Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010368.1

Orthogroup ID

OG0009309

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1814

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010368.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

gccatcaccactggggcatttgttgcgctttctgctcttattttggtcttagtacaacctgcctttgcaccagcggctcttgcttcttttcaaactgcaactaagacaggtggtccagctgctgttgcagttgggggaagactcatccagactgaattacttagtagtgcatggaccggtttctttgctggttgcctgcacacattatcagggcctgaccacctagctgctttggctccactctcaattgggcgtacccgcattgaaagtgctcttgttggagccctctggggatgtggccatgatgctggccaggttatctttggattagtatttctactactgaaggaccagctccatattgaagttattcgaacttggggcacaagagttgttgggcttactttactagttattggtgctatgggcatcaaggaagcttcagaagtcccaagtccttgtgttgccttggagaatggcgagtgtgatgttagtgtgtacgaaactcttgataacccaactgttgggaagaagaagattggatttgctacttttgccaccggaattgtgcatgggctgcagccagatgcattgatgatggtgttgcctgcacttgctttgccatctcgtgttgctggcgctgcatttctagttatgttcttagttgggaccgtagttgccatgggaagctacacagtctttctaggctcatgtagtcaggcattaaaggacagagtgcccagaataacagagaaactgacatgggcttcttccctgattgcaattgctcttggatttgccattattatcagccagttctttgggtatagcctgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD_2

Protein Analysis

279

Amino Acids

29.0

Weight (kDa)

