Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009309

Physical Location & Seq

Genomic Coordinates Reverse (-)

46928579 .. 46930908

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034639

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAATTTGTGAGAAATGAAGATAAGTTTTGGAGACTCTACGATGGAATCGCTCATCTCGACTTCCCCAAGCTCAATTTCCCCTCCTCTTCAAAGCTGCCCAGTTTGAGACAGACCGCTGTCTCTGTTTCCTGCAAACATCAAAACCCATCTCCATTTTCTTTTGCCGTCGAACCGGGTTGGGTCAAGGACAAATGGGCCATCAACACTGGGGCATTTGTTGTGCTTTCTGCTCTTATTTTGGTCTTACTACAACCTGCCTTTGCACCAGCGGCTCTTGCTTCTTTTCAAACTGCAACTAAGACAGGTGGTCCAGCTATTGTTGCAGTTGGGGGAAGACTCATCCAGACTGAATTACTTAGTAGTGCATGGACCGGTTTCTTTGCTGGTTGCTTGCACACATTATCAGGGCCTGACCACCTAGCTGCTTTGGCTCCACTCTCAATTGGGCGTACCCGCATTGAAAGTGCTCTTGTTGGAGCCCTCTGGGGATGCGGCCACGATGCTGGCCAGGTTATCTTTGGATTAATATTTCCACTACTGAAGGACCGACTCCATATTGAAGTTATTCGAACTTGGGGCACAAGAGTTGTTGGGCTTACTTTACTAGTTATTGGTGCTATGGGCATTAAGGAAGCTTCAGAAGTCCCGAGTCCTTGTGTTGCCTTGGAGAATGGCGAGTGTGATGTTAGTGTGTACGAAACTCTTGATAACCCAACTGTTGGGAAGAAGAAGATTGGTTTTGCTACTTTTGCCACCGGAATTATACATGGGCTGCAACCAGATGCATTGATGATGGTGTTGCCTGCACTTGCTTTGCCATCTCTTGTTGCTAGCGCTGCATTTCTAGTTATGTTCTTAGTTGGGACCGTAGTTGCCATGGGAGCTACACAGTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD_2

Protein Analysis

301

Amino Acids

31.81

Weight (kDa)

