Rh7BG361700

Cytochrome C biogenesis protein transmembrane region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009309
Physical Location & Seq
Forward (+)
38321636 .. 38324928
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG361700.1

Sequence Viewer

Length: 1137 bp
ATGGAAAGGCTTCTGTCCTCTTCATCCCCAACCCCTAAACTCCATCTTAAACAACCCTCTTCCTTTCACCACCCACTCGCTCGTCTCGACTTCCCCAGACTCAATTTCCCCTCTTCAAAGCTGCCCAGTTTGAGACGGGCCGCCGCCGTCTCTGTTTCCTGCAAACATCAAAACCCATCTCCATTTTCTTCGCCGGAGGGTTTGCCGTCGAACCGGGTCGGGTCGGGGACAAATGGGTCGGCGCCAAATCCCCTGCTTCTCAATCAGATCGCAGATGGCGCTTCTAAGCAACGCAAGGCCATCACCACTGGGGCATTTGTTGCGCTTTCTGCTCTTATTTTGGTCTTAGTACAACCTGCCTTTGCACCAGCGGCTCTTGCTTCTTTTCAAACTGCAACTAAGACAGGTGGTCCAGCTGCTGTTGCAGTTGGGGGAAGATTCATCCAGACTGAATTACTTAGTAGTGCATGGACCGGTTTCTTTGCTGGTTGCTTGCACACATTATCAGGGCCTGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGGCGTACCCGCATTGAAAGTGCTCTTGTTGGAGCCCTCTGGGGATGTGGCCATGATGCTGGCCAGGTTATCTTTGGATTAATATTTCTACTACTGAAGGACCGGCTCCATATTGAAGTTATTCGAACATGGGGCACAAGAGTTGTTGGGCTTACTTTACTAATTATTGGTGCTATGGGCATTAAGGAAGCTTCAGAAGTCCCGAGTCCTTGTGTTGCCTTGGAGAATGGCGAGTGTGATGTTAGTGTGTACGAAACTCTTGATAACCCAACTGTTGGGAAGAAGAAGATTGGTTTTGCTACTTTTGCCACCGGAATTGTGCATGGGCTGCAGCCAGATGCATTGATGATGGTGTTGCCTGCACTTGCTTTGCCATCTCGTGTTGCTGGCGCTGCATTTCTAGTTATGTTCTTAGTTGGGACCGTAGTTGCCATGGGAAGCTACACAGTCTTTCTAGGCTCATGTAGTGAGGCATTAAAGGACAGAGTGCCCAGAATAACAGAGAAACTGACATGGGCTTCTTCCCTGATTGCAATTGCTCTTGGATTTGCCATTATTATCAGCCAGTTCTTTGGGTATAGCCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DsbD_2

Protein Analysis

378

Amino Acids

39.71

Weight (kDa)

