Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009309

Physical Location & Seq

Genomic Coordinates Forward (+)

21836945 .. 21839578

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G263700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAAAGGCTTCTGTTCTCTTCCTCCCCAACCCCTTTGAAACTCCATGTAAAACCCTCACCTTTTCTCCCTCCACTCGCTCGTATTGCCTCGGCCAAACTCAACTTTCCCGCTTCCCAACTGCCCAATCTCAGACGGGTCAGCTTGGTTTCCTGCAAACATCAAAACCCATCTCCAATTTTTTCTTCTTCTCCTTCTTCATCAGCGCCGTCCAACATTTTACCGGCTCTCTCGCCGAACAGGCCGGAGTTGCCAAATCCGCAGATTATCAAGAAGATTGCAAATGGGGCTTCTACCCAACGCAAGGGCCTGATCACCAGGGCATTTGTTGTGCTTTCTGCCCTTGTTTTGATCTTAATACAACCAGCTTGTGCACCAGCGGCTTATGCATCCTTTCAAACTGCAACAAAGACAGGTAGCCCAGCTGCTGCTATCGGGGGAAGACTGATCCAGACTGAATTACTGAGTAGTGCATGGACTGGGTTCTTAGCCGGTTGCTTACACACATTATCAGGTCCTGACCACTTAGCTGCTTTGGCTCCACTCTCAATTGGGCGCACCCGCATTGAAAGTGCTTTAGTTGGAGCCCTTTGGGGATGTGGCCATGACGCTGGCCAGGTTATCTTTGGCTTAATATTTCTACTACTAAAGGATCGGCTTCACATTGAAATTATCCGAACATGGGGCACAAGAGTTGTGGGCATTACTCTACTAGTTATTGGTGCCATGGGCATTAAGGAAGCTTCAGAAGTCTCAAGTCCTTGTGTTGCCTTAGAGAATGGAGAGTGTGATGCTAGTGTATATGAATCTCTAGAAAACCCTGCCGTTGGGAAGAAGAAGATTGGTTTTGCTACTTTTGCCACTGGAATTGTCCATGGGCTGCAGCCAGATGCATTGATGATGGTCTTGCCCACTCTTGCTTTGCCATCTCGCGTTGCTGGTGCCGCATTTCTGGTTATGTTTTTAGTTGGGACCGTAGTTGCAATGGGAAGCTATACAGTCTTTCTTGGCTCATGTAGTCAGGCACTAAAGGATAGAGTTCCCAGAATAACAGAGAAACTGACATGGGCTTCTTCCCTGGTTGCAATTGCCCTTGGATCTGCCATAATCATCAGCCAGTTATTCGGGTATAGCCTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD_2

Protein Analysis

381

Amino Acids

39.96

Weight (kDa)