7.14

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16800
fragaria_vesca	FvH4_5g30360
malus_domestica	MD05G1122200.v1.1 MD10G1124900.v1.1
prunus_persica	Prupe.7G263700_v2.0.a1 Prupe.8G165900_v2.0.a1
pyrus_communis	pycom05g11620 pycom10g10720
rosa_chinensis	RchiOBHm_Chr7g0224771
rosa_laevigata	RLG00000001855 RLG00000034639
rosa_multiflora	Rmu_co8174708.1_g000001 Rmu_sc0000144.1_g000012 Rmu_sc0010368.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234400
rosa_rugosa	Rorug05G0250800 Rorug07G0225600
rosa_samantha	Rh7AG377500 Rh7BG361700 Rh7CG396300 Rh7DG371400
rosa_wichuraiana	Rw7G031350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccB7I	CCANNNNNTGG	1 cut(s)	524
AciI	CCGC	2 cut(s)	74, 259
AcoI	YGGCCR	2 cut(s)	298, 310
AcuI	CTGAAG	2 cut(s)	365, 426
AfaI	GTAC	3 cut(s)	54, 256, 500
AfiI	CCNNNNNNNGG	1 cut(s)	524
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	92, 266, 365
AhdI	GACNNNNNGTC	1 cut(s)	111
AhlI	ACTAGT	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	5 cut(s)	119, 227, 355, 440, 690
AluI	AGCT	5 cut(s)	119, 227, 355, 440, 690
Alw21I	GWGCWC	1 cut(s)	274
AlwNI	CAGNNNCTG	2 cut(s)	122, 215
AoxI	GGCC	3 cut(s)	212, 298, 310
ApeKI	GCWGC	5 cut(s)	119, 227, 577, 580, 641
AsiGI	ACCGGT	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	28, 641
AspS9I	GGNCC	5 cut(s)	113, 174, 212, 349, 669
AsuII	TTCGAA	1 cut(s)	373
AvaII	GGWCC	4 cut(s)	113, 174, 349, 669
BaeGI	GKGCMC	2 cut(s)	386, 741
BalI	TGGCCA	2 cut(s)	300, 312
BanII	GRGCYC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	5 cut(s)	106, 214, 564, 592, 628
BccI	CCATC	3 cut(s)	11, 592, 631
BciT130I	CCWGG	1 cut(s)	314
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	4 cut(s)	224, 410, 650, 704
BfmI	CTRYAG	1 cut(s)	578
BfoI	RGCGCY	1 cut(s)	642
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	6 cut(s)	75, 120, 228, 578, 581, 642
BlsI	GCNGC	6 cut(s)	76, 121, 229, 579, 582, 643
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	4 cut(s)	113, 174, 349, 669
BmeRI	GACNNNNNGTC	1 cut(s)	111
BmgT120I	GGNCC	5 cut(s)	113, 174, 212, 349, 669
BmiI	GGNNCC	3 cut(s)	237, 283, 670
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	3 cut(s)	295, 438, 577
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	468, 681
BsaWI	WCCGGW	2 cut(s)	176, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	16, 814
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	468, 681
BseGI	GGATG	2 cut(s)	144, 299
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseNI	ACTGG	2 cut(s)	16, 814
BseSI	GKGCMC	2 cut(s)	386, 741
BseXI	GCAGC	5 cut(s)	106, 214, 564, 592, 628
BsgI	GTGCAG	2 cut(s)	182, 594
BshFI	GGCC	3 cut(s)	214, 300, 312
BshTI	ACCGGT	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	177, 561
BslFI	GGGAC	2 cut(s)	434, 682
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmFI	GGGAC	2 cut(s)	434, 682
BsnI	GGCC	3 cut(s)	214, 300, 312
Bsp119I	TTCGAA	1 cut(s)	373
Bsp1286I	GDGCHC	4 cut(s)	274, 286, 386, 741
Bsp19I	CCATGG	1 cut(s)	681
BspACI	CCGC	2 cut(s)	74, 259
BspANI	GGCC	3 cut(s)	214, 300, 312
BspLI	GGNNCC	3 cut(s)	237, 283, 670
BspMAI	CTGCAG	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	16, 814
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	468, 681
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	2 cut(s)	468, 681
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	523, 673, 697
BstAPI	GCANNNNNTGC	2 cut(s)	23, 577
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	4 cut(s)	197, 310, 609, 637
BstDEI	CTNAG	4 cut(s)	49, 102, 161, 661
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	2 cut(s)	144, 299
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	2 cut(s)	28, 641
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 32, 74, 80, 125, 233, 554, 577, 641
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	578
BstSLI	GKGCMC	2 cut(s)	386, 741
BstV1I	GCAGC	5 cut(s)	106, 214, 564, 592, 628
BstV2I	GAAGAC	1 cut(s)	145
BstXI	CCANNNNNNTGG	2 cut(s)	308, 821
BsuRI	GGCC	3 cut(s)	214, 300, 312
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	2 cut(s)	144, 299
BtsIMutI	CAGTG	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	4 cut(s)	197, 310, 609, 637
CaiI	CAGNNNCTG	2 cut(s)	122, 215
CfoI	GCGC	2 cut(s)	28, 641
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	5 cut(s)	113, 174, 212, 349, 669
