Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009309

Physical Location & Seq

Genomic Coordinates Reverse (-)

14182224 .. 14184852

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAAAGGCTTCTATCCTCTTCATCCCCAACCCTTTTGAAACTCCATCTCAAACCCTCTCCTCTCCTCAATCGACCCGCCCTTATTGACTCGGCCAAACTCGGTTTTCCCGCTTCACAGCTGCCCAATTTCAGACGGGTCGGCTTGGTTTCCTGCAAACATCAAAACCCATCTCCATTTTCTTCTGGTTCTCATTCTTCATCAGCGCCGTGCAACATTCTTCCGTCTCTATTGTCGAACCAGGCCGGATCGCCAAATGGGTCGGAGCCAAAATCCCAGATTCTCAATCAGATCGCAACCGGGGTTCCTAAGCAGCGCAAGGCCATCCCCACCAGAGCGTTCGTTGCGCTTTCTGCTCTTGTTTTGATCTTAATACAACCAGCTTTTGCACCAGCCGCTTTTGCATCCTTTGAAACTGCAACCAACACTGGTAGCCCAGCTGTTGCTATTGGGGGAAGACTGATCCAGACAGAGTTGCTTAGTAGTGCGTGGACTGGTTTCTTCGCCGGTTGCTTACACACATTATCGGGGCCAGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGACGTACCCGCATTGAAAGTGCTTTAGTAGGAGCCCTCTGGGGATGTGGCCATGATGCTGGTCAGGTTATCTTTGGCTTAATATTTTTACTACTAAAGGATCGACTTCATATTGAGATTATCCGAACTTGGGGCACGAGAGTTGTGGGCCTTACCCTACTAGTCATTGGTGGTATGGGTATTAAGGAAGCTTCAGAAGTCCCAACTCCTTGTGTTGCCTTAGAGAATGGCGAGTGTGATGTTAGTGTATACGAGTCTCTAGATAACCCCACAGTTGGGAAGAAGAAGATTGGTTTTGCTACTTTTGCCACTGGAATTGTCCACGGGCTGCAGCCAGATGCATTGATGATGGTCTTGCCAGCCCTCGCTTTGCCATCTCGAGTTGCTGGCGCTGCATTCCTGGTTATGTTTTTAATTGGGACCGTAGTTGCAATGGGAAGCTATACTGTCTTTATAGGTTCATGTAGTCAGGCATTAAAGGATCGAGTGCCCAGGATTACAGAGAAACTGACATGGGCTTCTTCCCTGATTGCAATTGCTCTTGGGTTCGCCATCATCATCAGCCAGTTCTTCGGGTATAGCCTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD_2

Protein Analysis

386

Amino Acids

40.5

Weight (kDa)