8.28

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16800
fragaria_vesca	FvH4_5g30360
malus_domestica	MD05G1122200.v1.1 MD10G1124900.v1.1
prunus_persica	Prupe.7G263700_v2.0.a1 Prupe.8G165900_v2.0.a1
pyrus_communis	pycom05g11620 pycom10g10720
rosa_chinensis	RchiOBHm_Chr7g0224771
rosa_laevigata	RLG00000001855 RLG00000034639
rosa_multiflora	Rmu_co8174708.1_g000001 Rmu_sc0000144.1_g000012 Rmu_sc0010368.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234400
rosa_rugosa	Rorug05G0250800 Rorug07G0225600
rosa_samantha	Rh7AG377500 Rh7BG361700 Rh7CG396300 Rh7DG371400
rosa_wichuraiana	Rw7G031350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	722
AciI	CCGC	4 cut(s)	117, 272, 457, 495
AcoI	YGGCCR	2 cut(s)	496, 508
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	563, 624
AfaI	GTAC	2 cut(s)	454, 698
AfeI	AGCGCT	1 cut(s)	838
AfiI	CCNNNNNNNGG	1 cut(s)	722
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	93, 290, 464, 563
AhdI	GACNNNNNGTC	1 cut(s)	309
AhlI	ACTAGT	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	6 cut(s)	73, 97, 317, 425, 638, 887
AluI	AGCT	6 cut(s)	73, 97, 317, 425, 638, 887
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	3 cut(s)	28, 103, 127
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	649
Aor51HI	AGCGCT	1 cut(s)	838
AoxI	GGCC	4 cut(s)	198, 410, 496, 508
ApeKI	GCWGC	4 cut(s)	97, 425, 775, 839
ApoI	RAATTY	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	527
AsiGI	ACCGGT	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	839
AspS9I	GGNCC	6 cut(s)	198, 311, 372, 410, 547, 867
AsuC2I	CCSGG	1 cut(s)	177
AsuII	TTCGAA	1 cut(s)	571
AsuNHI	GCTAGC	1 cut(s)	833
AvaI	CYCGRG	1 cut(s)	649
AvaII	GGWCC	4 cut(s)	311, 372, 547, 867
BaeGI	GKGCMC	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	4 cut(s)	84, 412, 762, 826
BccI	CCATC	5 cut(s)	38, 157, 209, 790, 829
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	512
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	3 cut(s)	28, 103, 127
BcuI	ACTAGT	1 cut(s)	607
BfaI	CTAG	5 cut(s)	422, 608, 834, 848, 901
BfoI	RGCGCY	1 cut(s)	840
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	6 cut(s)	98, 273, 426, 496, 776, 840
BlsI	GCNGC	6 cut(s)	99, 274, 427, 497, 777, 841
Bme1390I	CCNGG	2 cut(s)	177, 512
Bme18I	GGWCC	4 cut(s)	311, 372, 547, 867
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	649
BmgT120I	GGNCC	6 cut(s)	198, 311, 372, 410, 547, 867
BmiI	GGNNCC	3 cut(s)	435, 481, 868
BmrFI	CCNGG	2 cut(s)	177, 512
BmrI	ACTGGG	2 cut(s)	96, 219
BmsI	GCATC	3 cut(s)	482, 493, 775
BmtI	GCTAGC	1 cut(s)	837
BmuI	ACTGGG	2 cut(s)	96, 219
BoxI	GACNNNNGTC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	343
Bpu14I	TTCGAA	1 cut(s)	571
BpuMI	CCSGG	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	666, 879
BsaWI	WCCGGW	2 cut(s)	374, 758
Bsc4I	CCNNNNNNNGG	1 cut(s)	722
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	102, 214
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	666, 879
BseGI	GGATG	2 cut(s)	342, 497
BseLI	CCNNNNNNNGG	1 cut(s)	722
BseNI	ACTGG	2 cut(s)	102, 214
BseRI	GAGGAG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	4 cut(s)	84, 412, 762, 826
BsgI	GTGCAG	1 cut(s)	792
BshFI	GGCC	4 cut(s)	200, 412, 498, 510
BshTI	ACCGGT	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	649
BsiSI	CCGG	3 cut(s)	176, 375, 759
BslFI	GGGAC	2 cut(s)	632, 880
BslI	CCNNNNNNNGG	1 cut(s)	722
BsmAI	GTCTC	3 cut(s)	28, 103, 127
BsmFI	GGGAC	2 cut(s)	632, 880
BsnI	GGCC	4 cut(s)	200, 412, 498, 510
BsoBI	CYCGRG	1 cut(s)	649
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	3 cut(s)	472, 484, 584
Bsp19I	CCATGG	1 cut(s)	879
BspACI	CCGC	4 cut(s)	117, 272, 457, 495
BspANI	GGCC	4 cut(s)	200, 412, 498, 510
BspLI	GGNNCC	3 cut(s)	435, 481, 868
BspMI	ACCTGC	1 cut(s)	265
BspOI	GCTAGC	1 cut(s)	837
BspT104I	TTCGAA	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	102, 214
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	666, 879
BssT1I	CCWWGG	2 cut(s)	666, 879
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	721, 871, 894
Bst6I	CTCTTC	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	4 cut(s)	395, 508, 807, 835
BstDEI	CTNAG	3 cut(s)	300, 359, 859
BstDSI	CCRYGG	1 cut(s)	879
BstF5I	GGATG	2 cut(s)	342, 497
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	1 cut(s)	839
BstMAI	GTCTC	3 cut(s)	28, 103, 127
BstMWI	GCNNNNNNNGC	7 cut(s)	272, 278, 323, 431, 752, 839, 884
BstNI	CCWGG	1 cut(s)	512
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	175, 510
BstSLI	GKGCMC	1 cut(s)	584
BstV1I	GCAGC	4 cut(s)	84, 412, 762, 826
BstV2I	GAAGAC	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	506
BsuRI	GGCC	4 cut(s)	200, 412, 498, 510
BtgI	CCRYGG	1 cut(s)	879
BtsCI	GGATG	2 cut(s)	342, 497