9.41

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_2 PF13386 206 - 350 4.1e-06 Cytochrome C biogenesis protein transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 821
AciI CCGC 4 cut(s) 141, 144, 371, 556
AcoI YGGCCR 2 cut(s) 595, 607
AcuI CTGAAG 2 cut(s) 662, 723
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 3 cut(s) 351, 553, 797
AfiI CCNNNNNNNGG 1 cut(s) 821
AgeI ACCGGT 1 cut(s) 473
AgsI TTSAA 4 cut(s) 117, 389, 563, 662
AhdI GACNNNNNGTC 1 cut(s) 408
AjnI CCWGG 1 cut(s) 609
AluBI AGCT 5 cut(s) 121, 416, 524, 737, 987
AluI AGCT 5 cut(s) 121, 416, 524, 737, 987
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 3 cut(s) 89, 127, 154
AlwNI CAGNNNCTG 2 cut(s) 419, 512
Ama87I CYCGRG 1 cut(s) 748
AoxI GGCC 5 cut(s) 138, 297, 509, 595, 607
ApeKI GCWGC 6 cut(s) 121, 416, 524, 874, 877, 938
AseI ATTAAT 1 cut(s) 626
AsiGI ACCGGT 1 cut(s) 473
Asp700I GAANNNNTTC 2 cut(s) 9, 666
AspLEI GCGC 4 cut(s) 244, 281, 325, 938
AspS9I GGNCC 6 cut(s) 138, 410, 471, 509, 646, 966
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 59, 295
AsuII TTCGAA 1 cut(s) 670
AvaI CYCGRG 1 cut(s) 748
AvaII GGWCC 4 cut(s) 410, 471, 646, 966
BaeGI GKGCMC 2 cut(s) 683, 1038
BalI TGGCCA 2 cut(s) 597, 609
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 583
BauI CACGAG 1 cut(s) 924
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 6 cut(s) 108, 403, 511, 861, 889, 925
BccI CCATC 6 cut(s) 51, 184, 269, 308, 889, 928
BceAI ACGGC 2 cut(s) 131, 190
BciT130I CCWGG 1 cut(s) 611
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 3 cut(s) 89, 127, 154
BfaI CTAG 3 cut(s) 521, 947, 1001
BfmI CTRYAG 1 cut(s) 875
BfoI RGCGCY 3 cut(s) 245, 282, 939
BfuAI ACCTGC 1 cut(s) 364
BisI GCNGC 9 cut(s) 122, 141, 144, 372, 417, 525, 875, 878, 939
BlsI GCNGC 9 cut(s) 123, 142, 145, 373, 418, 526, 876, 879, 940
Bme1390I CCNGG 2 cut(s) 215, 611
Bme18I GGWCC 4 cut(s) 410, 471, 646, 966
BmeRI GACNNNNNGTC 1 cut(s) 408
BmeT110I CYCGRG 1 cut(s) 748
BmgT120I GGNCC 6 cut(s) 138, 410, 471, 509, 646, 966
BmiI GGNNCC 5 cut(s) 243, 534, 580, 653, 967
BmrFI CCNGG 2 cut(s) 215, 611
BmrI ACTGGG 2 cut(s) 120, 318
BmsI GCATC 2 cut(s) 592, 874
BmuI ACTGGG 2 cut(s) 120, 318
Bpu14I TTCGAA 1 cut(s) 670
BpuMI CCSGG 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 765, 978
BsaWI WCCGGW 2 cut(s) 473, 857
Bsc4I CCNNNNNNNGG 1 cut(s) 821
Bse118I RCCGGY 2 cut(s) 473, 648
Bse1I ACTGG 3 cut(s) 126, 313, 1111
BseBI CCWGG 1 cut(s) 611
BseDI CCNNGG 2 cut(s) 765, 978
BseGI GGATG 3 cut(s) 23, 441, 596
BseLI CCNNNNNNNGG 1 cut(s) 821
BseNI ACTGG 3 cut(s) 126, 313, 1111
BseSI GKGCMC 2 cut(s) 683, 1038
BseXI GCAGC 6 cut(s) 108, 403, 511, 861, 889, 925
BsgI GTGCAG 1 cut(s) 891