9.33

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16800
fragaria_vesca	FvH4_5g30360
malus_domestica	MD05G1122200.v1.1 MD10G1124900.v1.1
prunus_persica	Prupe.7G263700_v2.0.a1 Prupe.8G165900_v2.0.a1
pyrus_communis	pycom05g11620 pycom10g10720
rosa_chinensis	RchiOBHm_Chr7g0224771
rosa_laevigata	RLG00000001855 RLG00000034639
rosa_multiflora	Rmu_co8174708.1_g000001 Rmu_sc0000144.1_g000012 Rmu_sc0010368.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234400
rosa_rugosa	Rorug05G0250800 Rorug07G0225600
rosa_samantha	Rh7AG377500 Rh7BG361700 Rh7CG396300 Rh7DG371400
rosa_wichuraiana	Rw7G031350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	816
AciI	CCGC	4 cut(s)	78, 111, 396, 577
AclWI	GGATC	4 cut(s)	256, 457, 675, 1056
AcoI	YGGCCR	2 cut(s)	93, 616
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	3 cut(s)	697, 842, 843
AgsI	TTSAA	3 cut(s)	40, 413, 584
AhlI	ACTAGT	1 cut(s)	727
AjnI	CCWGG	3 cut(s)	240, 966, 1058
AluBI	AGCT	6 cut(s)	121, 383, 440, 545, 758, 1008
AluI	AGCT	6 cut(s)	121, 383, 440, 545, 758, 1008
Alw26I	GTCTC	2 cut(s)	231, 828
AlwI	GGATC	4 cut(s)	256, 457, 675, 1056
Ama87I	CYCGRG	1 cut(s)	945
AoxI	GGCC	6 cut(s)	93, 243, 321, 530, 616, 715
ApeKI	GCWGC	6 cut(s)	121, 313, 545, 895, 898, 959
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	4 cut(s)	208, 318, 349, 959
AspS9I	GGNCC	3 cut(s)	530, 715, 987
AsuC2I	CCSGG	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	945
AvaII	GGWCC	1 cut(s)	987
BaeGI	GKGCMC	2 cut(s)	704, 1059
BalI	TGGCCA	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	604
BauI	CACGAG	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	463
BbvI	GCAGC	6 cut(s)	108, 325, 532, 882, 910, 946
BccI	CCATC	6 cut(s)	54, 178, 332, 910, 949, 1127
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	3 cut(s)	242, 968, 1060
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	231, 828
BcuI	ACTAGT	1 cut(s)	727
BfaI	CTAG	3 cut(s)	542, 728, 827
BfmI	CTRYAG	1 cut(s)	896
BfoI	RGCGCY	2 cut(s)	209, 960
BisI	GCNGC	7 cut(s)	122, 314, 396, 546, 896, 899, 960
BlsI	GCNGC	7 cut(s)	123, 315, 397, 547, 897, 900, 961
Bme1390I	CCNGG	4 cut(s)	242, 301, 968, 1060
Bme18I	GGWCC	1 cut(s)	987
BmeT110I	CYCGRG	1 cut(s)	945
BmgT120I	GGNCC	3 cut(s)	530, 715, 987
BmiI	GGNNCC	6 cut(s)	267, 306, 531, 555, 601, 988
BmrFI	CCNGG	4 cut(s)	242, 301, 968, 1060
BmsI	GCATC	3 cut(s)	413, 613, 895
BpiI	GAAGAC	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	301
BsaJI	CCNNGG	3 cut(s)	300, 889, 1058
Bsc4I	CCNNNNNNNGG	3 cut(s)	697, 842, 843
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	4 cut(s)	433, 499, 883, 1132
Bse3DI	GCAATG	1 cut(s)	1005
BseBI	CCWGG	3 cut(s)	242, 968, 1060
BseDI	CCNNGG	3 cut(s)	300, 889, 1058
BseGI	GGATG	4 cut(s)	23, 324, 404, 617
BseLI	CCNNNNNNNGG	3 cut(s)	697, 842, 843
BseMI	GCAATG	1 cut(s)	1005
BseNI	ACTGG	4 cut(s)	433, 499, 883, 1132
BseRI	GAGGAG	2 cut(s)	51, 56
BseSI	GKGCMC	2 cut(s)	704, 1059
BseXI	GCAGC	6 cut(s)	108, 325, 532, 882, 910, 946
BseYI	CCCAGC	1 cut(s)	436
BshFI	GGCC	6 cut(s)	95, 245, 323, 532, 618, 717
BsiHKCI	CYCGRG	1 cut(s)	945
BsiSI	CCGG	3 cut(s)	246, 300, 507
BslFI	GGGAC	2 cut(s)	752, 1000
BslI	CCNNNNNNNGG	3 cut(s)	697, 842, 843
BsmAI	GTCTC	2 cut(s)	231, 828
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	752, 1000
BsmI	GAATGC	1 cut(s)	962
BsnI	GGCC	6 cut(s)	95, 245, 323, 532, 618, 717
BsoBI	CYCGRG	1 cut(s)	945
Bsp1286I	GDGCHC	3 cut(s)	604, 704, 1059
Bsp143I	GATC	6 cut(s)	248, 291, 366, 462, 667, 1048
