Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000144.1

Orthogroup ID

OG0009309

Physical Location & Seq

Genomic Coordinates Reverse (-)

41960 .. 44401

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000144.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atggaaaggcttctgtcctcttcttcatccccaacccctaaactccatcttaaacaaccctcttcctttcgccacccactcgctcgtctcgacttccccaagctcaatttcccctcctcttcaaagctgcccagtttgagacgggccgccgtctctgtttcctgcaaacatcaaaacccatctccattttcttcgccggacggtttgccgtcgaaccgggtcgggtcggggacaaatgggtcggcgccgaatcccctgcttctcaatcggatcgcagatggcgcctctaagcaacgcaaggccatcaccactggggcatttgttgcgctttctgctcttattttggtcttagtacaacctgcctttgcaccagcggctcttgcttcttttcaaactgcaactaagacaggtggtccagctgctgttgcagttgggggaagactcatccagactgaattacttagtagtgcatggaccggtttctttgctggttgcctgcacacattatcagggcctgaccacctagctgctttggctccactctcaattgggcgtacccgcattgaaagtgctcttgttggagccctctggggatgtggccatgatgctggccaggttatctttggattagtatttctactactgaaggaccagctccatattgaagttattcgaacttggggcacaagagttgttgggcttactttactagttattggtgctatgggcatcaaggaagcttcagaagtcccaagtccttgtgttgccttggagaatggcgagtgtgatgttagtgtgtacgaaactcttgataacccaactgttgggaagaagaagattggatttgctacttttgccaccggaattgtgcatgggctgcagccagatgcattgatgatggtgttgcctgcacttgctttgccatctcgtgttgctggcgctgcatttctagttatgttcttagttgggaccgtagttgccatgggaagctacacagtctttctaggctcatgtagtcaggcattaaaggacagagtgcccagaataacagagaaactgacatgggcttcttccctgattgcaattgctcttggatttgccattattatcagccagttctttgggtatagcctgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD_2

Protein Analysis

379

Amino Acids

39.72

Weight (kDa)

