Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009309

Physical Location & Seq

Genomic Coordinates Reverse (-)

17219757 .. 17222924

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G165900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAAAGGCTTCTGTCCTCTTCATCCCCAACCCCTTTGAAACTTCATCTAAAACCCTCTCCTTTTCTCCATCGACTCGGTCGCATTGACTCGGGAAAACTCAACCTCCCCGCTTCCCAACTGCCCAATCTCAGACGGGTCAGCTTGGTTTCCTGCAAACGTCAAAACCCATCTCCACTGTCTTCTTCTTCTCCTCCTCCATCAGCGCCGTCGAACATTTTGCCGTATCTCTCGTCGAACCGGGCCGAGTCTCCAAATGGGTCGGAGCCAAAATACCAGCTTCTCAATCAGATCGCAACTGGGGCTTCTAAGCAGCGCAAGGCCATCACCACTGGGGCATTTGTTGTGCTTTCTGCTCTTGTTTTGATCTTAATACAACCAGCTTTTGCACCAGCAGCTTTTGCATCCTTTCAAACTGCAACAAAGACAGGTAGCCCGGCTGCTGCTATTGGGAGAAGACTGATCCAGACTGAATTACTTAGTAGTGCATGGACTGGTTTCTTTGCTGGTTGTTTACACACATTATCAGGGCCTGACCACCTAGCTGCTTTGGCTCCACTCTCAATAGGACGCACCCGCATTGAAAGTGCTTTAGTTGGAGCCCTATGGGGATGCGGTCATGACGCTGGCCAGGTTATCTTTGGCTTAATATTTCTACTGCTAAAGGATCGGCTTCACATTGAAATCATCCGAACCTGGGGCACAAGAGTTGTGGGCATTACTCTTCTAGTTATTGGTGCTATGGGCATTAAGGAAGCTTCAGAAGTCCCAAGTCCTTGCGTTGCCTTAGAGAATGGCGAGTGTGATGTTAGTGTATATGAATCTCTAGAAACCCCTACAGTTGGGAAGAAGAAGATTGGCTTTGCTACTTTTGCCACTGGAATTGTCCATGGGCTGCAGCCAGATGCATTGATGATGGTCTTACCCGCGCTTGCCTTGCCATCTCGCATTGCTGGTGCTGCATTTCTGGTTATGTTTTTAGTTGGGACCGTGGTTGCAATGGGAAGCTATACAGTCTTTCTAGGCTCATGTAGTCAGGCACTAAAGGATAGAGTTCCCAGAATAACAGAGAAGCTAACATGGGCATCTTCCCTGGTTGCAATTGCTCTCGGGTTTGCCATAATCATCAGCCAGTTCTTCGGGTATAGCCTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD_2

Protein Analysis

386

Amino Acids

40.77

Weight (kDa)