Csp6I	GTAC	3 cut(s)	53, 255, 499
CspAI	ACCGGT	1 cut(s)	176
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviAII	CATG	6 cut(s)	171, 302, 572, 682, 711, 762
CviQI	GTAC	3 cut(s)	53, 255, 499
DdeI	CTNAG	4 cut(s)	49, 102, 161, 661
DriI	GACNNNNNGTC	1 cut(s)	111
EaeI	YGGCCR	2 cut(s)	298, 310
Eam1105I	GACNNNNNGTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	468, 681
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	4 cut(s)	113, 174, 349, 669
Eco57I	CTGAAG	2 cut(s)	365, 426
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	468, 681
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	2 cut(s)	468, 681
FaeI	CATG	6 cut(s)	174, 305, 575, 685, 714, 765
FaqI	GGGAC	2 cut(s)	434, 682
FatI	CATG	6 cut(s)	170, 301, 571, 681, 710, 761
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	6 cut(s)	75, 120, 228, 578, 581, 642
FokI	GGATG	2 cut(s)	131, 306
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	6 cut(s)	75, 120, 228, 578, 581, 642
FspBI	CTAG	4 cut(s)	224, 410, 650, 704
GlaI	GCGC	2 cut(s)	27, 640
GluI	GCNGC	6 cut(s)	75, 120, 228, 578, 581, 642
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	3 cut(s)	214, 300, 312
HapII	CCGG	2 cut(s)	177, 561
HhaI	GCGC	2 cut(s)	28, 641
Hin1II	CATG	6 cut(s)	174, 305, 575, 685, 714, 765
Hin6I	GCGC	2 cut(s)	26, 639
HinP1I	GCGC	2 cut(s)	26, 639
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	2 cut(s)	177, 561
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	2 cut(s)	148, 509
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	3 cut(s)	523, 673, 697
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 32, 74, 80, 125, 233, 554, 577, 641
HpyF3I	CTNAG	4 cut(s)	49, 102, 161, 661
Hsp92II	CATG	6 cut(s)	174, 305, 575, 685, 714, 765
HspAI	GCGC	2 cut(s)	26, 639
LmnI	GCTCC	3 cut(s)	241, 281, 360
Lsp1109I	GCAGC	5 cut(s)	106, 214, 564, 592, 628
LweI	GCATC	3 cut(s)	295, 438, 577
MaeI	CTAG	4 cut(s)	224, 410, 650, 704
MboII	GAAGA	5 cut(s)	150, 541, 544, 547, 762
MfeI	CAATTG	2 cut(s)	246, 783
MhlI	GDGCHC	4 cut(s)	274, 286, 386, 741
MlsI	TGGCCA	2 cut(s)	300, 312
MluCI	AATT	4 cut(s)	155, 246, 564, 783
MluNI	TGGCCA	2 cut(s)	300, 312
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	1 cut(s)	296
Mox20I	TGGCCA	2 cut(s)	300, 312
Mph1103I	ATGCAT	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	369
MscI	TGGCCA	2 cut(s)	300, 312
MseI	TTAA	1 cut(s)	725
Msp20I	TGGCCA	2 cut(s)	300, 312
MspA1I	CMGCKG	2 cut(s)	74, 119
MspI	CCGG	2 cut(s)	177, 561
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	2 cut(s)	246, 783
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	9 cut(s)	23, 32, 74, 80, 125, 233, 554, 577, 641
NcoI	CCATGG	1 cut(s)	681
NlaIII	CATG	6 cut(s)	174, 305, 575, 685, 714, 765
NlaIV	GGNNCC	3 cut(s)	237, 283, 670
NsiI	ATGCAT	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	369
PflMI	CCANNNNNTGG	1 cut(s)	524
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	6 cut(s)	76, 121, 229, 579, 582, 643
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	237, 283, 670
PspPI	GGNCC	5 cut(s)	113, 174, 212, 349, 669
PstI	CTGCAG	1 cut(s)	582
PstNI	CAGNNNCTG	2 cut(s)	122, 215
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	3 cut(s)	54, 256, 500
RsaNI	GTAC	3 cut(s)	53, 255, 499
SaqAI	TTAA	1 cut(s)	725
SatI	GCNGC	6 cut(s)	75, 120, 228, 578, 581, 642
Sau96I	GGNCC	5 cut(s)	113, 174, 212, 349, 669
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	4 cut(s)	274, 286, 386, 741
SetI	ASST	9 cut(s)	61, 112, 121, 225, 229, 318, 357, 442, 692
SfaNI	GCATC	3 cut(s)	295, 438, 577
SfcI	CTRYAG	1 cut(s)	578
SfuI	TTCGAA	1 cut(s)	373
SinI	GGWCC	4 cut(s)	113, 174, 349, 669
SpeI	ACTAGT	1 cut(s)	409
Sse9I	AATT	4 cut(s)	155, 246, 564, 783
SsiI	CCGC	2 cut(s)	74, 259
SspMI	CTAG	4 cut(s)	224, 410, 650, 704
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	468, 681
TaaI	ACNGT	3 cut(s)	523, 673, 697
TaqI	TCGA	1 cut(s)	373
TasI	AATT	4 cut(s)	155, 246, 564, 783
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	725
Tru9I	TTAA	1 cut(s)	725
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	5 cut(s)	119, 227, 577, 580, 641
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	524
VpaK11BI	GGWCC	4 cut(s)	113, 174, 349, 669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	4 cut(s)	224, 410, 650, 704
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.