9.65

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16800
fragaria_vesca	FvH4_5g30360
malus_domestica	MD05G1122200.v1.1 MD10G1124900.v1.1
prunus_persica	Prupe.7G263700_v2.0.a1 Prupe.8G165900_v2.0.a1
pyrus_communis	pycom05g11620 pycom10g10720
rosa_chinensis	RchiOBHm_Chr7g0224771
rosa_laevigata	RLG00000001855 RLG00000034639
rosa_multiflora	Rmu_co8174708.1_g000001 Rmu_sc0000144.1_g000012 Rmu_sc0010368.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234400
rosa_rugosa	Rorug05G0250800 Rorug07G0225600
rosa_samantha	Rh7AG377500 Rh7BG361700 Rh7CG396300 Rh7DG371400
rosa_wichuraiana	Rw7G031350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	722, 941
AccII	CGCG	1 cut(s)	933
AciI	CCGC	5 cut(s)	111, 260, 380, 562, 945
AclWI	GGATC	3 cut(s)	442, 660, 1105
AcoI	YGGCCR	3 cut(s)	93, 601, 613
AcuI	CTGAAG	1 cut(s)	729
AfiI	CCNNNNNNNGG	3 cut(s)	304, 682, 827
AgsI	TTSAA	4 cut(s)	40, 398, 569, 668
AhlI	ACTAGT	1 cut(s)	712
AjnI	CCWGG	3 cut(s)	317, 615, 1077
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	6 cut(s)	144, 368, 425, 530, 743, 993
AluI	AGCT	6 cut(s)	144, 368, 425, 530, 743, 993
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	757
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	3 cut(s)	442, 660, 1105
AlwNI	CAGNNNCTG	2 cut(s)	428, 518
AoxI	GGCC	5 cut(s)	93, 242, 307, 601, 613
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	5 cut(s)	425, 428, 530, 880, 883
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	208, 558
AspS9I	GGNCC	3 cut(s)	307, 515, 972
AsuHPI	GGTGA	2 cut(s)	51, 307
AvaII	GGWCC	2 cut(s)	515, 972
BaeGI	GKGCMC	2 cut(s)	376, 689
BalI	TGGCCA	2 cut(s)	603, 615
BanI	GGYRCC	2 cut(s)	722, 941
BanII	GRGCYC	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	5 cut(s)	412, 415, 517, 867, 895
BccI	CCATC	3 cut(s)	178, 895, 934
BceAI	ACGGC	2 cut(s)	193, 809
BciT130I	CCWGG	3 cut(s)	319, 617, 1079
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	757
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	3 cut(s)	713, 795, 812
BfmI	CTRYAG	1 cut(s)	881
BfoI	RGCGCY	1 cut(s)	209
BglI	GCCNNNNNGGC	1 cut(s)	241
BisI	GCNGC	7 cut(s)	381, 426, 429, 531, 881, 884, 945
BlsI	GCNGC	7 cut(s)	382, 427, 430, 532, 882, 885, 946
Bme1390I	CCNGG	3 cut(s)	319, 617, 1079
Bme18I	GGWCC	2 cut(s)	515, 972
BmgT120I	GGNCC	3 cut(s)	307, 515, 972
BmiI	GGNNCC	5 cut(s)	540, 586, 724, 943, 973
BmrFI	CCNGG	3 cut(s)	319, 617, 1079
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	3 cut(s)	398, 781, 880
BmuI	ACTGGG	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	739
BsaJI	CCNNGG	6 cut(s)	90, 318, 726, 874, 1077, 1093
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 682, 827
Bse118I	RCCGGY	2 cut(s)	223, 491
Bse1I	ACTGG	3 cut(s)	484, 868, 1117
Bse3DI	GCAATG	1 cut(s)	990
BseBI	CCWGG	3 cut(s)	319, 617, 1079
BseDI	CCNNGG	6 cut(s)	90, 318, 726, 874, 1077, 1093
BseGI	GGATG	2 cut(s)	389, 602
BseLI	CCNNNNNNNGG	3 cut(s)	304, 682, 827
BseMI	GCAATG	1 cut(s)	990
BseMII	CTCAG	2 cut(s)	145, 455
BseNI	ACTGG	3 cut(s)	484, 868, 1117
BseSI	GKGCMC	2 cut(s)	376, 689
BseXI	GCAGC	5 cut(s)	412, 415, 517, 867, 895
BseYI	CCCAGC	1 cut(s)	421
Bsh1236I	CGCG	1 cut(s)	933
BshFI	GGCC	5 cut(s)	95, 244, 309, 603, 615
BshNI	GGYRCC	2 cut(s)	722, 941
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	224, 245, 492
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	3 cut(s)	304, 682, 827
BsmAI	GTCTC	1 cut(s)	757
