RchiOBHm_Chr7g0224771

Cytochrome C biogenesis protein transmembrane region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009309
Physical Location & Seq
Forward (+)
47078430 .. 47081549
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20126

Sequence Viewer

Length: 1146 bp
ATGGAAAGGCTTCTGTCCTCTTCTTCATCCCCAACCCCTAAACTCCATCTTAAACAACCCTCTTCCTTTCACCACCCACTCGCTCGTCTCGACTTCCCCAAGCTCAATTTCCCCTCCTCTTCAAAGCTGCCCACTTTGAGACGGGCCGCCGCCGCCGTCTCTGTTTCCTGCAAACATCAAAACCCATCTCCATTTTCTTCGCCGGACGGTTTGCCGTCGAACCGGGTCGGGTCGGGGACAAATGGGTCGGCGCCAAATCCCCTGCTTCTCAATCAGATCGCAGATGGCGCCTCTAAGCAACGCAAGGCCATCACCACTGGGGCATTTGTTGCGCTTTCTGCTCTTATTTTGGTCTTAGTACAACCTGCCTTTGCACCAGCGGCTCTTGCTTCTTTTCAAACTGCAACTAAGACAGGTGGTCCAGCTGCTGTTGCAGTTGGGGGAAGACTCATCCAGACTGAATTACTTAGTAGTGCATGGACCGGTTTCTTTGCTGGTTGCCTGCACACATTATCAGGGCCTGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGGCGTACCCGCATTGAAAGTGCTCTTGTTGGAGCCCTCTGGGGATGTGGCCATGATGCTGGCCAGGTTATCTTTGGATTAGTATTTCTACTACTGAAGGACCAGCTCCATATTGAAGTTATTCGAACTTGGGGCACAAGAGTTGTTGGGCTTACTTTACTAGTTATTGGTGCTATGGGCATTAAGGAAGCTTCAGAAGTCCCAAGTCCTTGTGTTGCCTTGGAGAATGGCGAGTGTGATGTTAGTGTGTACGAAACTCTTGATAACCCAACTGTTGGGAAGAAGAAGATTGGATTTGCTACTTTTGCCACCGGAATTGTACATGGGCTGCAGCCAGATGCATTGATGATGGTGTTGCCTGCACTTGCTTTGCCATCTCGTGTTGCTGGCGCTGCATTTCTAGTTATGTTCTTAGTTGGGACCGTAGTTGCCATGGGAAGCTACACAGTCTTTCTAGGCTCATGTAGTCAGGCATTAAAGGACAGAGTGCCCAGAATAACAGAGAAACTGACATGGGCTTCTTCCCTGATTGCAATTGCTCTTGGATTTGCCATTATTATCAGCCAGTTCTTTGGGTATAGCCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DsbD_2

Protein Analysis

381

Amino Acids

39.83

Weight (kDa)