BshFI GGCC 5 cut(s) 140, 299, 511, 597, 609
BshNI GGYRCC 1 cut(s) 241
BshTI ACCGGT 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 571
BsiHKCI CYCGRG 1 cut(s) 748
BsiSI CCGG 5 cut(s) 194, 214, 474, 649, 858
BslFI GGGAC 3 cut(s) 241, 731, 979
BslI CCNNNNNNNGG 1 cut(s) 821
BsmAI GTCTC 3 cut(s) 89, 127, 154
BsmBI CGTCTC 3 cut(s) 89, 127, 154
BsmFI GGGAC 3 cut(s) 241, 731, 979
BsnI GGCC 5 cut(s) 140, 299, 511, 597, 609
BsoBI CYCGRG 1 cut(s) 748
Bsp119I TTCGAA 1 cut(s) 670
Bsp1286I GDGCHC 4 cut(s) 571, 583, 683, 1038
Bsp143I GATC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 978
BspACI CCGC 4 cut(s) 141, 144, 371, 556
BspANI GGCC 5 cut(s) 140, 299, 511, 597, 609
BspLI GGNNCC 5 cut(s) 243, 534, 580, 653, 967
BspMAI CTGCAG 1 cut(s) 879
BspMI ACCTGC 1 cut(s) 364
BspT104I TTCGAA 1 cut(s) 670
BspT107I GGYRCC 1 cut(s) 241
BsrFI RCCGGY 2 cut(s) 473, 648
BsrI ACTGG 3 cut(s) 126, 313, 1111
BssAI RCCGGY 2 cut(s) 473, 648
BssECI CCNNGG 2 cut(s) 765, 978
BssMI GATC 1 cut(s) 267
BssNI GRCGYC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 924
BssT1I CCWWGG 2 cut(s) 765, 978
Bst2BI CACGAG 1 cut(s) 924
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 3 cut(s) 820, 970, 994
Bst6I CTCTTC 3 cut(s) 25, 64, 118
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 2 cut(s) 320, 874
BstBI TTCGAA 1 cut(s) 670
BstC8I GCNNGC 4 cut(s) 494, 607, 906, 934
BstDEI CTNAG 5 cut(s) 285, 346, 399, 458, 958
BstDSI CCRYGG 1 cut(s) 978
BstF5I GGATG 3 cut(s) 23, 441, 596
BstH2I RGCGCY 3 cut(s) 245, 282, 939
BstHHI GCGC 4 cut(s) 244, 281, 325, 938
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 3 cut(s) 89, 127, 154
BstMBI GATC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 611
BstSCI CCNGG 2 cut(s) 213, 609
BstSFI CTRYAG 1 cut(s) 875
BstSLI GKGCMC 2 cut(s) 683, 1038
BstV1I GCAGC 6 cut(s) 108, 403, 511, 861, 889, 925
BstXI CCANNNNNNTGG 2 cut(s) 605, 1118
BsuRI GGCC 5 cut(s) 140, 299, 511, 597, 609
BtgI CCRYGG 1 cut(s) 978
BtsCI GGATG 3 cut(s) 23, 441, 596
BtsIMutI CAGTG 1 cut(s) 306
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 4 cut(s) 494, 607, 906, 934
CaiI CAGNNNCTG 2 cut(s) 419, 512
CfoI GCGC 4 cut(s) 244, 281, 325, 938
Cfr10I RCCGGY 2 cut(s) 473, 648
Cfr13I GGNCC 6 cut(s) 138, 410, 471, 509, 646, 966
Csp6I GTAC 3 cut(s) 350, 552, 796
CspAI ACCGGT 1 cut(s) 473
CspCI CAANNNNNGTGG 2 cut(s) 844, 879
CviAII CATG 7 cut(s) 468, 599, 675, 869, 979, 1008, 1059
CviQI GTAC 3 cut(s) 350, 552, 796
DdeI CTNAG 5 cut(s) 285, 346, 399, 458, 958
DinI GGCGCC 1 cut(s) 243
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DrdI GACNNNNNNGTC 1 cut(s) 235
DriI GACNNNNNGTC 1 cut(s) 408