BsmFI	GGGAC	1 cut(s)	985
BsnI	GGCC	5 cut(s)	95, 244, 309, 603, 615
Bsp1286I	GDGCHC	3 cut(s)	376, 589, 689
Bsp143I	GATC	5 cut(s)	312, 351, 447, 652, 1097
Bsp19I	CCATGG	2 cut(s)	726, 874
BspACI	CCGC	5 cut(s)	111, 260, 380, 562, 945
BspANI	GGCC	5 cut(s)	95, 244, 309, 603, 615
BspCNI	CTCAG	2 cut(s)	144, 456
BspFNI	CGCG	1 cut(s)	933
BspLI	GGNNCC	5 cut(s)	540, 586, 724, 943, 973
BspMAI	CTGCAG	1 cut(s)	885
BspPI	GGATC	3 cut(s)	442, 660, 1105
BspT107I	GGYRCC	2 cut(s)	722, 941
BsrDI	GCAATG	1 cut(s)	990
BsrFI	RCCGGY	2 cut(s)	223, 491
BsrI	ACTGG	3 cut(s)	484, 868, 1117
BssAI	RCCGGY	2 cut(s)	223, 491
BssECI	CCNNGG	6 cut(s)	90, 318, 726, 874, 1077, 1093
BssMI	GATC	5 cut(s)	312, 351, 447, 652, 1097
BssT1I	CCWWGG	3 cut(s)	726, 874, 1093
Bst2UI	CCWGG	3 cut(s)	319, 617, 1079
Bst4CI	ACNGT	2 cut(s)	976, 1000
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	5 cut(s)	131, 464, 487, 526, 772
BstDSI	CCRYGG	2 cut(s)	726, 874
BstF5I	GGATG	2 cut(s)	389, 602
BstFNI	CGCG	1 cut(s)	933
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	208, 558
BstKTI	GATC	5 cut(s)	315, 354, 450, 655, 1100
BstMAI	GTCTC	1 cut(s)	757
BstMBI	GATC	5 cut(s)	312, 351, 447, 652, 1097
BstNI	CCWGG	3 cut(s)	319, 617, 1079
BstSCI	CCNGG	3 cut(s)	317, 615, 1077
BstSFI	CTRYAG	1 cut(s)	881
BstSLI	GKGCMC	2 cut(s)	376, 689
BstUI	CGCG	1 cut(s)	933
BstV1I	GCAGC	5 cut(s)	412, 415, 517, 867, 895
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	1097
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	1097
BsuRI	GGCC	5 cut(s)	95, 244, 309, 603, 615
BtgI	CCRYGG	2 cut(s)	726, 874
BtsCI	GGATG	2 cut(s)	389, 602
BtsIMutI	CAGTG	1 cut(s)	861
Cac8I	GCNNGC	1 cut(s)	613
CaiI	CAGNNNCTG	2 cut(s)	428, 518
CfoI	GCGC	2 cut(s)	208, 558
Cfr10I	RCCGGY	2 cut(s)	223, 491
Cfr13I	GGNCC	3 cut(s)	307, 515, 972
CseI	GACGC	1 cut(s)	617
CspCI	CAANNNNNGTGG	4 cut(s)	678, 713, 850, 885
CviAII	CATG	8 cut(s)	47, 474, 605, 681, 727, 875, 1014, 1065
DdeI	CTNAG	5 cut(s)	131, 464, 487, 526, 772
DpnI	GATC	5 cut(s)	314, 353, 449, 654, 1099
DpnII	GATC	5 cut(s)	312, 351, 447, 652, 1097
EaeI	YGGCCR	3 cut(s)	93, 601, 613
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco130I	CCWWGG	3 cut(s)	726, 874, 1093
Eco24I	GRGCYC	1 cut(s)	589
Eco47I	GGWCC	2 cut(s)	515, 972
Eco57I	CTGAAG	1 cut(s)	729
EcoO109I	RGGNCCY	2 cut(s)	307, 515
EcoRII	CCWGG	3 cut(s)	317, 615, 1077
EcoT14I	CCWWGG	3 cut(s)	726, 874, 1093
EcoT22I	ATGCAT	2 cut(s)	391, 895
EcoT38I	GRGCYC	1 cut(s)	589
ErhI	CCWWGG	3 cut(s)	726, 874, 1093
FaeI	CATG	8 cut(s)	50, 477, 608, 684, 730, 878, 1017, 1068
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	8 cut(s)	46, 473, 604, 680, 726, 874, 1013, 1064
FauI	CCCGC	2 cut(s)	118, 569
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	7 cut(s)	381, 426, 429, 531, 881, 884, 945
FokI	GGATG	2 cut(s)	376, 609
FriOI	GRGCYC	1 cut(s)	589
Fsp4HI	GCNGC	7 cut(s)	381, 426, 429, 531, 881, 884, 945
FspBI	CTAG	3 cut(s)	713, 795, 812
GlaI	GCGC	2 cut(s)	207, 557
GluI	GCNGC	7 cut(s)	381, 426, 429, 531, 881, 884, 945
GsaI	CCCAGC	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	5 cut(s)	95, 244, 309, 603, 615
HapII	CCGG	3 cut(s)	224, 245, 492
HgaI	GACGC	1 cut(s)	617
HhaI	GCGC	2 cut(s)	208, 558
Hin1II	CATG	8 cut(s)	50, 477, 608, 684, 730, 878, 1017, 1068
Hin6I	GCGC	2 cut(s)	206, 556
HinP1I	GCGC	2 cut(s)	206, 556
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	1 cut(s)	806
HpaII	CCGG	3 cut(s)	224, 245, 492