9.39

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_2 PF13386 209 - 353 7.1e-07 Cytochrome C biogenesis protein transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 373
AccB1I GGYRCC 2 cut(s) 250, 287
AccB7I CCANNNNNTGG 1 cut(s) 830
AciI CCGC 5 cut(s) 147, 150, 153, 380, 565
AcoI YGGCCR 2 cut(s) 604, 616
AcuI CTGAAG 2 cut(s) 671, 732
AcyI GRCGYC 2 cut(s) 251, 288
AfaI GTAC 4 cut(s) 360, 562, 806, 876
AfiI CCNNNNNNNGG 1 cut(s) 830
AgeI ACCGGT 1 cut(s) 482
AgsI TTSAA 4 cut(s) 123, 398, 572, 671
AhdI GACNNNNNGTC 1 cut(s) 417
AhlI ACTAGT 1 cut(s) 715
AjnI CCWGG 1 cut(s) 618
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 7 cut(s) 103, 127, 425, 533, 661, 746, 996
AluI AGCT 7 cut(s) 103, 127, 425, 533, 661, 746, 996
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 3 cut(s) 92, 133, 163
AlwNI CAGNNNCTG 2 cut(s) 428, 521
AoxI GGCC 5 cut(s) 144, 306, 518, 604, 616
ApeKI GCWGC 6 cut(s) 127, 425, 533, 883, 886, 947
AsiGI ACCGGT 1 cut(s) 482
Asp700I GAANNNNTTC 2 cut(s) 9, 675
AspLEI GCGC 4 cut(s) 253, 290, 334, 947
AspS9I GGNCC 6 cut(s) 144, 419, 480, 518, 655, 975
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 62, 304
AsuII TTCGAA 1 cut(s) 679
AvaII GGWCC 4 cut(s) 419, 480, 655, 975
BaeGI GKGCMC 2 cut(s) 692, 1047
BalI TGGCCA 2 cut(s) 606, 618
BanI GGYRCC 2 cut(s) 250, 287
BanII GRGCYC 1 cut(s) 592
BauI CACGAG 1 cut(s) 933
BbsI GAAGAC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 6 cut(s) 114, 412, 520, 870, 898, 934
BccI CCATC 6 cut(s) 54, 193, 278, 317, 898, 937
BceAI ACGGC 2 cut(s) 140, 199
BciT130I CCWGG 1 cut(s) 620
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 3 cut(s) 92, 133, 163
BcuI ACTAGT 1 cut(s) 715
BfaI CTAG 4 cut(s) 530, 716, 956, 1010
BfmI CTRYAG 1 cut(s) 884
BfoI RGCGCY 3 cut(s) 254, 291, 948
BfuAI ACCTGC 1 cut(s) 373
Bme1390I CCNGG 2 cut(s) 224, 620
Bme18I GGWCC 4 cut(s) 419, 480, 655, 975
BmeRI GACNNNNNGTC 1 cut(s) 417
BmgT120I GGNCC 6 cut(s) 144, 419, 480, 518, 655, 975
BmiI GGNNCC 5 cut(s) 252, 289, 543, 589, 976
BmrFI CCNGG 2 cut(s) 224, 620
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 601, 883
BmuI ACTGGG 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 451
Bpu14I TTCGAA 1 cut(s) 679
BpuMI CCSGG 1 cut(s) 224
BsaHI GRCGYC 2 cut(s) 251, 288
BsaJI CCNNGG 2 cut(s) 774, 987
BsaWI WCCGGW 2 cut(s) 482, 866
Bsc4I CCNNNNNNNGG 1 cut(s) 830
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 322, 1120
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 2 cut(s) 774, 987
BseGI GGATG 3 cut(s) 26, 450, 605
BseLI CCNNNNNNNGG 1 cut(s) 830
BseNI ACTGG 2 cut(s) 322, 1120
BseRI GAGGAG 1 cut(s) 106
BseSI GKGCMC 2 cut(s) 692, 1047
BseXI GCAGC 6 cut(s) 114, 412, 520, 870, 898, 934
BsgI GTGCAG 2 cut(s) 488, 900
BshFI GGCC 5 cut(s) 146, 308, 520, 606, 618
BshNI GGYRCC 2 cut(s) 250, 287
BshTI ACCGGT 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 4 cut(s) 203, 223, 483, 867
BslFI GGGAC 3 cut(s) 250, 740, 988
BslI CCNNNNNNNGG 1 cut(s) 830
BsmAI GTCTC 3 cut(s) 92, 133, 163
BsmBI CGTCTC 3 cut(s) 92, 133, 163
BsmFI GGGAC 3 cut(s) 250, 740, 988
BsnI GGCC 5 cut(s) 146, 308, 520, 606, 618
Bsp119I TTCGAA 1 cut(s) 679
Bsp1286I GDGCHC 4 cut(s) 580, 592, 692, 1047
Bsp1407I TGTACA 1 cut(s) 874
Bsp143I GATC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 987
BspACI CCGC 5 cut(s) 147, 150, 153, 380, 565
BspANI GGCC 5 cut(s) 146, 308, 520, 606, 618