9.69

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16800
fragaria_vesca	FvH4_5g30360
malus_domestica	MD05G1122200.v1.1 MD10G1124900.v1.1
prunus_persica	Prupe.7G263700_v2.0.a1 Prupe.8G165900_v2.0.a1
pyrus_communis	pycom05g11620 pycom10g10720
rosa_chinensis	RchiOBHm_Chr7g0224771
rosa_laevigata	RLG00000001855 RLG00000034639
rosa_multiflora	Rmu_co8174708.1_g000001 Rmu_sc0000144.1_g000012 Rmu_sc0010368.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234400
rosa_rugosa	Rorug05G0250800 Rorug07G0225600
rosa_samantha	Rh7AG377500 Rh7BG361700 Rh7CG396300 Rh7DG371400
rosa_wichuraiana	Rw7G031350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	929
AciI	CCGC	4 cut(s)	111, 577, 615, 927
AclWI	GGATC	2 cut(s)	457, 675
AcoI	YGGCCR	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	744
AfiI	CCNNNNNNNGG	2 cut(s)	697, 842
AgsI	TTSAA	4 cut(s)	40, 413, 584, 683
AjnI	CCWGG	3 cut(s)	630, 695, 1092
AluBI	AGCT	8 cut(s)	144, 280, 383, 398, 545, 758, 1008, 1075
AluI	AGCT	8 cut(s)	144, 280, 383, 398, 545, 758, 1008, 1075
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	2 cut(s)	457, 675
AlwNI	CAGNNNCTG	1 cut(s)	533
Ama87I	CYCGRG	2 cut(s)	91, 1109
AoxI	GGCC	4 cut(s)	243, 321, 530, 628
ApeKI	GCWGC	8 cut(s)	313, 395, 440, 443, 545, 895, 898, 959
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	3 cut(s)	208, 318, 931
AspS9I	GGNCC	3 cut(s)	243, 530, 987
AsuC2I	CCSGG	2 cut(s)	242, 437
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	2 cut(s)	91, 1109
AvaII	GGWCC	1 cut(s)	987
BaeGI	GKGCMC	1 cut(s)	704
BalI	TGGCCA	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	604
BbsI	GAAGAC	2 cut(s)	174, 463
BbvI	GCAGC	8 cut(s)	325, 407, 427, 430, 532, 882, 910, 946
BccI	CCATC	6 cut(s)	78, 178, 208, 332, 910, 949
BceAI	ACGGC	2 cut(s)	193, 208
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	3 cut(s)	632, 697, 1094
BcnI	CCSGG	2 cut(s)	242, 437
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	4 cut(s)	542, 728, 827, 1022
BfmI	CTRYAG	2 cut(s)	837, 896
BfoI	RGCGCY	1 cut(s)	209
BisI	GCNGC	8 cut(s)	314, 396, 441, 444, 546, 896, 899, 960
BlsI	GCNGC	8 cut(s)	315, 397, 442, 445, 547, 897, 900, 961
Bme1390I	CCNGG	5 cut(s)	242, 437, 632, 697, 1094
Bme18I	GGWCC	1 cut(s)	987
BmeT110I	CYCGRG	2 cut(s)	91, 1109
BmgT120I	GGNCC	3 cut(s)	243, 530, 987
BmiI	GGNNCC	4 cut(s)	267, 555, 601, 988
BmrFI	CCNGG	5 cut(s)	242, 437, 632, 697, 1094
BmrI	ACTGGG	2 cut(s)	309, 342
BmsI	GCATC	4 cut(s)	413, 602, 895, 1094
BmuI	ACTGGG	2 cut(s)	309, 342
BpiI	GAAGAC	2 cut(s)	174, 463
BpuMI	CCSGG	2 cut(s)	242, 437
BsaJI	CCNNGG	4 cut(s)	696, 889, 990, 1092
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	697, 842
Bse1I	ACTGG	5 cut(s)	304, 337, 499, 883, 1132
Bse3DI	GCAATG	2 cut(s)	948, 1005
BseBI	CCWGG	3 cut(s)	632, 697, 1094
BseDI	CCNNGG	4 cut(s)	696, 889, 990, 1092
BseGI	GGATG	4 cut(s)	23, 404, 617, 687
BseLI	CCNNNNNNNGG	2 cut(s)	697, 842
BseMI	GCAATG	2 cut(s)	948, 1005
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	5 cut(s)	304, 337, 499, 883, 1132
BseRI	GAGGAG	2 cut(s)	183, 186
BseSI	GKGCMC	1 cut(s)	704
BseXI	GCAGC	8 cut(s)	325, 407, 427, 430, 532, 882, 910, 946
Bsh1236I	CGCG	1 cut(s)	929
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	4 cut(s)	245, 323, 532, 630
BsiEI	CGRYCG	1 cut(s)	82
BsiHKCI	CYCGRG	2 cut(s)	91, 1109
BsiSI	CCGG	2 cut(s)	241, 437
BslFI	GGGAC	2 cut(s)	752, 1000
BslI	CCNNNNNNNGG	2 cut(s)	697, 842
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	752, 1000
BsnI	GGCC	4 cut(s)	245, 323, 532, 630