9.58

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16800
fragaria_vesca	FvH4_5g30360
malus_domestica	MD05G1122200.v1.1 MD10G1124900.v1.1
prunus_persica	Prupe.7G263700_v2.0.a1 Prupe.8G165900_v2.0.a1
pyrus_communis	pycom05g11620 pycom10g10720
rosa_chinensis	RchiOBHm_Chr7g0224771
rosa_laevigata	RLG00000001855 RLG00000034639
rosa_multiflora	Rmu_co8174708.1_g000001 Rmu_sc0000144.1_g000012 Rmu_sc0010368.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234400
rosa_rugosa	Rorug05G0250800 Rorug07G0225600
rosa_samantha	Rh7AG377500 Rh7BG361700 Rh7CG396300 Rh7DG371400
rosa_wichuraiana	Rw7G031350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	2 cut(s)	244, 281
AccB7I	CCANNNNNTGG	1 cut(s)	824
AciI	CCGC	3 cut(s)	147, 374, 559
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	2 cut(s)	598, 610
AcuI	CTGAAG	2 cut(s)	665, 726
AcyI	GRCGYC	2 cut(s)	245, 282
AfaI	GTAC	3 cut(s)	354, 556, 800
AfiI	CCNNNNNNNGG	1 cut(s)	824
AgeI	ACCGGT	1 cut(s)	476
AgsI	TTSAA	4 cut(s)	123, 392, 566, 665
AhdI	GACNNNNNGTC	1 cut(s)	411
AhlI	ACTAGT	1 cut(s)	709
AjnI	CCWGG	1 cut(s)	612
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	7 cut(s)	103, 127, 419, 527, 655, 740, 990
AluI	AGCT	7 cut(s)	103, 127, 419, 527, 655, 740, 990
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	3 cut(s)	92, 133, 157
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	2 cut(s)	422, 515
AoxI	GGCC	5 cut(s)	144, 300, 512, 598, 610
ApeKI	GCWGC	6 cut(s)	127, 419, 527, 877, 880, 941
AsiGI	ACCGGT	1 cut(s)	476
Asp700I	GAANNNNTTC	2 cut(s)	9, 669
AspLEI	GCGC	4 cut(s)	247, 284, 328, 941
AspS9I	GGNCC	6 cut(s)	144, 413, 474, 512, 649, 969
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	673
AvaII	GGWCC	4 cut(s)	413, 474, 649, 969
BaeGI	GKGCMC	2 cut(s)	686, 1041
BalI	TGGCCA	2 cut(s)	600, 612
BanI	GGYRCC	2 cut(s)	244, 281
BanII	GRGCYC	1 cut(s)	586
BauI	CACGAG	1 cut(s)	927
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	6 cut(s)	114, 406, 514, 864, 892, 928
BccI	CCATC	6 cut(s)	54, 187, 272, 311, 892, 931
BceAI	ACGGC	2 cut(s)	134, 193
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	614
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	3 cut(s)	92, 133, 157
BcuI	ACTAGT	1 cut(s)	709
BfaI	CTAG	4 cut(s)	524, 710, 950, 1004
BfmI	CTRYAG	1 cut(s)	878
BfoI	RGCGCY	3 cut(s)	248, 285, 942
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	8 cut(s)	128, 147, 375, 420, 528, 878, 881, 942
BlsI	GCNGC	8 cut(s)	129, 148, 376, 421, 529, 879, 882, 943
Bme1390I	CCNGG	2 cut(s)	218, 614
Bme18I	GGWCC	4 cut(s)	413, 474, 649, 969
BmeRI	GACNNNNNGTC	1 cut(s)	411
BmgT120I	GGNCC	6 cut(s)	144, 413, 474, 512, 649, 969
BmiI	GGNNCC	5 cut(s)	246, 283, 537, 583, 970
BmrFI	CCNGG	2 cut(s)	218, 614
BmrI	ACTGGG	2 cut(s)	126, 321
BmsI	GCATC	3 cut(s)	595, 738, 877
BmuI	ACTGGG	2 cut(s)	126, 321
BpiI	GAAGAC	1 cut(s)	445
Bpu14I	TTCGAA	1 cut(s)	673
BpuMI	CCSGG	1 cut(s)	218
BsaHI	GRCGYC	2 cut(s)	245, 282
BsaJI	CCNNGG	2 cut(s)	768, 981
BsaWI	WCCGGW	2 cut(s)	476, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	3 cut(s)	132, 316, 1114
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	768, 981
BseGI	GGATG	3 cut(s)	26, 444, 599
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseNI	ACTGG	3 cut(s)	132, 316, 1114
BseRI	GAGGAG	1 cut(s)	106
BseSI	GKGCMC	2 cut(s)	686, 1041
BseXI	GCAGC	6 cut(s)	114, 406, 514, 864, 892, 928
BsgI	GTGCAG	2 cut(s)	482, 894
BshFI	GGCC	5 cut(s)	146, 302, 514, 600, 612
BshNI	GGYRCC	2 cut(s)	244, 281
BshTI	ACCGGT	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	4 cut(s)	197, 217, 477, 861
BslFI	GGGAC	3 cut(s)	244, 734, 982
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	3 cut(s)	92, 133, 157
BsmBI	CGTCTC	3 cut(s)	92, 133, 157