BspLI GGNNCC 5 cut(s) 252, 289, 543, 589, 976
BspMAI CTGCAG 1 cut(s) 888
BspMI ACCTGC 1 cut(s) 373
BspT104I TTCGAA 1 cut(s) 679
BspT107I GGYRCC 2 cut(s) 250, 287
BsrFI RCCGGY 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 874
BsrI ACTGG 2 cut(s) 322, 1120
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 774, 987
BssMI GATC 1 cut(s) 276
BssNI GRCGYC 2 cut(s) 251, 288
BssSI CACGAG 1 cut(s) 933
BssT1I CCWWGG 2 cut(s) 774, 987
Bst2BI CACGAG 1 cut(s) 933
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 4 cut(s) 209, 829, 979, 1003
Bst6I CTCTTC 3 cut(s) 25, 67, 124
BstACI GRCGYC 2 cut(s) 251, 288
BstAPI GCANNNNNTGC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 874
BstBI TTCGAA 1 cut(s) 679
BstC8I GCNNGC 4 cut(s) 503, 616, 915, 943
BstDEI CTNAG 5 cut(s) 294, 355, 408, 467, 967
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 3 cut(s) 26, 450, 605
BstH2I RGCGCY 3 cut(s) 254, 291, 948
BstHHI GCGC 4 cut(s) 253, 290, 334, 947
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 3 cut(s) 92, 133, 163
BstMBI GATC 1 cut(s) 276
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 222, 618
BstSFI CTRYAG 1 cut(s) 884
BstSLI GKGCMC 2 cut(s) 692, 1047
BstV1I GCAGC 6 cut(s) 114, 412, 520, 870, 898, 934
BstV2I GAAGAC 1 cut(s) 451
BstXI CCANNNNNNTGG 2 cut(s) 614, 1127
BsuRI GGCC 5 cut(s) 146, 308, 520, 606, 618
BtgI CCRYGG 1 cut(s) 987
BtsCI GGATG 3 cut(s) 26, 450, 605
BtsIMutI CAGTG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 4 cut(s) 503, 616, 915, 943
CaiI CAGNNNCTG 2 cut(s) 428, 521
CfoI GCGC 4 cut(s) 253, 290, 334, 947
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 6 cut(s) 144, 419, 480, 518, 655, 975
Csp6I GTAC 4 cut(s) 359, 561, 805, 875
CspAI ACCGGT 1 cut(s) 482
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 6 cut(s) 477, 608, 878, 988, 1017, 1068
CviQI GTAC 4 cut(s) 359, 561, 805, 875
DdeI CTNAG 5 cut(s) 294, 355, 408, 467, 967
DinI GGCGCC 2 cut(s) 252, 289
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
DrdI GACNNNNNNGTC 1 cut(s) 244
DriI GACNNNNNGTC 1 cut(s) 417
DseDI GACNNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 2 cut(s) 604, 616
Eam1104I CTCTTC 3 cut(s) 25, 67, 124
Eam1105I GACNNNNNGTC 1 cut(s) 417
EarI CTCTTC 3 cut(s) 25, 67, 124
Eco130I CCWWGG 2 cut(s) 774, 987
Eco24I GRGCYC 1 cut(s) 592
Eco47I GGWCC 4 cut(s) 419, 480, 655, 975
Eco57I CTGAAG 2 cut(s) 671, 732
EcoO109I RGGNCCY 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 2 cut(s) 774, 987
EcoT22I ATGCAT 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 592
EgeI GGCGCC 2 cut(s) 252, 289
EheI GGCGCC 2 cut(s) 252, 289
ErhI CCWWGG 2 cut(s) 774, 987
Esp3I CGTCTC 3 cut(s) 92, 133, 163
FaeI CATG 6 cut(s) 480, 611, 881, 991, 1020, 1071
FaqI GGGAC 3 cut(s) 250, 740, 988
FatI CATG 6 cut(s) 476, 607, 877, 987, 1016, 1067
FauI CCCGC 1 cut(s) 572
FokI GGATG 3 cut(s) 13, 437, 612
FriOI GRGCYC 1 cut(s) 592
FspBI CTAG 4 cut(s) 530, 716, 956, 1010
GlaI GCGC 4 cut(s) 252, 289, 333, 946
HaeII RGCGCY 3 cut(s) 254, 291, 948
HaeIII GGCC 5 cut(s) 146, 308, 520, 606, 618
HapII CCGG 4 cut(s) 203, 223, 483, 867
HhaI GCGC 4 cut(s) 253, 290, 334, 947
Hin1I GRCGYC 2 cut(s) 251, 288
Hin1II CATG 6 cut(s) 480, 611, 881, 991, 1020, 1071
Hin6I GCGC 4 cut(s) 251, 288, 332, 945
HinP1I GCGC 4 cut(s) 251, 288, 332, 945
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 1 cut(s) 447
HpaII CCGG 4 cut(s) 203, 223, 483, 867