HphI	GGTGA	2 cut(s)	51, 307
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	3 cut(s)	134, 677, 748
Hpy188III	TCNNGA	4 cut(s)	271, 451, 518, 812
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	2 cut(s)	976, 1000
HpyF3I	CTNAG	5 cut(s)	131, 464, 487, 526, 772
Hsp92II	CATG	8 cut(s)	50, 477, 608, 684, 730, 878, 1017, 1068
HspAI	GCGC	2 cut(s)	206, 556
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	5 cut(s)	312, 351, 447, 652, 1097
LmnI	GCTCC	2 cut(s)	544, 584
Lsp1109I	GCAGC	5 cut(s)	412, 415, 517, 867, 895
LweI	GCATC	3 cut(s)	398, 781, 880
MaeI	CTAG	3 cut(s)	713, 795, 812
MalI	GATC	5 cut(s)	314, 353, 449, 654, 1099
MboI	GATC	5 cut(s)	312, 351, 447, 652, 1097
MfeI	CAATTG	2 cut(s)	549, 1086
MflI	RGATCY	1 cut(s)	1097
MhlI	GDGCHC	3 cut(s)	376, 589, 689
MlsI	TGGCCA	2 cut(s)	603, 615
MluCI	AATT	6 cut(s)	177, 458, 549, 669, 867, 1086
MluNI	TGGCCA	2 cut(s)	603, 615
MmeI	TCCRAC	2 cut(s)	237, 562
MnlI	CCTC	4 cut(s)	34, 67, 81, 100
Mox20I	TGGCCA	2 cut(s)	603, 615
Mph1103I	ATGCAT	2 cut(s)	391, 895
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	2 cut(s)	603, 615
MseI	TTAA	3 cut(s)	356, 632, 735
Msp20I	TGGCCA	2 cut(s)	603, 615
MspA1I	CMGCKG	2 cut(s)	380, 425
MspI	CCGG	3 cut(s)	224, 245, 492
MspR9I	CCNGG	3 cut(s)	319, 617, 1079
MunI	CAATTG	2 cut(s)	549, 1086
MvaI	CCWGG	3 cut(s)	319, 617, 1079
MvnI	CGCG	1 cut(s)	933
NcoI	CCATGG	2 cut(s)	726, 874
NdeII	GATC	5 cut(s)	312, 351, 447, 652, 1097
NlaIII	CATG	8 cut(s)	50, 477, 608, 684, 730, 878, 1017, 1068
NlaIV	GGNNCC	5 cut(s)	540, 586, 724, 943, 973
NmeAIII	GCCGAG	1 cut(s)	71
NsiI	ATGCAT	2 cut(s)	391, 895
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	806
PkrI	GCNGC	7 cut(s)	382, 427, 430, 532, 882, 885, 946
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	3 cut(s)	317, 615, 1077
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	3 cut(s)	317, 615, 1077
PspN4I	GGNNCC	5 cut(s)	540, 586, 724, 943, 973
PspPI	GGNCC	3 cut(s)	307, 515, 972
PspPPI	RGGWCCY	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	885
PstNI	CAGNNNCTG	2 cut(s)	428, 518
PsuI	RGATCY	1 cut(s)	1097
PvuII	CAGCTG	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	356, 632, 735
SatI	GCNGC	7 cut(s)	381, 426, 429, 531, 881, 884, 945
Sau3AI	GATC	5 cut(s)	312, 351, 447, 652, 1097
Sau96I	GGNCC	3 cut(s)	307, 515, 972
ScrFI	CCNGG	3 cut(s)	319, 617, 1079
SduI	GDGCHC	3 cut(s)	376, 589, 689
SfaNI	GCATC	3 cut(s)	398, 781, 880
SfcI	CTRYAG	1 cut(s)	881
SinI	GGWCC	2 cut(s)	515, 972
SmlI	CTYRAG	1 cut(s)	754
SmoI	CTYRAG	1 cut(s)	754
SpeI	ACTAGT	1 cut(s)	712
Sse9I	AATT	6 cut(s)	177, 458, 549, 669, 867, 1086
SsiI	CCGC	5 cut(s)	111, 260, 380, 562, 945
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	3 cut(s)	713, 795, 812
StyD4I	CCNGG	3 cut(s)	317, 615, 1077
StyI	CCWWGG	3 cut(s)	726, 874, 1093
TaaI	ACNGT	2 cut(s)	976, 1000
TasI	AATT	6 cut(s)	177, 458, 549, 669, 867, 1086
TauI	GCSGC	2 cut(s)	383, 947
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	3 cut(s)	356, 632, 735
Tru9I	TTAA	3 cut(s)	356, 632, 735
TscAI	CASTG	1 cut(s)	868
TseI	GCWGC	5 cut(s)	425, 428, 530, 880, 883
TspDTI	ATGAA	2 cut(s)	189, 819
TspRI	CASTG	1 cut(s)	868
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	2 cut(s)	515, 972
XbaI	TCTAGA	1 cut(s)	811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	3 cut(s)	713, 795, 812
Zsp2I	ATGCAT	2 cut(s)	391, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.