BsmFI	GGGAC	3 cut(s)	244, 734, 982
BsnI	GGCC	5 cut(s)	146, 302, 514, 600, 612
Bsp119I	TTCGAA	1 cut(s)	673
Bsp1286I	GDGCHC	4 cut(s)	574, 586, 686, 1041
Bsp143I	GATC	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	981
BspACI	CCGC	3 cut(s)	147, 374, 559
BspANI	GGCC	5 cut(s)	146, 302, 514, 600, 612
BspLI	GGNNCC	5 cut(s)	246, 283, 537, 583, 970
BspMAI	CTGCAG	1 cut(s)	882
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	278
BspT104I	TTCGAA	1 cut(s)	673
BspT107I	GGYRCC	2 cut(s)	244, 281
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	3 cut(s)	132, 316, 1114
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	768, 981
BssMI	GATC	1 cut(s)	270
BssNI	GRCGYC	2 cut(s)	245, 282
BssSI	CACGAG	1 cut(s)	927
BssT1I	CCWWGG	2 cut(s)	768, 981
Bst2BI	CACGAG	1 cut(s)	927
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	4 cut(s)	203, 823, 973, 997
Bst6I	CTCTTC	3 cut(s)	25, 67, 124
BstACI	GRCGYC	2 cut(s)	245, 282
BstAPI	GCANNNNNTGC	2 cut(s)	323, 877
BstBI	TTCGAA	1 cut(s)	673
BstC8I	GCNNGC	4 cut(s)	497, 610, 909, 937
BstDEI	CTNAG	5 cut(s)	288, 349, 402, 461, 961
BstDSI	CCRYGG	1 cut(s)	981
BstF5I	GGATG	3 cut(s)	26, 444, 599
BstH2I	RGCGCY	3 cut(s)	248, 285, 942
BstHHI	GCGC	4 cut(s)	247, 284, 328, 941
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	3 cut(s)	92, 133, 157
BstMBI	GATC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	216, 612
BstSFI	CTRYAG	1 cut(s)	878
BstSLI	GKGCMC	2 cut(s)	686, 1041
BstV1I	GCAGC	6 cut(s)	114, 406, 514, 864, 892, 928
BstV2I	GAAGAC	1 cut(s)	445
BstXI	CCANNNNNNTGG	2 cut(s)	608, 1121
BsuRI	GGCC	5 cut(s)	146, 302, 514, 600, 612
BtgI	CCRYGG	1 cut(s)	981
BtsCI	GGATG	3 cut(s)	26, 444, 599
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	4 cut(s)	497, 610, 909, 937
CaiI	CAGNNNCTG	2 cut(s)	422, 515
CfoI	GCGC	4 cut(s)	247, 284, 328, 941
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	6 cut(s)	144, 413, 474, 512, 649, 969
Csp6I	GTAC	3 cut(s)	353, 555, 799
CspAI	ACCGGT	1 cut(s)	476
CspCI	CAANNNNNGTGG	2 cut(s)	847, 882
CviAII	CATG	6 cut(s)	471, 602, 872, 982, 1011, 1062
CviQI	GTAC	3 cut(s)	353, 555, 799
DdeI	CTNAG	5 cut(s)	288, 349, 402, 461, 961
DinI	GGCGCC	2 cut(s)	246, 283
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
DrdI	GACNNNNNNGTC	1 cut(s)	238
DriI	GACNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	238
EaeI	YGGCCR	2 cut(s)	598, 610
Eam1104I	CTCTTC	3 cut(s)	25, 67, 124
Eam1105I	GACNNNNNGTC	1 cut(s)	411
EarI	CTCTTC	3 cut(s)	25, 67, 124
Eco130I	CCWWGG	2 cut(s)	768, 981
Eco24I	GRGCYC	1 cut(s)	586
Eco47I	GGWCC	4 cut(s)	413, 474, 649, 969
Eco57I	CTGAAG	2 cut(s)	665, 726
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	612
EcoT14I	CCWWGG	2 cut(s)	768, 981
EcoT22I	ATGCAT	1 cut(s)	892
EcoT38I	GRGCYC	1 cut(s)	586
EgeI	GGCGCC	2 cut(s)	246, 283
EheI	GGCGCC	2 cut(s)	246, 283
ErhI	CCWWGG	2 cut(s)	768, 981
Esp3I	CGTCTC	3 cut(s)	92, 133, 157
FaeI	CATG	6 cut(s)	474, 605, 875, 985, 1014, 1065
FaqI	GGGAC	3 cut(s)	244, 734, 982
FatI	CATG	6 cut(s)	470, 601, 871, 981, 1010, 1061
FauI	CCCGC	1 cut(s)	566
Fnu4HI	GCNGC	8 cut(s)	128, 147, 375, 420, 528, 878, 881, 942
FokI	GGATG	3 cut(s)	13, 431, 606
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	8 cut(s)	128, 147, 375, 420, 528, 878, 881, 942
FspBI	CTAG	4 cut(s)	524, 710, 950, 1004
GlaI	GCGC	4 cut(s)	246, 283, 327, 940
GluI	GCNGC	8 cut(s)	128, 147, 375, 420, 528, 878, 881, 942
HaeII	RGCGCY	3 cut(s)	248, 285, 942
HaeIII	GGCC	5 cut(s)	146, 302, 514, 600, 612
HapII	CCGG	4 cut(s)	197, 217, 477, 861
HhaI	GCGC	4 cut(s)	247, 284, 328, 941
Hin1I	GRCGYC	2 cut(s)	245, 282
Hin1II	CATG	6 cut(s)	474, 605, 875, 985, 1014, 1065
Hin6I	GCGC	4 cut(s)	245, 282, 326, 939
HinP1I	GCGC	4 cut(s)	245, 282, 326, 939