HphI GGTGA 2 cut(s) 62, 304
Hpy166II GTNNAC 1 cut(s) 805
Hpy188I TCNGA 2 cut(s) 276, 751
Hpy188III TCNNGA 3 cut(s) 89, 454, 815
Hpy8I GTNNAC 1 cut(s) 805
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 646
HpyCH4III ACNGT 4 cut(s) 209, 829, 979, 1003
HpyF3I CTNAG 5 cut(s) 294, 355, 408, 467, 967
Hsp92I GRCGYC 2 cut(s) 251, 288
Hsp92II CATG 6 cut(s) 480, 611, 881, 991, 1020, 1071
HspAI GCGC 4 cut(s) 251, 288, 332, 945
KasI GGCGCC 2 cut(s) 250, 287
Kzo9I GATC 1 cut(s) 276
LmnI GCTCC 3 cut(s) 547, 587, 666
Lsp1109I GCAGC 6 cut(s) 114, 412, 520, 870, 898, 934
LweI GCATC 2 cut(s) 601, 883
MaeI CTAG 4 cut(s) 530, 716, 956, 1010
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MfeI CAATTG 2 cut(s) 552, 1089
MhlI GDGCHC 4 cut(s) 580, 592, 692, 1047
MlsI TGGCCA 2 cut(s) 606, 618
MluCI AATT 5 cut(s) 106, 461, 552, 870, 1089
MluNI TGGCCA 2 cut(s) 606, 618
Mly113I GGCGCC 2 cut(s) 251, 288
MlyI GAGTC 1 cut(s) 441
MmeI TCCRAC 1 cut(s) 565
MnlI CCTC 6 cut(s) 28, 70, 124, 127, 301, 602
Mox20I TGGCCA 2 cut(s) 606, 618
Mph1103I ATGCAT 1 cut(s) 898
MroXI GAANNNNTTC 2 cut(s) 9, 675
MscI TGGCCA 2 cut(s) 606, 618
MseI TTAA 3 cut(s) 51, 738, 1031
Msp20I TGGCCA 2 cut(s) 606, 618
MspA1I CMGCKG 2 cut(s) 380, 425
MspI CCGG 4 cut(s) 203, 223, 483, 867
MspR9I CCNGG 2 cut(s) 224, 620
MunI CAATTG 2 cut(s) 552, 1089
MvaI CCWGG 1 cut(s) 620
NarI GGCGCC 2 cut(s) 251, 288
NciI CCSGG 1 cut(s) 224
NcoI CCATGG 1 cut(s) 987
NdeII GATC 1 cut(s) 276
NlaIII CATG 6 cut(s) 480, 611, 881, 991, 1020, 1071
NlaIV GGNNCC 5 cut(s) 252, 289, 543, 589, 976
NsiI ATGCAT 1 cut(s) 898
NspV TTCGAA 1 cut(s) 679
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 2 cut(s) 9, 675
PflMI CCANNNNNTGG 1 cut(s) 830
PinAI ACCGGT 1 cut(s) 482
PleI GAGTC 1 cut(s) 441
PluTI GGCGCC 2 cut(s) 254, 291
PpsI GAGTC 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 5 cut(s) 252, 289, 543, 589, 976
PspPI GGNCC 6 cut(s) 144, 419, 480, 518, 655, 975
PstI CTGCAG 1 cut(s) 888
PstNI CAGNNNCTG 2 cut(s) 428, 521
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 4 cut(s) 360, 562, 806, 876
RsaNI GTAC 4 cut(s) 359, 561, 805, 875
SaqAI TTAA 3 cut(s) 51, 738, 1031
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 6 cut(s) 144, 419, 480, 518, 655, 975
SchI GAGTC 1 cut(s) 441
ScrFI CCNGG 2 cut(s) 224, 620
SduI GDGCHC 4 cut(s) 580, 592, 692, 1047
SfaNI GCATC 2 cut(s) 601, 883
SfcI CTRYAG 1 cut(s) 884
SfoI GGCGCC 2 cut(s) 252, 289
SfuI TTCGAA 1 cut(s) 679
SinI GGWCC 4 cut(s) 419, 480, 655, 975
SpeI ACTAGT 1 cut(s) 715
Sse9I AATT 5 cut(s) 106, 461, 552, 870, 1089
SsiI CCGC 5 cut(s) 147, 150, 153, 380, 565
SspDI GGCGCC 2 cut(s) 250, 287
SspMI CTAG 4 cut(s) 530, 716, 956, 1010
StyD4I CCNGG 2 cut(s) 222, 618
StyI CCWWGG 2 cut(s) 774, 987
TaaI ACNGT 4 cut(s) 209, 829, 979, 1003
TaqI TCGA 3 cut(s) 90, 218, 679
TasI AATT 5 cut(s) 106, 461, 552, 870, 1089
TatI WGTACW 2 cut(s) 358, 874
TauI GCSGC 4 cut(s) 149, 152, 155, 383
Tru1I TTAA 3 cut(s) 51, 738, 1031
Tru9I TTAA 3 cut(s) 51, 738, 1031
TscAI CASTG 1 cut(s) 322
TseI GCWGC 6 cut(s) 127, 425, 533, 883, 886, 947
TspDTI ATGAA 1 cut(s) 15
TspRI CASTG 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 830
VpaK11BI GGWCC 4 cut(s) 419, 480, 655, 975
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmnI GAANNNNTTC 2 cut(s) 9, 675
XspI CTAG 4 cut(s) 530, 716, 956, 1010
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.