DseDI GACNNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 2 cut(s) 595, 607
Eam1104I CTCTTC 3 cut(s) 25, 64, 118
Eam1105I GACNNNNNGTC 1 cut(s) 408
EarI CTCTTC 3 cut(s) 25, 64, 118
Eco130I CCWWGG 2 cut(s) 765, 978
Eco24I GRGCYC 1 cut(s) 583
Eco47I GGWCC 4 cut(s) 410, 471, 646, 966
Eco57I CTGAAG 2 cut(s) 662, 723
Eco88I CYCGRG 1 cut(s) 748
EcoO109I RGGNCCY 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 609
EcoT14I CCWWGG 2 cut(s) 765, 978
EcoT22I ATGCAT 1 cut(s) 889
EcoT38I GRGCYC 1 cut(s) 583
EgeI GGCGCC 1 cut(s) 243
EheI GGCGCC 1 cut(s) 243
ErhI CCWWGG 2 cut(s) 765, 978
Esp3I CGTCTC 3 cut(s) 89, 127, 154
FaeI CATG 7 cut(s) 471, 602, 678, 872, 982, 1011, 1062
FaqI GGGAC 3 cut(s) 241, 731, 979
FatI CATG 7 cut(s) 467, 598, 674, 868, 978, 1007, 1058
FauI CCCGC 1 cut(s) 563
Fnu4HI GCNGC 9 cut(s) 122, 141, 144, 372, 417, 525, 875, 878, 939
FokI GGATG 3 cut(s) 10, 428, 603
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 9 cut(s) 122, 141, 144, 372, 417, 525, 875, 878, 939
FspBI CTAG 3 cut(s) 521, 947, 1001
GlaI GCGC 4 cut(s) 243, 280, 324, 937
GluI GCNGC 9 cut(s) 122, 141, 144, 372, 417, 525, 875, 878, 939
HaeII RGCGCY 3 cut(s) 245, 282, 939
HaeIII GGCC 5 cut(s) 140, 299, 511, 597, 609
HapII CCGG 5 cut(s) 194, 214, 474, 649, 858
HhaI GCGC 4 cut(s) 244, 281, 325, 938
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 7 cut(s) 471, 602, 678, 872, 982, 1011, 1062
Hin6I GCGC 4 cut(s) 242, 279, 323, 936
HinP1I GCGC 4 cut(s) 242, 279, 323, 936
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 3 cut(s) 99, 438, 751
HpaII CCGG 5 cut(s) 194, 214, 474, 649, 858
HphI GGTGA 2 cut(s) 59, 295
Hpy166II GTNNAC 1 cut(s) 796
Hpy188I TCNGA 2 cut(s) 267, 742
Hpy188III TCNNGA 4 cut(s) 86, 445, 748, 806
Hpy8I GTNNAC 1 cut(s) 796
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 3 cut(s) 820, 970, 994
HpyF3I CTNAG 5 cut(s) 285, 346, 399, 458, 958
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 7 cut(s) 471, 602, 678, 872, 982, 1011, 1062
HspAI GCGC 4 cut(s) 242, 279, 323, 936
KasI GGCGCC 1 cut(s) 241
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 3 cut(s) 538, 578, 657
Lsp1109I GCAGC 6 cut(s) 108, 403, 511, 861, 889, 925
LweI GCATC 2 cut(s) 592, 874
MaeI CTAG 3 cut(s) 521, 947, 1001
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 9 cut(s) 12, 51, 105, 180, 447, 838, 841, 844, 1059
MfeI CAATTG 2 cut(s) 543, 1080
MhlI GDGCHC 4 cut(s) 571, 583, 683, 1038
MlsI TGGCCA 2 cut(s) 597, 609
MluCI AATT 6 cut(s) 103, 452, 543, 708, 861, 1080
MluNI TGGCCA 2 cut(s) 597, 609
Mly113I GGCGCC 1 cut(s) 242
MlyI GAGTC 2 cut(s) 93, 760
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 6 cut(s) 28, 67, 121, 190, 593, 1009
Mox20I TGGCCA 2 cut(s) 597, 609