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	4 cut(s)	395, 508, 807, 835
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	1 cut(s)	839
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	6 cut(s)	198, 311, 372, 410, 547, 867
Csp6I	GTAC	2 cut(s)	453, 697
CspAI	ACCGGT	1 cut(s)	374
CviAII	CATG	3 cut(s)	369, 770, 880
CviQI	GTAC	2 cut(s)	453, 697
DdeI	CTNAG	3 cut(s)	300, 359, 859
DriI	GACNNNNNGTC	1 cut(s)	309
EaeI	YGGCCR	2 cut(s)	496, 508
Eam1104I	CTCTTC	1 cut(s)	94
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	666, 879
Eco24I	GRGCYC	1 cut(s)	484
Eco47I	GGWCC	4 cut(s)	311, 372, 547, 867
Eco47III	AGCGCT	1 cut(s)	838
Eco57I	CTGAAG	2 cut(s)	563, 624
Eco88I	CYCGRG	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	2 cut(s)	666, 879
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	1 cut(s)	484
ErhI	CCWWGG	2 cut(s)	666, 879
FaeI	CATG	3 cut(s)	372, 773, 883
FaiI	YATR	7 cut(s)	370, 558, 623, 767, 771, 854, 881
FaqI	GGGAC	2 cut(s)	632, 880
FatI	CATG	3 cut(s)	368, 769, 879
FauI	CCCGC	1 cut(s)	464
Fnu4HI	GCNGC	6 cut(s)	98, 273, 426, 496, 776, 840
FokI	GGATG	2 cut(s)	329, 504
FriOI	GRGCYC	1 cut(s)	484
Fsp4HI	GCNGC	6 cut(s)	98, 273, 426, 496, 776, 840
FspBI	CTAG	5 cut(s)	422, 608, 834, 848, 901
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	6 cut(s)	98, 273, 426, 496, 776, 840
HaeII	RGCGCY	1 cut(s)	840
HaeIII	GGCC	4 cut(s)	200, 412, 498, 510
HapII	CCGG	3 cut(s)	176, 375, 759
HhaI	GCGC	1 cut(s)	839
Hin1II	CATG	3 cut(s)	372, 773, 883
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	5 cut(s)	36, 48, 339, 552, 652
HpaII	CCGG	3 cut(s)	176, 375, 759
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	1 cut(s)	643
Hpy188III	TCNNGA	4 cut(s)	59, 346, 649, 707
Hpy8I	GTNNAC	1 cut(s)	697
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	3 cut(s)	721, 871, 894
HpyF10VI	GCNNNNNNNGC	7 cut(s)	272, 278, 323, 431, 752, 839, 884
HpyF3I	CTNAG	3 cut(s)	300, 359, 859
Hsp92II	CATG	3 cut(s)	372, 773, 883
HspAI	GCGC	1 cut(s)	837
LmnI	GCTCC	3 cut(s)	439, 479, 884
Lsp1109I	GCAGC	4 cut(s)	84, 412, 762, 826
LweI	GCATC	3 cut(s)	482, 493, 775
MaeI	CTAG	5 cut(s)	422, 608, 834, 848, 901
MboII	GAAGA	6 cut(s)	32, 81, 348, 739, 742, 745
MfeI	CAATTG	1 cut(s)	444
MhlI	GDGCHC	3 cut(s)	472, 484, 584
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	5 cut(s)	5, 76, 353, 444, 762
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	4 cut(s)	30, 333, 546, 661
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	3 cut(s)	94, 97, 494
Mox20I	TGGCCA	1 cut(s)	510
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	2 cut(s)	527, 630
Msp20I	TGGCCA	1 cut(s)	510
MspA1I	CMGCKG	2 cut(s)	119, 272
MspI	CCGG	3 cut(s)	176, 375, 759
MspR9I	CCNGG	2 cut(s)	177, 512
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	7 cut(s)	272, 278, 323, 431, 752, 839, 884
NciI	CCSGG	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	879
NheI	GCTAGC	1 cut(s)	833
NlaIII	CATG	3 cut(s)	372, 773, 883
NlaIV	GGNNCC	3 cut(s)	435, 481, 868
NsiI	ATGCAT	1 cut(s)	790
NspV	TTCGAA	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	722
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	6 cut(s)	99, 274, 427, 497, 777, 841
PleI	GAGTC	4 cut(s)	30, 333, 546, 660
PpsI	GAGTC	4 cut(s)	30, 333, 546, 660
PshAI	GACNNNNGTC	1 cut(s)	119
PshBI	ATTAAT	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	3 cut(s)	435, 481, 868
PspPI	GGNCC	6 cut(s)	198, 311, 372, 410, 547, 867
PstNI	CAGNNNCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	454, 698
RsaNI	GTAC	2 cut(s)	453, 697
SaqAI	TTAA	2 cut(s)	527, 630
SatI	GCNGC	6 cut(s)	98, 273, 426, 496, 776, 840
Sau96I	GGNCC	6 cut(s)	198, 311, 372, 410, 547, 867
SchI	GAGTC	4 cut(s)	30, 333, 546, 661
ScrFI	CCNGG	2 cut(s)	177, 512
SduI	GDGCHC	3 cut(s)	472, 484, 584
SfaNI	GCATC	3 cut(s)	482, 493, 775
SfuI	TTCGAA	1 cut(s)	571
SinI	GGWCC	4 cut(s)	311, 372, 547, 867
SpeI	ACTAGT	1 cut(s)	607
Sse9I	AATT	5 cut(s)	5, 76, 353, 444, 762
SsiI	CCGC	4 cut(s)	117, 272, 457, 495
SspI	AATATT	1 cut(s)	531
SspMI	CTAG	5 cut(s)	422, 608, 834, 848, 901
StyD4I	CCNGG	2 cut(s)	175, 510
StyI	CCWWGG	2 cut(s)	666, 879
TaaI	ACNGT	3 cut(s)	721, 871, 894
TaqI	TCGA	3 cut(s)	60, 171, 571
TaqII	GACCGA	1 cut(s)	564
TasI	AATT	5 cut(s)	5, 76, 353, 444, 762
TauI	GCSGC	2 cut(s)	275, 498
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	527, 630
Tru9I	TTAA	2 cut(s)	527, 630
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	4 cut(s)	97, 425, 775, 839
TspDTI	ATGAA	2 cut(s)	17, 33
TspRI	CASTG	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	722
VpaK11BI	GGWCC	4 cut(s)	311, 372, 547, 867
VspI	ATTAAT	1 cut(s)	527
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	5 cut(s)	422, 608, 834, 848, 901
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.