BsoBI	CYCGRG	2 cut(s)	91, 1109
Bsp1286I	GDGCHC	2 cut(s)	604, 704
Bsp143I	GATC	4 cut(s)	291, 366, 462, 667
Bsp19I	CCATGG	1 cut(s)	889
BspACI	CCGC	4 cut(s)	111, 577, 615, 927
BspANI	GGCC	4 cut(s)	245, 323, 532, 630
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	929
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	4 cut(s)	267, 555, 601, 988
BspMAI	CTGCAG	1 cut(s)	900
BspPI	GGATC	2 cut(s)	457, 675
BsrDI	GCAATG	2 cut(s)	948, 1005
BsrI	ACTGG	5 cut(s)	304, 337, 499, 883, 1132
BssECI	CCNNGG	4 cut(s)	696, 889, 990, 1092
BssMI	GATC	4 cut(s)	291, 366, 462, 667
BssT1I	CCWWGG	1 cut(s)	889
Bst2UI	CCWGG	3 cut(s)	632, 697, 1094
Bst4CI	ACNGT	4 cut(s)	180, 841, 991, 1015
Bst6I	CTCTTC	2 cut(s)	25, 729
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	628, 933
BstDEI	CTNAG	4 cut(s)	131, 309, 479, 787
BstDSI	CCRYGG	2 cut(s)	889, 990
BstF5I	GGATG	4 cut(s)	23, 404, 617, 687
BstFNI	CGCG	1 cut(s)	929
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	3 cut(s)	208, 318, 931
BstKTI	GATC	4 cut(s)	294, 369, 465, 670
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	4 cut(s)	291, 366, 462, 667
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	7 cut(s)	302, 395, 401, 551, 872, 937, 959
BstNI	CCWGG	3 cut(s)	632, 697, 1094
BstSCI	CCNGG	5 cut(s)	240, 435, 630, 695, 1092
BstSFI	CTRYAG	2 cut(s)	837, 896
BstSLI	GKGCMC	1 cut(s)	704
BstUI	CGCG	1 cut(s)	929
BstV1I	GCAGC	8 cut(s)	325, 407, 427, 430, 532, 882, 910, 946
BstV2I	GAAGAC	2 cut(s)	174, 463
BsuRI	GGCC	4 cut(s)	245, 323, 532, 630
BtgI	CCRYGG	2 cut(s)	889, 990
BtsCI	GGATG	4 cut(s)	23, 404, 617, 687
BtsIMutI	CAGTG	3 cut(s)	176, 330, 876
Cac8I	GCNNGC	2 cut(s)	628, 933
CaiI	CAGNNNCTG	1 cut(s)	533
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	3 cut(s)	208, 318, 931
Cfr13I	GGNCC	3 cut(s)	243, 530, 987
CseI	GACGC	2 cut(s)	579, 632
CspCI	CAANNNNNGTGG	4 cut(s)	693, 728, 865, 900
CviAII	CATG	5 cut(s)	489, 620, 890, 1029, 1080
DdeI	CTNAG	4 cut(s)	131, 309, 479, 787
DpnI	GATC	4 cut(s)	293, 368, 464, 669
DpnII	GATC	4 cut(s)	291, 366, 462, 667
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	25, 729
EarI	CTCTTC	2 cut(s)	25, 729
Eco130I	CCWWGG	1 cut(s)	889
Eco24I	GRGCYC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	987
Eco57I	CTGAAG	1 cut(s)	744
Eco88I	CYCGRG	2 cut(s)	91, 1109
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRII	CCWGG	3 cut(s)	630, 695, 1092
EcoT14I	CCWWGG	1 cut(s)	889
EcoT22I	ATGCAT	1 cut(s)	910
EcoT38I	GRGCYC	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	889
FaeI	CATG	5 cut(s)	492, 623, 893, 1032, 1083
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FaqI	GGGAC	2 cut(s)	752, 1000
FatI	CATG	5 cut(s)	488, 619, 889, 1028, 1079
FauI	CCCGC	3 cut(s)	118, 584, 934
Fnu4HI	GCNGC	8 cut(s)	314, 396, 441, 444, 546, 896, 899, 960
FokI	GGATG	4 cut(s)	10, 391, 624, 674
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	8 cut(s)	314, 396, 441, 444, 546, 896, 899, 960
FspBI	CTAG	4 cut(s)	542, 728, 827, 1022
GlaI	GCGC	3 cut(s)	207, 317, 930
GluI	GCNGC	8 cut(s)	314, 396, 441, 444, 546, 896, 899, 960
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	4 cut(s)	245, 323, 532, 630
HapII	CCGG	2 cut(s)	241, 437
HgaI	GACGC	2 cut(s)	579, 632
HhaI	GCGC	3 cut(s)	208, 318, 931
Hin1II	CATG	5 cut(s)	492, 623, 893, 1032, 1083
Hin6I	GCGC	3 cut(s)	206, 316, 929
HinP1I	GCGC	3 cut(s)	206, 316, 929
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	4 cut(s)	75, 89, 248, 821
HpaII	CCGG	2 cut(s)	241, 437