Mph1103I ATGCAT 1 cut(s) 889
MroXI GAANNNNTTC 2 cut(s) 9, 666
MscI TGGCCA 2 cut(s) 597, 609
MseI TTAA 4 cut(s) 48, 626, 729, 1022
Msp20I TGGCCA 2 cut(s) 597, 609
MspA1I CMGCKG 2 cut(s) 371, 416
MspI CCGG 5 cut(s) 194, 214, 474, 649, 858
MspR9I CCNGG 2 cut(s) 215, 611
MunI CAATTG 2 cut(s) 543, 1080
MvaI CCWGG 1 cut(s) 611
NarI GGCGCC 1 cut(s) 242
NciI CCSGG 1 cut(s) 215
NcoI CCATGG 1 cut(s) 978
NdeII GATC 1 cut(s) 267
NlaIII CATG 7 cut(s) 471, 602, 678, 872, 982, 1011, 1062
NlaIV GGNNCC 5 cut(s) 243, 534, 580, 653, 967
NsiI ATGCAT 1 cut(s) 889
NspV TTCGAA 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 2 cut(s) 9, 666
PfeI GAWTC 1 cut(s) 438
PflMI CCANNNNNTGG 1 cut(s) 821
PinAI ACCGGT 1 cut(s) 473
PkrI GCNGC 9 cut(s) 123, 142, 145, 373, 418, 526, 876, 879, 940
PleI GAGTC 2 cut(s) 93, 759
PluTI GGCGCC 1 cut(s) 245
PpsI GAGTC 2 cut(s) 93, 759
PshBI ATTAAT 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 609
PspGI CCWGG 1 cut(s) 609
PspN4I GGNNCC 5 cut(s) 243, 534, 580, 653, 967
PspPI GGNCC 6 cut(s) 138, 410, 471, 509, 646, 966
PstI CTGCAG 1 cut(s) 879
PstNI CAGNNNCTG 2 cut(s) 419, 512
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 3 cut(s) 351, 553, 797
RsaNI GTAC 3 cut(s) 350, 552, 796
SaqAI TTAA 4 cut(s) 48, 626, 729, 1022
SatI GCNGC 9 cut(s) 122, 141, 144, 372, 417, 525, 875, 878, 939
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 6 cut(s) 138, 410, 471, 509, 646, 966
SchI GAGTC 2 cut(s) 93, 760
ScrFI CCNGG 2 cut(s) 215, 611
SduI GDGCHC 4 cut(s) 571, 583, 683, 1038
SetI ASST 9 cut(s) 123, 358, 409, 418, 522, 526, 615, 739, 989
SfaNI GCATC 2 cut(s) 592, 874
SfcI CTRYAG 1 cut(s) 875
SfoI GGCGCC 1 cut(s) 243
SfuI TTCGAA 1 cut(s) 670
SinI GGWCC 4 cut(s) 410, 471, 646, 966
Sse9I AATT 6 cut(s) 103, 452, 543, 708, 861, 1080
SsiI CCGC 4 cut(s) 141, 144, 371, 556
SspDI GGCGCC 1 cut(s) 241
SspI AATATT 1 cut(s) 630
SspMI CTAG 3 cut(s) 521, 947, 1001
StyD4I CCNGG 2 cut(s) 213, 609
StyI CCWWGG 2 cut(s) 765, 978
TaaI ACNGT 3 cut(s) 820, 970, 994
TaqI TCGA 3 cut(s) 87, 209, 670
TasI AATT 6 cut(s) 103, 452, 543, 708, 861, 1080
TatI WGTACW 1 cut(s) 349
TauI GCSGC 3 cut(s) 143, 146, 374
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 4 cut(s) 48, 626, 729, 1022
Tru9I TTAA 4 cut(s) 48, 626, 729, 1022
TscAI CASTG 1 cut(s) 313
TseI GCWGC 6 cut(s) 121, 416, 524, 874, 877, 938
TspDTI ATGAA 2 cut(s) 12, 430
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 821
VpaK11BI GGWCC 4 cut(s) 410, 471, 646, 966
VspI ATTAAT 1 cut(s) 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 617
XmnI GAANNNNTTC 2 cut(s) 9, 666
XspI CTAG 3 cut(s) 521, 947, 1001
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.