HindIII	AAGCTT	1 cut(s)	738
HinfI	GANTC	2 cut(s)	250, 441
HpaII	CCGG	4 cut(s)	197, 217, 477, 861
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188I	TCNGA	2 cut(s)	270, 745
Hpy188III	TCNNGA	3 cut(s)	89, 448, 809
Hpy8I	GTNNAC	1 cut(s)	799
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	640
HpyCH4III	ACNGT	4 cut(s)	203, 823, 973, 997
HpyF3I	CTNAG	5 cut(s)	288, 349, 402, 461, 961
Hsp92I	GRCGYC	2 cut(s)	245, 282
Hsp92II	CATG	6 cut(s)	474, 605, 875, 985, 1014, 1065
HspAI	GCGC	4 cut(s)	245, 282, 326, 939
KasI	GGCGCC	2 cut(s)	244, 281
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	3 cut(s)	541, 581, 660
Lsp1109I	GCAGC	6 cut(s)	114, 406, 514, 864, 892, 928
LweI	GCATC	3 cut(s)	595, 738, 877
MaeI	CTAG	4 cut(s)	524, 710, 950, 1004
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MfeI	CAATTG	2 cut(s)	546, 1083
MhlI	GDGCHC	4 cut(s)	574, 586, 686, 1041
MlsI	TGGCCA	2 cut(s)	600, 612
MluCI	AATT	5 cut(s)	106, 455, 546, 864, 1083
MluNI	TGGCCA	2 cut(s)	600, 612
Mly113I	GGCGCC	2 cut(s)	245, 282
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	6 cut(s)	28, 70, 124, 127, 295, 596
Mox20I	TGGCCA	2 cut(s)	600, 612
Mph1103I	ATGCAT	1 cut(s)	892
MroXI	GAANNNNTTC	2 cut(s)	9, 669
MscI	TGGCCA	2 cut(s)	600, 612
MseI	TTAA	2 cut(s)	51, 1025
Msp20I	TGGCCA	2 cut(s)	600, 612
MspA1I	CMGCKG	2 cut(s)	374, 419
MspI	CCGG	4 cut(s)	197, 217, 477, 861
MspR9I	CCNGG	2 cut(s)	218, 614
MunI	CAATTG	2 cut(s)	546, 1083
MvaI	CCWGG	1 cut(s)	614
NarI	GGCGCC	2 cut(s)	245, 282
NciI	CCSGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	981
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	6 cut(s)	474, 605, 875, 985, 1014, 1065
NlaIV	GGNNCC	5 cut(s)	246, 283, 537, 583, 970
NsiI	ATGCAT	1 cut(s)	892
NspV	TTCGAA	1 cut(s)	673
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	9, 669
PfeI	GAWTC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	824
PinAI	ACCGGT	1 cut(s)	476
PkrI	GCNGC	8 cut(s)	129, 148, 376, 421, 529, 879, 882, 943
PleI	GAGTC	1 cut(s)	435
PluTI	GGCGCC	2 cut(s)	248, 285
PpsI	GAGTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	5 cut(s)	246, 283, 537, 583, 970
PspPI	GGNCC	6 cut(s)	144, 413, 474, 512, 649, 969
PstI	CTGCAG	1 cut(s)	882
PstNI	CAGNNNCTG	2 cut(s)	422, 515
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	354, 556, 800
RsaNI	GTAC	3 cut(s)	353, 555, 799
SaqAI	TTAA	2 cut(s)	51, 1025
SatI	GCNGC	8 cut(s)	128, 147, 375, 420, 528, 878, 881, 942
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	6 cut(s)	144, 413, 474, 512, 649, 969
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	2 cut(s)	218, 614
SduI	GDGCHC	4 cut(s)	574, 586, 686, 1041
SfaNI	GCATC	3 cut(s)	595, 738, 877
SfcI	CTRYAG	1 cut(s)	878
SfoI	GGCGCC	2 cut(s)	246, 283
SfuI	TTCGAA	1 cut(s)	673
SinI	GGWCC	4 cut(s)	413, 474, 649, 969
SpeI	ACTAGT	1 cut(s)	709
Sse9I	AATT	5 cut(s)	106, 455, 546, 864, 1083
SsiI	CCGC	3 cut(s)	147, 374, 559
SspDI	GGCGCC	2 cut(s)	244, 281
SspMI	CTAG	4 cut(s)	524, 710, 950, 1004
StyD4I	CCNGG	2 cut(s)	216, 612
StyI	CCWWGG	2 cut(s)	768, 981
TaaI	ACNGT	4 cut(s)	203, 823, 973, 997
TaqI	TCGA	3 cut(s)	90, 212, 673
TasI	AATT	5 cut(s)	106, 455, 546, 864, 1083
TatI	WGTACW	1 cut(s)	352
TauI	GCSGC	2 cut(s)	149, 377
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	51, 1025
Tru9I	TTAA	2 cut(s)	51, 1025
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	6 cut(s)	127, 419, 527, 877, 880, 941
TspDTI	ATGAA	1 cut(s)	15
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	824
VpaK11BI	GGWCC	4 cut(s)	413, 474, 649, 969
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XmnI	GAANNNNTTC	2 cut(s)	9, 669
XspI	CTAG	4 cut(s)	524, 710, 950, 1004
Zsp2I	ATGCAT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.