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	5 cut(s)	134, 265, 291, 692, 763
Hpy188III	TCNNGA	4 cut(s)	93, 466, 620, 827
Hpy8I	GTNNAC	1 cut(s)	515
Hpy99I	CGWCG	2 cut(s)	214, 238
HpyCH4III	ACNGT	4 cut(s)	180, 841, 991, 1015
HpyCH4IV	ACGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	7 cut(s)	302, 395, 401, 551, 872, 937, 959
HpyF3I	CTNAG	4 cut(s)	131, 309, 479, 787
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	5 cut(s)	492, 623, 893, 1032, 1083
HspAI	GCGC	3 cut(s)	206, 316, 929
Kzo9I	GATC	4 cut(s)	291, 366, 462, 667
LmnI	GCTCC	3 cut(s)	265, 559, 599
Lsp1109I	GCAGC	8 cut(s)	325, 407, 427, 430, 532, 882, 910, 946
LweI	GCATC	4 cut(s)	413, 602, 895, 1094
MaeI	CTAG	4 cut(s)	542, 728, 827, 1022
MaeII	ACGT	1 cut(s)	160
MalI	GATC	4 cut(s)	293, 368, 464, 669
MboI	GATC	4 cut(s)	291, 366, 462, 667
MfeI	CAATTG	1 cut(s)	1101
MhlI	GDGCHC	2 cut(s)	604, 704
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	3 cut(s)	473, 882, 1101
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	3 cut(s)	69, 83, 257
MmeI	TCCRAC	2 cut(s)	243, 577
MnlI	CCTC	5 cut(s)	28, 67, 116, 204, 207
Mox20I	TGGCCA	1 cut(s)	630
Mph1103I	ATGCAT	1 cut(s)	910
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	3 cut(s)	371, 647, 750
Msp20I	TGGCCA	1 cut(s)	630
MspI	CCGG	2 cut(s)	241, 437
MspR9I	CCNGG	5 cut(s)	242, 437, 632, 697, 1094
MunI	CAATTG	1 cut(s)	1101
MvaI	CCWGG	3 cut(s)	632, 697, 1094
MvnI	CGCG	1 cut(s)	929
MwoI	GCNNNNNNNGC	7 cut(s)	302, 395, 401, 551, 872, 937, 959
NciI	CCSGG	2 cut(s)	242, 437
NcoI	CCATGG	1 cut(s)	889
NdeII	GATC	4 cut(s)	291, 366, 462, 667
NlaIII	CATG	5 cut(s)	492, 623, 893, 1032, 1083
NlaIV	GGNNCC	4 cut(s)	267, 555, 601, 988
NmeAIII	GCCGAG	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	910
PagI	TCATGA	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	821
PflFI	GACNNNGTC	1 cut(s)	78
PkrI	GCNGC	8 cut(s)	315, 397, 442, 445, 547, 897, 900, 961
PleI	GAGTC	3 cut(s)	69, 83, 256
PpsI	GAGTC	3 cut(s)	69, 83, 256
Psp6I	CCWGG	3 cut(s)	630, 695, 1092
PspGI	CCWGG	3 cut(s)	630, 695, 1092
PspN4I	GGNNCC	4 cut(s)	267, 555, 601, 988
PspPI	GGNCC	3 cut(s)	243, 530, 987
PstI	CTGCAG	1 cut(s)	900
PstNI	CAGNNNCTG	1 cut(s)	533
PsyI	GACNNNGTC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	371, 647, 750
SatI	GCNGC	8 cut(s)	314, 396, 441, 444, 546, 896, 899, 960
Sau3AI	GATC	4 cut(s)	291, 366, 462, 667
Sau96I	GGNCC	3 cut(s)	243, 530, 987
SchI	GAGTC	3 cut(s)	69, 83, 257
ScrFI	CCNGG	5 cut(s)	242, 437, 632, 697, 1094
SduI	GDGCHC	2 cut(s)	604, 704
SfaNI	GCATC	4 cut(s)	413, 602, 895, 1094
SfcI	CTRYAG	2 cut(s)	837, 896
SinI	GGWCC	1 cut(s)	987
Sse9I	AATT	3 cut(s)	473, 882, 1101
SsiI	CCGC	4 cut(s)	111, 577, 615, 927
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	4 cut(s)	542, 728, 827, 1022
StyD4I	CCNGG	5 cut(s)	240, 435, 630, 695, 1092
StyI	CCWWGG	1 cut(s)	889
TaaI	ACNGT	4 cut(s)	180, 841, 991, 1015
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	73, 212, 236
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	3 cut(s)	473, 882, 1101
TfiI	GAWTC	1 cut(s)	821
Tru1I	TTAA	3 cut(s)	371, 647, 750
Tru9I	TTAA	3 cut(s)	371, 647, 750
TscAI	CASTG	3 cut(s)	183, 337, 883
TseI	GCWGC	8 cut(s)	313, 395, 440, 443, 545, 895, 898, 959
TspDTI	ATGAA	3 cut(s)	12, 35, 834
TspRI	CASTG	3 cut(s)	183, 337, 883
Tth111I	GACNNNGTC	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	987
XbaI	TCTAGA	1 cut(s)	826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	4 cut(s)	542, 728, 827, 1022
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.