC 1 cut(s) 4
AcoI YGGCCR 2 cut(s) 43, 55
AcuI CTGAAG 2 cut(s) 110, 171
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 2 cut(s) 11, 110
AhlI ACTAGT 1 cut(s) 154
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 3 cut(s) 100, 185, 435
AluI AGCT 3 cut(s) 100, 185, 435
Alw21I GWGCWC 1 cut(s) 19
AoxI GGCC 2 cut(s) 43, 55
ApeKI GCWGC 3 cut(s) 322, 325, 386
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 94, 414
AsuII TTCGAA 1 cut(s) 118
AvaII GGWCC 2 cut(s) 94, 414
BaeGI GKGCMC 2 cut(s) 131, 486
BalI TGGCCA 2 cut(s) 45, 57
BanII GRGCYC 1 cut(s) 31
BauI CACGAG 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 309, 337, 373
BccI CCATC 2 cut(s) 337, 376
BciT130I CCWGG 1 cut(s) 59
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 3 cut(s) 155, 395, 449
BfmI CTRYAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 387
BisI GCNGC 3 cut(s) 323, 326, 387
BlsI GCNGC 3 cut(s) 324, 327, 388
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 2 cut(s) 94, 414
BmgT120I GGNCC 2 cut(s) 94, 414
BmiI GGNNCC 2 cut(s) 28, 415
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 3 cut(s) 40, 183, 322
Bpu14I TTCGAA 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 213, 426
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 559
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 213, 426
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 559
BseSI GKGCMC 2 cut(s) 131, 486
BseXI GCAGC 3 cut(s) 309, 337, 373
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 2 cut(s) 45, 57
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 2 cut(s) 179, 427
BslI CCNNNNNNNGG 1 cut(s) 269
BsmFI GGGAC 2 cut(s) 179, 427
BsnI GGCC 2 cut(s) 45, 57
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 4 cut(s) 19, 31, 131, 486
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 1 cut(s) 4
BspANI GGCC 2 cut(s) 45, 57
BspLI GGNNCC 2 cut(s) 28, 415
BspMAI CTGCAG 1 cut(s) 327
BspT104I TTCGAA 1 cut(s) 118
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 213, 426
BssSI CACGAG 1 cut(s) 372
BssT1I CCWWGG 2 cut(s) 213, 426
Bst2BI CACGAG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 268, 418, 442
BstAPI GCANNNNNTGC 1 cut(s) 322
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 3 cut(s) 55, 354, 382
BstDEI CTNAG 1 cut(s) 406
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 1 cut(s) 386
BstMWI GCNNNNNNNGC 3 cut(s) 299, 322, 386
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 323
BstSLI GKGCMC 2 cut(s) 131, 486
BstV1I GCAGC 3 cut(s) 309, 337, 373
BstXI CCANNNNNNTGG 2 cut(s) 53, 566
BsuRI GGCC 2 cut(s) 45, 57
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 1 cut(s) 44
Cac8I GCNNGC 3 cut(s) 55, 354, 382
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 94, 414
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 5 cut(s) 47, 317, 427, 456, 507
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 406
EaeI YGGCCR 2 cut(s) 43, 55
Eco130I CCWWGG 2 cut(s) 213, 426
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 2 cut(s) 94, 414
Eco57I CTGAAG 2 cut(s) 110, 171
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 213, 426
EcoT22I ATGCAT 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 2 cut(s) 213, 426
FaeI CATG 5 cut(s) 50, 320, 430, 459, 510
FaiI YATR 9 cut(s) 48, 105, 170, 318, 401, 428, 457, 508, 573
FaqI GGGAC 2 cut(s) 179, 427
FatI CATG 5 cut(s) 46, 316, 426, 455, 506
FauI CCCGC 1 cut(s) 11
Fnu4HI GCNGC 3 cut(s) 323, 326, 387
FokI GGATG 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 323, 326, 387
FspBI CTAG 3 cut(s) 155, 395, 449
GlaI GCGC 1 cut(s) 385
GluI GCNGC 3 cut(s) 323, 326, 387
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 2 cut(s) 45, 57
HapII CCGG 1 cut(s) 306
HhaI GCGC 1 cut(s) 386
Hin1II CATG 5 cut(s) 50, 320, 430, 459, 510
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 183
HpaII CCGG 1 cut(s) 306
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 3 cut(s) 268, 418, 442
HpyCH4V TGCA 6 cut(s) 316, 325, 335, 356, 389, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 322, 386
HpyF3I CTNAG 1 cut(s) 406
Hsp92II CATG 5 cut(s) 50, 320, 430, 459, 510
HspAI GCGC 1 cut(s) 384
LmnI GCTCC 2 cut(s) 26, 105
Lsp1109I GCAGC 3 cut(s) 309, 337, 373
LweI GCATC 3 cut(s) 40, 183, 322
MaeI CTAG 3 cut(s) 155, 395, 449
MboII GAAGA 4 cut(s) 286, 289, 292, 507
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 4 cut(s) 19, 31, 131, 486
MlsI TGGCCA 2 cut(s) 45, 57
MluCI AATT 2 cut(s) 309, 528
MluNI TGGCCA 2 cut(s) 45, 57
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 1 cut(s) 41
Mox20I TGGCCA 2 cut(s) 45, 57
Mph1103I ATGCAT 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 2 cut(s) 45, 57
MseI TTAA 1 cut(s) 470
Msp20I TGGCCA 2 cut(s) 45, 57
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 299, 322, 386
NcoI CCATGG 1 cut(s) 426
NlaIII CATG 5 cut(s) 50, 320, 430, 459, 510
NlaIV GGNNCC 2 cut(s) 28, 415
NsiI ATGCAT 1 cut(s) 337
NspV TTCGAA 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 114
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 3 cut(s) 324, 327, 388
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 28, 415
PspPI GGNCC 2 cut(s) 94, 414
PstI CTGCAG 1 cut(s) 327
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 3 cut(s) 323, 326, 387
Sau96I GGNCC 2 cut(s) 94, 414
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 4 cut(s) 19, 31, 131, 486
SetI ASST 4 cut(s) 63, 102, 187, 437
SfaNI GCATC 3 cut(s) 40, 183, 322
SfcI CTRYAG 1 cut(s) 323
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 2 cut(s) 94, 414
SpeI ACTAGT 1 cut(s) 154
Sse9I AATT 2 cut(s) 309, 528
SsiI CCGC 1 cut(s) 4
SspMI CTAG 3 cut(s) 155, 395, 449
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 2 cut(s) 213, 426
TaaI ACNGT 3 cut(s) 268, 418, 442
TaqI TCGA 1 cut(s) 118
TasI AATT 2 cut(s) 309, 528
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TseI GCWGC 3 cut(s) 322, 325, 386
Van91I CCANNNNNTGG 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 94, 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 3 cut(s) 155, 395, 449
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.