BspACI	CCGC	4 cut(s)	78, 111, 396, 577
BspANI	GGCC	6 cut(s)	95, 245, 323, 532, 618, 717
BspLI	GGNNCC	6 cut(s)	267, 306, 531, 555, 601, 988
BspMAI	CTGCAG	1 cut(s)	900
BspPI	GGATC	4 cut(s)	256, 457, 675, 1056
BsrDI	GCAATG	1 cut(s)	1005
BsrFI	RCCGGY	1 cut(s)	506
BsrI	ACTGG	4 cut(s)	433, 499, 883, 1132
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	3 cut(s)	300, 889, 1058
BssMI	GATC	6 cut(s)	248, 291, 366, 462, 667, 1048
BssNAI	GTATAC	1 cut(s)	817
BssSI	CACGAG	1 cut(s)	703
Bst1107I	GTATAC	1 cut(s)	817
Bst2BI	CACGAG	1 cut(s)	703
Bst2UI	CCWGG	3 cut(s)	242, 968, 1060
Bst4CI	ACNGT	3 cut(s)	841, 991, 1015
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	927, 955
BstDEI	CTNAG	3 cut(s)	309, 479, 787
BstDSI	CCRYGG	1 cut(s)	889
BstF5I	GGATG	4 cut(s)	23, 324, 404, 617
BstH2I	RGCGCY	2 cut(s)	209, 960
BstHHI	GCGC	4 cut(s)	208, 318, 349, 959
BstKTI	GATC	6 cut(s)	251, 294, 369, 465, 670, 1051
BstMAI	GTCTC	2 cut(s)	231, 828
BstMBI	GATC	6 cut(s)	248, 291, 366, 462, 667, 1048
BstMWI	GCNNNNNNNGC	7 cut(s)	344, 353, 395, 401, 551, 872, 959
BstNI	CCWGG	3 cut(s)	242, 968, 1060
BstSCI	CCNGG	4 cut(s)	240, 299, 966, 1058
BstSFI	CTRYAG	1 cut(s)	896
BstSLI	GKGCMC	2 cut(s)	704, 1059
BstV1I	GCAGC	6 cut(s)	108, 325, 532, 882, 910, 946
BstV2I	GAAGAC	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	626
BstZ17I	GTATAC	1 cut(s)	817
BsuRI	GGCC	6 cut(s)	95, 245, 323, 532, 618, 717
BtgI	CCRYGG	1 cut(s)	889
BtsCI	GGATG	4 cut(s)	23, 324, 404, 617
BtsIMutI	CAGTG	2 cut(s)	426, 876
Cac8I	GCNNGC	2 cut(s)	927, 955
CfoI	GCGC	4 cut(s)	208, 318, 349, 959
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	3 cut(s)	530, 715, 987
Csp6I	GTAC	1 cut(s)	573
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviAII	CATG	3 cut(s)	620, 1029, 1080
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	3 cut(s)	309, 479, 787
DpnI	GATC	6 cut(s)	250, 293, 368, 464, 669, 1050
DpnII	GATC	6 cut(s)	248, 291, 366, 462, 667, 1048
EaeI	YGGCCR	2 cut(s)	93, 616
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	987
Eco57I	CTGAAG	1 cut(s)	744
Eco88I	CYCGRG	1 cut(s)	945
EcoRII	CCWGG	3 cut(s)	240, 966, 1058
EcoT22I	ATGCAT	1 cut(s)	910
EcoT38I	GRGCYC	1 cut(s)	604
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	3 cut(s)	623, 1032, 1083
FaqI	GGGAC	2 cut(s)	752, 1000
FatI	CATG	3 cut(s)	619, 1028, 1079
FauI	CCCGC	3 cut(s)	85, 118, 584
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	7 cut(s)	122, 314, 396, 546, 896, 899, 960
FokI	GGATG	4 cut(s)	10, 311, 391, 624
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	7 cut(s)	122, 314, 396, 546, 896, 899, 960
FspBI	CTAG	3 cut(s)	542, 728, 827
GlaI	GCGC	4 cut(s)	207, 317, 348, 958
GluI	GCNGC	7 cut(s)	122, 314, 396, 546, 896, 899, 960
GsaI	CCCAGC	1 cut(s)	440
HaeII	RGCGCY	2 cut(s)	209, 960
HaeIII	GGCC	6 cut(s)	95, 245, 323, 532, 618, 717
HapII	CCGG	3 cut(s)	246, 300, 507
HhaI	GCGC	4 cut(s)	208, 318, 349, 959
Hin1II	CATG	3 cut(s)	623, 1032, 1083
Hin6I	GCGC	4 cut(s)	206, 316, 347, 957
HinP1I	GCGC	4 cut(s)	206, 316, 347, 957
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	3 cut(s)	89, 280, 821
HpaII	CCGG	3 cut(s)	246, 300, 507
Hpy166II	GTNNAC	3 cut(s)	492, 817, 889
Hpy188I	TCNGA	5 cut(s)	134, 265, 291, 692, 763
Hpy188III	TCNNGA	3 cut(s)	466, 827, 945
Hpy8I	GTNNAC	3 cut(s)	492, 817, 889
HpyCH4III	ACNGT	3 cut(s)	841, 991, 1015
HpyCH4IV	ACGT	1 cut(s)	571
HpyF10VI	GCNNNNNNNGC	7 cut(s)	344, 353, 395, 401, 551, 872, 959
HpyF3I	CTNAG	3 cut(s)	309, 479, 787
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	3 cut(s)	623, 1032, 1083
HspAI	GCGC	4 cut(s)	206, 316, 347, 957
Kzo9I	GATC	6 cut(s)	248, 291, 366, 462, 667, 1048
LmnI	GCTCC	3 cut(s)	265, 559, 599
Lsp1109I	GCAGC	6 cut(s)	108, 325, 532, 882, 910, 946
LweI	GCATC	3 cut(s)	413, 613, 895
MaeI	CTAG	3 cut(s)	542, 728, 827
MaeII	ACGT	1 cut(s)	571
MalI	GATC	6 cut(s)	250, 293, 368, 464, 669, 1050
MboI	GATC	6 cut(s)	248, 291, 366, 462, 667, 1048
MfeI	CAATTG	2 cut(s)	564, 1101
MhlI	GDGCHC	3 cut(s)	604, 704, 1059
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	5 cut(s)	127, 564, 882, 981, 1101
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	2 cut(s)	83, 830
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	6 cut(s)	28, 67, 72, 77, 614, 941
Mox20I	TGGCCA	1 cut(s)	618
Mph1103I	ATGCAT	1 cut(s)	910
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	5 cut(s)	371, 647, 750, 980, 1043
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	2 cut(s)	121, 440
MspI	CCGG	3 cut(s)	246, 300, 507
MspR9I	CCNGG	4 cut(s)	242, 301, 968, 1060
MunI	CAATTG	2 cut(s)	564, 1101
Mva1269I	GAATGC	1 cut(s)	962
MvaI	CCWGG	3 cut(s)	242, 968, 1060
MwoI	GCNNNNNNNGC	7 cut(s)	344, 353, 395, 401, 551, 872, 959
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	6 cut(s)	248, 291, 366, 462, 667, 1048
NlaIII	CATG	3 cut(s)	623, 1032, 1083
NlaIV	GGNNCC	6 cut(s)	267, 306, 531, 555, 601, 988
NmeAIII	GCCGAG	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	910
PaeR7I	CTCGAG	1 cut(s)	945
PctI	GAATGC	1 cut(s)	962
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	7 cut(s)	123, 315, 397, 547, 897, 900, 961
PleI	GAGTC	2 cut(s)	83, 829
PpsI	GAGTC	2 cut(s)	83, 829
Psp6I	CCWGG	3 cut(s)	240, 966, 1058
PspFI	CCCAGC	1 cut(s)	436
PspGI	CCWGG	3 cut(s)	240, 966, 1058
PspN4I	GGNNCC	6 cut(s)	267, 306, 531, 555, 601, 988
PspPI	GGNCC	3 cut(s)	530, 715, 987
PstI	CTGCAG	1 cut(s)	900
PvuII	CAGCTG	2 cut(s)	121, 440
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SaqAI	TTAA	5 cut(s)	371, 647, 750, 980, 1043
SatI	GCNGC	7 cut(s)	122, 314, 396, 546, 896, 899, 960
Sau3AI	GATC	6 cut(s)	248, 291, 366, 462, 667, 1048
Sau96I	GGNCC	3 cut(s)	530, 715, 987
SchI	GAGTC	2 cut(s)	83, 830
ScrFI	CCNGG	4 cut(s)	242, 301, 968, 1060
SduI	GDGCHC	3 cut(s)	604, 704, 1059
SfaNI	GCATC	3 cut(s)	413, 613, 895
SfcI	CTRYAG	1 cut(s)	896
Sfr274I	CTCGAG	1 cut(s)	945
SinI	GGWCC	1 cut(s)	987
SlaI	CTCGAG	1 cut(s)	945
SmlI	CTYRAG	1 cut(s)	945
SmoI	CTYRAG	1 cut(s)	945
SpeI	ACTAGT	1 cut(s)	727
Sse9I	AATT	5 cut(s)	127, 564, 882, 981, 1101
SsiI	CCGC	4 cut(s)	78, 111, 396, 577
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	3 cut(s)	542, 728, 827
StyD4I	CCNGG	4 cut(s)	240, 299, 966, 1058
TaaI	ACNGT	3 cut(s)	841, 991, 1015
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	5 cut(s)	73, 236, 670, 946, 1051
TasI	AATT	5 cut(s)	127, 564, 882, 981, 1101
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	5 cut(s)	371, 647, 750, 980, 1043
Tru9I	TTAA	5 cut(s)	371, 647, 750, 980, 1043
TscAI	CASTG	2 cut(s)	433, 883
TseI	GCWGC	6 cut(s)	121, 313, 545, 895, 898, 959
TspDTI	ATGAA	4 cut(s)	12, 189, 665, 1017
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	433, 883
VpaK11BI	GGWCC	1 cut(s)	987
XbaI	TCTAGA	1 cut(s)	826
XhoI	CTCGAG	1 cut(s)	945
XmiI	GTMKAC	1 cut(s)	816
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	3 cut(s)	542, 728, 827
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.